Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004811.1

Orthogroup ID

OG0002010

Physical Location & Seq

Genomic Coordinates Forward (+)

33714 .. 34642

Gene Structure 929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atgatacaggttggacttagtggcattttgatggtgaaaggcacaccctatgagaacatgaaccaggcctttgaccaagacaatctccacggcactctgttatctgaaaacgttgttggagttattcatgaccattacataacatttcatcttgatatggatgtagacggttctgaaaattcctttgttaaagtgaatctccaaaggcagcaaacctctcctgatgagtccccaaggaaaagcttcttgaaagcaactagaactgtggccaaaacggagaaggatgcacaagtcaagctaagactctatgacccgtcggagttccatgtgatcaacccgtcgaaacagacccgggttgggaaccctgtcgggtataaggtggttcctggtgccactgctgctagtttgcttgatcctgaagaccctccccaaaagagggctgcttttacgaataaccaaatctgggtcactcaatacaatcggagtgagcagtgggcaggtgggttgtttgcttaccaaagccatggagaagatactttggccatgtggtctgacaaggatcgagaaattgagaataaagacattgtggtttggtacacattagggtttcatcacatgccatgccaagaagactttcctataatgccgacggtgtcatctagctttgatttgaagcctgtgaatttctttcagagcaaccccatactccggacgccgcctaatgttgagagtgatttgccagtttgctcacctgttgcttcaacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001505 GO:0006807 GO:0006809 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0017144 GO:0023052 GO:0032870 GO:0033993 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0044237 GO:0044249 GO:0044271 GO:0046209 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0072593 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

255

Amino Acids

28.67

Weight (kDa)

5.32

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	2 - 235	8.8e-73	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12270 AT4G12280 AT4G12290 AT4G12290
fragaria_vesca	FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610
malus_domestica	MD02G1257400.v1.1 MD06G1075500.v1.1 MD16G1192400.v1.1
prunus_persica	Prupe.5G078700_v2.0.a1 Prupe.5G078900_v2.0.a1
pyrus_communis	pycom09g07970 pycom13g04890 pycom15g15380 pycom15g15390
rosa_chinensis	RchiOBHm_Chr5g0060271 RchiOBHm_Chr7g0201651 RchiOBHm_Chr7g0201661
rosa_laevigata	RLG00000003658
rosa_multiflora	Rmu_sc0001512.1_g000015 Rmu_sc0004811.1_g000006 Rmu_sc0004811.1_g000008 Rmu_sc0004811.1_g000009 Rmu_sc0004811.1_g000010 Rmu_sc0004811.1_g000011
rosa_roxburghii	Rroxscaffold_3G00255130 Rroxscaffold_3G00255140 Rroxscaffold_3G00255150 Rroxscaffold_6G00396720
rosa_rugosa	Rorug07G0065300 Rorug07G0065300
rosa_samantha	Rh7AG192300 Rh7AG192500 Rh7BG194400 Rh7BG194500 Rh7BG194600 Rh7CG203500 Rh7CG203600 Rh7CG203700 Rh7DG197700
rosa_wichuraiana	Rw7G016860 Rw7G016870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	488
Acc36I	ACCTGC	1 cut(s)	488
AccB1I	GGYRCC	1 cut(s)	389
AccI	GTMKAC	1 cut(s)	165
AccIII	TCCGGA	1 cut(s)	708
AciI	CCGC	1 cut(s)	716
AclI	AACGTT	1 cut(s)	111
AclWI	GGATC	2 cut(s)	407, 567
AcoI	YGGCCR	2 cut(s)	267, 540
AcsI	RAATTY	2 cut(s)	178, 682
AcuI	CTGAAG	1 cut(s)	438
AcyI	GRCGYC	1 cut(s)	713
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	5 cut(s)	357, 435, 436, 463, 708
AgsI	TTSAA	3 cut(s)	250, 673, 762
AjnI	CCWGG	2 cut(s)	63, 385
AjuI	GAANNNNNNNTTGG	4 cut(s)	99, 131, 618, 650
AluBI	AGCT	3 cut(s)	243, 298, 663
AluI	AGCT	3 cut(s)	243, 298, 663
AlwI	GGATC	2 cut(s)	407, 567
Ama87I	CYCGRG	1 cut(s)	351
Aor13HI	TCCGGA	1 cut(s)	708
AoxI	GGCC	3 cut(s)	66, 267, 540
ApeKI	GCWGC	3 cut(s)	208, 398, 440
ApoI	RAATTY	2 cut(s)	178, 682
Asp700I	GAANNNNTTC	2 cut(s)	242, 633
AsuC2I	CCSGG	2 cut(s)	352, 353
AsuHPI	GGTGA	2 cut(s)	46, 741
AvaI	CYCGRG	1 cut(s)	351
BalI	TGGCCA	2 cut(s)	269, 542
BanI	GGYRCC	1 cut(s)	389
BbsI	GAAGAC	2 cut(s)	426, 636
BbvI	GCAGC	3 cut(s)	220, 385, 427
BccI	CCATC	1 cut(s)	25
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	2 cut(s)	65, 387
BclI	TGATCA	1 cut(s)	330
BcnI	CCSGG	2 cut(s)	352, 353
BfaI	CTAG	3 cut(s)	258, 402, 660
BfuAI	ACCTGC	1 cut(s)	488
BisI	GCNGC	4 cut(s)	209, 399, 441, 716
BlsI	GCNGC	4 cut(s)	210, 400, 442, 717
Bme1390I	CCNGG	4 cut(s)	65, 352, 353, 387
BmeT110I	CYCGRG	1 cut(s)	351
BmiI	GGNNCC	3 cut(s)	362, 384, 391
BmrFI	CCNGG	4 cut(s)	65, 352, 353, 387
BmsI	GCATC	1 cut(s)	274
BpiI	GAAGAC	2 cut(s)	426, 636
BpuMI	CCSGG	2 cut(s)	352, 353
BsaHI	GRCGYC	1 cut(s)	713
BsaJI	CCNNGG	4 cut(s)	88, 233, 351, 523
BsaWI	WCCGGW	1 cut(s)	708
Bsc4I	CCNNNNNNNGG	5 cut(s)	357, 435, 436, 463, 708
Bse1I	ACTGG	1 cut(s)	740
BseAI	TCCGGA	1 cut(s)	708
BseBI	CCWGG	2 cut(s)	65, 387
BseDI	CCNNGG	4 cut(s)	88, 233, 351, 523
BseGI	GGATG	2 cut(s)	166, 289
BseLI	CCNNNNNNNGG	5 cut(s)	357, 435, 436, 463, 708
BseNI	ACTGG	1 cut(s)	740
BseXI	GCAGC	3 cut(s)	220, 385, 427
BshFI	GGCC	3 cut(s)	68, 269, 542
BshNI	GGYRCC	1 cut(s)	389
BsiHKCI	CYCGRG	1 cut(s)	351
BsiSI	CCGG	2 cut(s)	352, 709
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	5 cut(s)	357, 435, 436, 463, 708
BsmFI	GGGAC	1 cut(s)	214
BsnI	GGCC	3 cut(s)	68, 269, 542
BsoBI	CYCGRG	1 cut(s)	351
Bsp13I	TCCGGA	1 cut(s)	708
Bsp143I	GATC	3 cut(s)	330, 412, 559
Bsp19I	CCATGG	1 cut(s)	523
BspACI	CCGC	1 cut(s)	716
BspANI	GGCC	3 cut(s)	68, 269, 542
BspEI	TCCGGA	1 cut(s)	708
BspHI	TCATGA	1 cut(s)	127
BspLI	GGNNCC	3 cut(s)	362, 384, 391
BspMI	ACCTGC	1 cut(s)	488
BspPI	GGATC	2 cut(s)	407, 567
BspT107I	GGYRCC	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	740
BssECI	CCNNGG	4 cut(s)	88, 233, 351, 523
BssMI	GATC	3 cut(s)	330, 412, 559
BssNI	GRCGYC	1 cut(s)	713
BssT1I	CCWWGG	2 cut(s)	233, 523
Bst2UI	CCWGG	2 cut(s)	65, 387
Bst4CI	ACNGT	3 cut(s)	170, 265, 652
BstACI	GRCGYC	1 cut(s)	713
BstDEI	CTNAG	2 cut(s)	17, 299
BstDSI	CCRYGG	2 cut(s)	88, 523
BstF5I	GGATG	2 cut(s)	166, 289
BstKTI	GATC	3 cut(s)	333, 415, 562
BstMBI	GATC	3 cut(s)	330, 412, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	2 cut(s)	65, 387
BstNSI	RCATGY	1 cut(s)	619
BstSCI	CCNGG	4 cut(s)	63, 350, 351, 385
BstV1I	GCAGC	3 cut(s)	220, 385, 427
BstV2I	GAAGAC	2 cut(s)	426, 636
BstXI	CCANNNNNNTGG	1 cut(s)	524
BsuRI	GGCC	3 cut(s)	68, 269, 542
BtgI	CCRYGG	2 cut(s)	88, 523
BtsCI	GGATG	2 cut(s)	166, 289
BtsI	GCAGTG	2 cut(s)	393, 497
BtsIMutI	CAGTG	2 cut(s)	393, 497
BveI	ACCTGC	1 cut(s)	488
CciI	TCATGA	1 cut(s)	127
Cfr9I	CCCGGG	1 cut(s)	351
CseI	GACGC	1 cut(s)	721
Csp6I	GTAC	1 cut(s)	595
CviAII	CATG	7 cut(s)	58, 128, 326, 524, 544, 616, 621
CviJI	RGCY	9 cut(s)	68, 243, 269, 298, 440, 522, 542, 663, 676
CviKI_1	RGCY	9 cut(s)	68, 243, 269, 298, 440, 522, 542, 663, 676
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	2 cut(s)	17, 299
DpnI	GATC	3 cut(s)	332, 414, 561
DpnII	GATC	3 cut(s)	330, 412, 559
EaeI	YGGCCR	2 cut(s)	267, 540
Eco130I	CCWWGG	2 cut(s)	233, 523
Eco147I	AGGCCT	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	438
Eco88I	CYCGRG	1 cut(s)	351
EcoRII	CCWGG	2 cut(s)	63, 385
EcoT14I	CCWWGG	2 cut(s)	233, 523
ErhI	CCWWGG	2 cut(s)	233, 523
FaeI	CATG	7 cut(s)	61, 131, 329, 527, 547, 619, 624
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	7 cut(s)	57, 127, 325, 523, 543, 615, 620
FbaI	TGATCA	1 cut(s)	330
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	4 cut(s)	209, 399, 441, 716
FokI	GGATG	2 cut(s)	173, 296
Fsp4HI	GCNGC	4 cut(s)	209, 399, 441, 716
FspBI	CTAG	3 cut(s)	258, 402, 660
GluI	GCNGC	4 cut(s)	209, 399, 441, 716
HaeIII	GGCC	3 cut(s)	68, 269, 542
HapII	CCGG	2 cut(s)	352, 709
HgaI	GACGC	1 cut(s)	721
Hin1I	GRCGYC	1 cut(s)	713
Hin1II	CATG	7 cut(s)	61, 131, 329, 527, 547, 619, 624
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	3 cut(s)	196, 227, 303
HpaII	CCGG	2 cut(s)	352, 709
HphI	GGTGA	2 cut(s)	46, 741
Hpy166II	GTNNAC	2 cut(s)	166, 597
Hpy188I	TCNGA	6 cut(s)	106, 175, 319, 483, 553, 693
Hpy188III	TCNNGA	7 cut(s)	128, 152, 221, 247, 416, 563, 709
Hpy8I	GTNNAC	2 cut(s)	166, 597
Hpy99I	CGWCG	3 cut(s)	319, 343, 652
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	3 cut(s)	170, 265, 652
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	2 cut(s)	17, 299
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	713
Hsp92II	CATG	7 cut(s)	61, 131, 329, 527, 547, 619, 624
Kpn2I	TCCGGA	1 cut(s)	708
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	330, 412, 559
Lsp1109I	GCAGC	3 cut(s)	220, 385, 427
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	3 cut(s)	258, 402, 660
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	3 cut(s)	332, 414, 561
MboI	GATC	3 cut(s)	330, 412, 559
MboII	GAAGA	3 cut(s)	431, 542, 641
MlsI	TGGCCA	2 cut(s)	269, 542
MluCI	AATT	3 cut(s)	178, 567, 682
MluNI	TGGCCA	2 cut(s)	269, 542
MlyI	GAGTC	2 cut(s)	236, 297
MmeI	TCCRAC	2 cut(s)	97, 297
MnlI	CCTC	3 cut(s)	226, 429, 435
Mox20I	TGGCCA	2 cut(s)	269, 542
MroI	TCCGGA	1 cut(s)	708
MroXI	GAANNNNTTC	2 cut(s)	242, 633
MscI	TGGCCA	2 cut(s)	269, 542
MseI	TTAA	2 cut(s)	189, 766
MslI	CAYNNNNRTG	1 cut(s)	29
Msp20I	TGGCCA	2 cut(s)	269, 542
MspI	CCGG	2 cut(s)	352, 709
MspR9I	CCNGG	4 cut(s)	65, 352, 353, 387
MvaI	CCWGG	2 cut(s)	65, 387
MwoI	GCNNNNNNNGC	1 cut(s)	398
NciI	CCSGG	2 cut(s)	352, 353
NcoI	CCATGG	1 cut(s)	523
NdeII	GATC	3 cut(s)	330, 412, 559
NlaIII	CATG	7 cut(s)	61, 131, 329, 527, 547, 619, 624
NlaIV	GGNNCC	3 cut(s)	362, 384, 391
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	1 cut(s)	619
PagI	TCATGA	1 cut(s)	127
PaqCI	CACCTGC	1 cut(s)	488
PceI	AGGCCT	1 cut(s)	68
PdmI	GAANNNNTTC	2 cut(s)	242, 633
PfeI	GAWTC	1 cut(s)	196
PflFI	GACNNNGTC	1 cut(s)	652
PkrI	GCNGC	4 cut(s)	210, 400, 442, 717
PleI	GAGTC	2 cut(s)	235, 297
PpsI	GAGTC	2 cut(s)	235, 297
Psp1406I	AACGTT	1 cut(s)	111
Psp6I	CCWGG	2 cut(s)	63, 385
PspGI	CCWGG	2 cut(s)	63, 385
PspN4I	GGNNCC	3 cut(s)	362, 384, 391
PsyI	GACNNNGTC	1 cut(s)	652
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	189, 766
SatI	GCNGC	4 cut(s)	209, 399, 441, 716
Sau3AI	GATC	3 cut(s)	330, 412, 559
SchI	GAGTC	2 cut(s)	236, 297
ScrFI	CCNGG	4 cut(s)	65, 352, 353, 387
SetI	ASST	9 cut(s)	12, 114, 218, 245, 300, 381, 502, 665, 754
SfaNI	GCATC	1 cut(s)	274
SmaI	CCCGGG	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	29
Sse9I	AATT	3 cut(s)	178, 567, 682
SseBI	AGGCCT	1 cut(s)	68
SsiI	CCGC	1 cut(s)	716
SspMI	CTAG	3 cut(s)	258, 402, 660
StuI	AGGCCT	1 cut(s)	68
StyD4I	CCNGG	4 cut(s)	63, 350, 351, 385
StyI	CCWWGG	2 cut(s)	233, 523
TaaI	ACNGT	3 cut(s)	170, 265, 652
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	341, 562
TasI	AATT	3 cut(s)	178, 567, 682
TauI	GCSGC	1 cut(s)	718
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	2 cut(s)	189, 766
Tru9I	TTAA	2 cut(s)	189, 766
TscAI	CASTG	2 cut(s)	400, 497
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	3 cut(s)	208, 398, 440
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	4 cut(s)	74, 116, 137, 599
TspGWI	ACGGA	1 cut(s)	290
TspMI	CCCGGG	1 cut(s)	351
TspRI	CASTG	2 cut(s)	400, 497
Tth111I	GACNNNGTC	1 cut(s)	652
XapI	RAATTY	2 cut(s)	178, 682
XceI	RCATGY	1 cut(s)	619
XmaI	CCCGGG	1 cut(s)	351
XmiI	GTMKAC	1 cut(s)	165
XmnI	GAANNNNTTC	2 cut(s)	242, 633
XspI	CTAG	3 cut(s)	258, 402, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.