Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004646.1

Orthogroup ID

OG0003170

Physical Location & Seq

Genomic Coordinates Forward (+)

35250 .. 42589

Gene Structure 7340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

atgaaccggagaacgtcggaaagaaggaaaagcggctgtttgaagccgtcgtcgtcttcttcttcttccagttcttcatccttctcctttctctcctcacggcatcaacaatcatcactcatcttttccaaaggtatggcaggggaaaaattggatgaaaatattccttgcgaggaaaatgggactgtagaatcttcgaatggcaatggtaatggagaagccgctgaacaatctccaactgttgagaaagatgaggatgacgacaaagatgtttcaaaaaagaagaagaagaaaaataagagcaagaaaaagaaagcacaggcagagcatactgatccacaatctttaagtgggcaaactgatccacaatctacaactaggcaaactgctgcacaatctacaagtaggcaaactgatccaccatccattcctcttattgatctgttcccacatggggagtttcctgagggcgaaattcaacaatacagagatgacaacttgtggaggactacttctgaagagaagagggagttggagcgccttgaaaaaccattatataattcagttcgtcgagctgcagaagttcatcgccaggtatggaaatacatcagagggattttaaagcctggaatgttgatgactaatttgtcaggcattgcattccccacaggatgctctttgaattgggttgctgctcattggaccccaaatacaggggacaagacggtgcttcagtatgatgatgtgatgaaattagactttggaactcatgttgatggtcatatagttgactgtgcatttacagtagcattcaatcctatgtttgatccactacttgaagcctcacgtgaagcaacaaatacggttaaaagtatccggaacttgaatggacatggcattggaccttaccaaatccatgctggaaaatcagttcccattgtgagaggaggggagcagacaaaaatggaagagggtgaattttttgcgattgaaactttcgcatcaactgggaaaggatatgtcagagaagatctagagtgcagccattacatgaaaaattttgatgccggccacatcccactgaggctgcctagggcaaagcaattgctagcaacaattaacaagaacttctccacattggcgttctgcaggcgatatttagaccgcctgggggagaccaagtatcttatggcgcttaagaatttgtgcgatgctggcattgtccagccctatcctcctctctgtgatgttaaagggagctatgtatctcagtttgagcatacaattttactccggccaacctgcaaagaggtcatatcaagaggcgatgattactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

445

Amino Acids

49.77

Weight (kDa)

7.98

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	210 - 288	2.9e-07	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44180 AT2G44180 AT3G59990 AT3G59990 AT3G59990 AT3G59990
fragaria_vesca	FvH4_5g31110 FvH4_5g31110 FvH4_5g31120
malus_domestica	MD17G1285400.v1.1
prunus_persica	Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1
pyrus_communis	pycom17g28120
rosa_chinensis	RchiOBHm_Chr1g0328111 RchiOBHm_Chr1g0328121 RchiOBHm_Chr1g0328131
rosa_laevigata	RLG00000029939
rosa_multiflora	Rmu_sc0000408.1_g000001 Rmu_sc0002809.1_g000034 Rmu_sc0004646.1_g000013 Rmu_sc0009961.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060180 Rroxscaffold_4G00321810
rosa_rugosa	Rorug01G0073700 Rorug01G0073800.1 Rorug01G0073900
rosa_samantha	Rh1AG090800 Rh1BG072600 Rh1BG073300 Rh1BG073500 Rh1CG087200 Rh1DG094100 Rh1DG094600
rosa_wichuraiana	Rw1G007030 Rw1G007040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	646
Acc36I	ACCTGC	1 cut(s)	1310
AccIII	TCCGGA	1 cut(s)	876
AciI	CCGC	3 cut(s)	33, 222, 1165
AclWI	GGATC	4 cut(s)	329, 356, 410, 821
AcoI	YGGCCR	2 cut(s)	1069, 1295
AcsI	RAATTY	4 cut(s)	474, 977, 1057, 1201
AcuI	CTGAAG	2 cut(s)	537, 716
AcvI	CACGTG	1 cut(s)	848
AfiI	CCNNNNNNNGG	3 cut(s)	454, 713, 1171
AflII	CTTAAG	1 cut(s)	1196
AgsI	TTSAA	9 cut(s)	43, 276, 479, 545, 682, 814, 839, 886, 992
AjnI	CCWGG	3 cut(s)	591, 625, 1167
AjuI	GAANNNNNNNTTGG	2 cut(s)	515, 547
AloI	GAACNNNNNNTCC	2 cut(s)	915, 947
AluBI	AGCT	2 cut(s)	575, 1260
AluI	AGCT	2 cut(s)	575, 1260
Alw26I	GTCTC	1 cut(s)	1169
AlwI	GGATC	4 cut(s)	329, 356, 410, 821
Aor13HI	TCCGGA	1 cut(s)	876
AoxI	GGCC	2 cut(s)	1069, 1295
ApeKI	GCWGC	5 cut(s)	389, 575, 692, 1041, 1087
ApoI	RAATTY	4 cut(s)	474, 977, 1057, 1201
Asp700I	GAANNNNTTC	1 cut(s)	162
AspA2I	CCTAGG	1 cut(s)	1091
AspLEI	GCGC	2 cut(s)	540, 1195
AspS9I	GGNCC	2 cut(s)	702, 902
AsuHPI	GGTGA	1 cut(s)	986
AsuII	TTCGAA	1 cut(s)	197
AsuNHI	GCTAGC	1 cut(s)	1108
AvaII	GGWCC	2 cut(s)	702, 902
AvrII	CCTAGG	1 cut(s)	1091
AxyI	CCTNAGG	1 cut(s)	465
BbrPI	CACGTG	1 cut(s)	848
BbsI	GAAGAC	1 cut(s)	48
BbvI	GCAGC	5 cut(s)	376, 562, 679, 1053, 1074
BccI	CCATC	2 cut(s)	430, 770
BceAI	ACGGC	2 cut(s)	31, 116
BciT130I	CCWGG	3 cut(s)	593, 627, 1169
BciVI	GTATCC	1 cut(s)	884
BcoDI	GTCTC	1 cut(s)	1169
BfaI	CTAG	4 cut(s)	378, 1034, 1092, 1109
BfmI	CTRYAG	3 cut(s)	186, 576, 1147
BfoI	RGCGCY	2 cut(s)	541, 1196
BfrI	CTTAAG	1 cut(s)	1196
BfuAI	ACCTGC	1 cut(s)	1310
BfuI	GTATCC	1 cut(s)	884
BglII	AGATCT	1 cut(s)	1030
BisI	GCNGC	7 cut(s)	34, 222, 390, 576, 693, 1042, 1088
BlnI	CCTAGG	1 cut(s)	1091
BlsI	GCNGC	7 cut(s)	35, 223, 391, 577, 694, 1043, 1089
Bme1390I	CCNGG	3 cut(s)	593, 627, 1169
Bme18I	GGWCC	2 cut(s)	702, 902
BmgT120I	GGNCC	2 cut(s)	702, 902
BmiI	GGNNCC	1 cut(s)	704
BmrFI	CCNGG	3 cut(s)	593, 627, 1169
BmrI	ACTGGG	1 cut(s)	1017
BmsI	GCATC	5 cut(s)	112, 662, 1010, 1054, 1201
BmtI	GCTAGC	1 cut(s)	1112
BmuI	ACTGGG	1 cut(s)	1017
BpiI	GAAGAC	1 cut(s)	48
Bpu14I	TTCGAA	1 cut(s)	197
BsaAI	YACGTR	1 cut(s)	848
BsaI	GGTCTC	1 cut(s)	1169
BsaJI	CCNNGG	2 cut(s)	1091, 1168
BsaWI	WCCGGW	2 cut(s)	6, 876
BsaXI	ACNNNNNCTCC	2 cut(s)	1166, 1196
Bsc4I	CCNNNNNNNGG	3 cut(s)	454, 713, 1171
Bse118I	RCCGGY	1 cut(s)	1067
Bse1I	ACTGG	2 cut(s)	69, 1012
Bse21I	CCTNAGG	1 cut(s)	465
Bse3DI	GCAATG	2 cut(s)	211, 654
BseAI	TCCGGA	1 cut(s)	876
BseBI	CCWGG	3 cut(s)	593, 627, 1169
BseDI	CCNNGG	2 cut(s)	1091, 1168
BseGI	GGATG	6 cut(s)	77, 160, 262, 422, 677, 1074
BseLI	CCNNNNNNNGG	3 cut(s)	454, 713, 1171
BseMI	GCAATG	2 cut(s)	211, 654
BseMII	CTCAG	3 cut(s)	456, 1073, 1283
BseNI	ACTGG	2 cut(s)	69, 1012
BseRI	GAGGAG	3 cut(s)	85, 960, 1227
BseXI	GCAGC	5 cut(s)	376, 562, 679, 1053, 1074
BsgI	GTGCAG	2 cut(s)	375, 1060
BshFI	GGCC	2 cut(s)	1071, 1297
BsiSI	CCGG	4 cut(s)	7, 877, 1068, 1294
BslFI	GGGAC	2 cut(s)	196, 731
BslI	CCNNNNNNNGG	3 cut(s)	454, 713, 1171
BsmAI	GTCTC	1 cut(s)	1169
BsmFI	GGGAC	2 cut(s)	196, 731
BsmI	GAATGC	2 cut(s)	659, 809
BsnI	GGCC	2 cut(s)	1071, 1297
Bso31I	GGTCTC	1 cut(s)	1169
Bsp119I	TTCGAA	1 cut(s)	197
Bsp13I	TCCGGA	1 cut(s)	876
Bsp143I	GATC	6 cut(s)	334, 361, 415, 439, 826, 1030
BspACI	CCGC	3 cut(s)	33, 222, 1165
BspANI	GGCC	2 cut(s)	1071, 1297
BspCNI	CTCAG	3 cut(s)	457, 1074, 1282
BspEI	TCCGGA	1 cut(s)	876
BspLI	GGNNCC	1 cut(s)	704
BspMAI	CTGCAG	2 cut(s)	580, 1151
BspMI	ACCTGC	1 cut(s)	1310
BspOI	GCTAGC	1 cut(s)	1112
BspPI	GGATC	4 cut(s)	329, 356, 410, 821
BspT104I	TTCGAA	1 cut(s)	197
BspTI	CTTAAG	1 cut(s)	1196
BspTNI	GGTCTC	1 cut(s)	1169
BsrDI	GCAATG	2 cut(s)	211, 654
BsrFI	RCCGGY	1 cut(s)	1067
BsrI	ACTGG	2 cut(s)	69, 1012
BssAI	RCCGGY	1 cut(s)	1067
BssECI	CCNNGG	2 cut(s)	1091, 1168
BssMI	GATC	6 cut(s)	334, 361, 415, 439, 826, 1030
BssT1I	CCWWGG	1 cut(s)	1091
Bst2UI	CCWGG	3 cut(s)	593, 627, 1169
Bst4CI	ACNGT	6 cut(s)	187, 241, 727, 794, 805, 865
Bst6I	CTCTTC	3 cut(s)	513, 518, 963
BstAFI	CTTAAG	1 cut(s)	1196
BstBAI	YACGTR	1 cut(s)	848
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	4 cut(s)	1069, 1110, 1151, 1216
BstDEI	CTNAG	3 cut(s)	465, 1082, 1269
BstF5I	GGATG	6 cut(s)	77, 160, 262, 422, 677, 1074
BstH2I	RGCGCY	2 cut(s)	541, 1196
BstHHI	GCGC	2 cut(s)	540, 1195
BstKTI	GATC	6 cut(s)	337, 364, 418, 442, 829, 1033
BstMAI	GTCTC	1 cut(s)	1169
BstMBI	GATC	6 cut(s)	334, 361, 415, 439, 826, 1030
BstMWI	GCNNNNNNNGC	1 cut(s)	1215
BstNI	CCWGG	3 cut(s)	593, 627, 1169
BstSCI	CCNGG	3 cut(s)	591, 625, 1167
BstSFI	CTRYAG	3 cut(s)	186, 576, 1147
BstV1I	GCAGC	5 cut(s)	376, 562, 679, 1053, 1074
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	1030
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	1030
Bsu36I	CCTNAGG	1 cut(s)	465
BsuI	GTATCC	1 cut(s)	884
BsuRI	GGCC	2 cut(s)	1071, 1297
BtgZI	GCGATG	2 cut(s)	572, 1224
BtsCI	GGATG	6 cut(s)	77, 160, 262, 422, 677, 1074
BtsIMutI	CAGTG	1 cut(s)	1079
BveI	ACCTGC	1 cut(s)	1310
Cac8I	GCNNGC	4 cut(s)	1069, 1110, 1151, 1216
CfoI	GCGC	2 cut(s)	540, 1195
Cfr10I	RCCGGY	1 cut(s)	1067
Cfr13I	GGNCC	2 cut(s)	702, 902
CviAII	CATG	5 cut(s)	452, 770, 893, 917, 1051
DdeI	CTNAG	3 cut(s)	465, 1082, 1269
DpnI	GATC	6 cut(s)	336, 363, 417, 441, 828, 1032
DpnII	GATC	6 cut(s)	334, 361, 415, 439, 826, 1030
DraI	TTTAAA	1 cut(s)	621
DrdI	GACNNNNNNGTC	1 cut(s)	646
DseDI	GACNNNNNNGTC	1 cut(s)	646
EaeI	YGGCCR	2 cut(s)	1069, 1295
Eam1104I	CTCTTC	3 cut(s)	513, 518, 963
EarI	CTCTTC	3 cut(s)	513, 518, 963
Eco130I	CCWWGG	1 cut(s)	1091
Eco31I	GGTCTC	1 cut(s)	1169
Eco47I	GGWCC	2 cut(s)	702, 902
Eco57I	CTGAAG	2 cut(s)	537, 716
Eco72I	CACGTG	1 cut(s)	848
Eco81I	CCTNAGG	1 cut(s)	465
EcoRII	CCWGG	3 cut(s)	591, 625, 1167
EcoT14I	CCWWGG	1 cut(s)	1091
ErhI	CCWWGG	1 cut(s)	1091
FaeI	CATG	5 cut(s)	455, 773, 896, 920, 1054
FaqI	GGGAC	2 cut(s)	196, 731
FatI	CATG	5 cut(s)	451, 769, 892, 916, 1050
Fnu4HI	GCNGC	7 cut(s)	34, 222, 390, 576, 693, 1042, 1088
FokI	GGATG	6 cut(s)	64, 167, 269, 409, 684, 1061
Fsp4HI	GCNGC	7 cut(s)	34, 222, 390, 576, 693, 1042, 1088
FspBI	CTAG	4 cut(s)	378, 1034, 1092, 1109
GlaI	GCGC	2 cut(s)	539, 1194
GluI	GCNGC	7 cut(s)	34, 222, 390, 576, 693, 1042, 1088
HaeII	RGCGCY	2 cut(s)	541, 1196
HaeIII	GGCC	2 cut(s)	1071, 1297
HapII	CCGG	4 cut(s)	7, 877, 1068, 1294
HhaI	GCGC	2 cut(s)	540, 1195
Hin1II	CATG	5 cut(s)	455, 773, 896, 920, 1054
Hin6I	GCGC	2 cut(s)	538, 1193
HinP1I	GCGC	2 cut(s)	538, 1193
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	4 cut(s)	7, 877, 1068, 1294
HphI	GGTGA	1 cut(s)	986
Hpy166II	GTNNAC	1 cut(s)	790
Hpy188I	TCNGA	4 cut(s)	19, 517, 611, 1025
Hpy188III	TCNNGA	4 cut(s)	464, 877, 1034, 1320
Hpy8I	GTNNAC	1 cut(s)	790
Hpy99I	CGWCG	4 cut(s)	19, 52, 55, 573
HpyAV	CCTTC	2 cut(s)	18, 91
HpyCH4III	ACNGT	6 cut(s)	187, 241, 727, 794, 805, 865
HpyCH4IV	ACGT	2 cut(s)	14, 847
HpyCH4V	TGCA	7 cut(s)	392, 578, 659, 797, 1041, 1149, 1305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1215
HpyF3I	CTNAG	3 cut(s)	465, 1082, 1269
HpySE526I	ACGT	2 cut(s)	14, 847
Hsp92II	CATG	5 cut(s)	455, 773, 896, 920, 1054
HspAI	GCGC	2 cut(s)	538, 1193
Kpn2I	TCCGGA	1 cut(s)	876
KroI	GCCGGC	1 cut(s)	1067
KroNI	GCCGGC	1 cut(s)	1069
Kzo9I	GATC	6 cut(s)	334, 361, 415, 439, 826, 1030
LmnI	GCTCC	3 cut(s)	535, 952, 1257
Lsp1109I	GCAGC	5 cut(s)	376, 562, 679, 1053, 1074
LweI	GCATC	5 cut(s)	112, 662, 1010, 1054, 1201
MaeI	CTAG	4 cut(s)	378, 1034, 1092, 1109
MaeII	ACGT	2 cut(s)	14, 847
MalI	GATC	6 cut(s)	336, 363, 417, 441, 828, 1032
MboI	GATC	6 cut(s)	334, 361, 415, 439, 826, 1030
MfeI	CAATTG	1 cut(s)	1103
MflI	RGATCY	1 cut(s)	1030
MmeI	TCCRAC	2 cut(s)	260, 513
MroI	TCCGGA	1 cut(s)	876
MroNI	GCCGGC	1 cut(s)	1067
MroXI	GAANNNNTTC	1 cut(s)	162
MseI	TTAA	6 cut(s)	347, 620, 867, 1119, 1197, 1251
MslI	CAYNNNNRTG	1 cut(s)	774
MspA1I	CMGCKG	1 cut(s)	224
MspCI	CTTAAG	1 cut(s)	1196
MspI	CCGG	4 cut(s)	7, 877, 1068, 1294
MspR9I	CCNGG	3 cut(s)	593, 627, 1169
MunI	CAATTG	1 cut(s)	1103
Mva1269I	GAATGC	2 cut(s)	659, 809
MvaI	CCWGG	3 cut(s)	593, 627, 1169
MwoI	GCNNNNNNNGC	1 cut(s)	1215
NaeI	GCCGGC	1 cut(s)	1069
NdeII	GATC	6 cut(s)	334, 361, 415, 439, 826, 1030
NgoMIV	GCCGGC	1 cut(s)	1067
NheI	GCTAGC	1 cut(s)	1108
NlaIII	CATG	5 cut(s)	455, 773, 896, 920, 1054
NlaIV	GGNNCC	1 cut(s)	704
NspV	TTCGAA	1 cut(s)	197
PctI	GAATGC	2 cut(s)	659, 809
PdiI	GCCGGC	1 cut(s)	1069
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	7 cut(s)	35, 223, 391, 577, 694, 1043, 1089
PmaCI	CACGTG	1 cut(s)	848
PmlI	CACGTG	1 cut(s)	848
Ppu21I	YACGTR	1 cut(s)	848
Psp6I	CCWGG	3 cut(s)	591, 625, 1167
PspCI	CACGTG	1 cut(s)	848
PspGI	CCWGG	3 cut(s)	591, 625, 1167
PspN4I	GGNNCC	1 cut(s)	704
PspPI	GGNCC	2 cut(s)	702, 902
PstI	CTGCAG	2 cut(s)	580, 1151
PsuI	RGATCY	1 cut(s)	1030
RseI	CAYNNNNRTG	1 cut(s)	774
SaqAI	TTAA	6 cut(s)	347, 620, 867, 1119, 1197, 1251
SatI	GCNGC	7 cut(s)	34, 222, 390, 576, 693, 1042, 1088
Sau3AI	GATC	6 cut(s)	334, 361, 415, 439, 826, 1030
Sau96I	GGNCC	2 cut(s)	702, 902
ScrFI	CCNGG	3 cut(s)	593, 627, 1169
SetI	ASST	9 cut(s)	17, 136, 577, 597, 850, 907, 1262, 1304, 1314
SfaNI	GCATC	5 cut(s)	112, 662, 1010, 1054, 1201
SfcI	CTRYAG	3 cut(s)	186, 576, 1147
SfuI	TTCGAA	1 cut(s)	197
SinI	GGWCC	2 cut(s)	702, 902
SmiMI	CAYNNNNRTG	1 cut(s)	774
SmlI	CTYRAG	1 cut(s)	1196
SmoI	CTYRAG	1 cut(s)	1196
SsiI	CCGC	3 cut(s)	33, 222, 1165
SspI	AATATT	1 cut(s)	163
SspMI	CTAG	4 cut(s)	378, 1034, 1092, 1109
StyD4I	CCNGG	3 cut(s)	591, 625, 1167
StyI	CCWWGG	1 cut(s)	1091
TaaI	ACNGT	6 cut(s)	187, 241, 727, 794, 805, 865
TaiI	ACGT	2 cut(s)	17, 850
TaqI	TCGA	2 cut(s)	197, 571
TauI	GCSGC	2 cut(s)	36, 224
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	6 cut(s)	347, 620, 867, 1119, 1197, 1251
Tru9I	TTAA	6 cut(s)	347, 620, 867, 1119, 1197, 1251
TscAI	CASTG	1 cut(s)	1086
TseI	GCWGC	5 cut(s)	389, 575, 692, 1041, 1087
TspDTI	ATGAA	6 cut(s)	17, 66, 171, 575, 764, 1067
TspRI	CASTG	1 cut(s)	1086
Vha464I	CTTAAG	1 cut(s)	1196
VpaK11BI	GGWCC	2 cut(s)	702, 902
XapI	RAATTY	4 cut(s)	474, 977, 1057, 1201
XbaI	TCTAGA	1 cut(s)	1033
XcmI	CCANNNNNNNNNTGG	2 cut(s)	917, 1186
XmaJI	CCTAGG	1 cut(s)	1091
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	4 cut(s)	378, 1034, 1092, 1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.