Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004811.1

Orthogroup ID

OG0002010

Physical Location & Seq

Genomic Coordinates Forward (+)

35067 .. 37394

Gene Structure 2328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atgaaaggcggtccgatcagaagagggagcctatttgatgggctgaaccacataattcctcgcataaccatatatactctcctcatggctgatgttgttaattacgggaaactacgtccacttgaatgtgtactagtgtgtcgaaattcctttgttaaagtgaatctccaaaggcagcaaacctctcctgatgagtccccaaggaaaagcttcttgaaagcaactagaactgtggccaaaacggagaaggatgcacaagtcaagctaagactctatgacccgtcggagttccatgtgatcaacccgtcgaaacagacccgggttgggaaccctgtcgggtataaggtggttcctggtgccactgctgctagtttgcttgatcctgaagaccctccccaaaagagggctgcttttacgaataaccaaatctgggtcactcaatacaatcggagtgagcagtgggcaggtgggttgtttgcttaccaaagccatggagaagatactttggccatgtggtctgacaaggatcgagaaattgagaataaagacattgtggtttggtacacattagggtttcatcacatgccatgccaagaagactttcctataatgccgatgctccctcatttacattttctaagatgtgggactcaaagttactattctagtctagaaaagcatattatggaggcaacttggcaaggtcggaaaggtggcttcccggcgacggatttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001505 GO:0006807 GO:0006809 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0017144 GO:0023052 GO:0032870 GO:0033993 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0044237 GO:0044249 GO:0044271 GO:0046209 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0072593 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

245

Amino Acids

27.94

Weight (kDa)

8.97

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	48 - 209	1.4e-47	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12270 AT4G12280 AT4G12290 AT4G12290
fragaria_vesca	FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610
malus_domestica	MD02G1257400.v1.1 MD06G1075500.v1.1 MD16G1192400.v1.1
prunus_persica	Prupe.5G078700_v2.0.a1 Prupe.5G078900_v2.0.a1
pyrus_communis	pycom09g07970 pycom13g04890 pycom15g15380 pycom15g15390
rosa_chinensis	RchiOBHm_Chr5g0060271 RchiOBHm_Chr7g0201651 RchiOBHm_Chr7g0201661
rosa_laevigata	RLG00000003658
rosa_multiflora	Rmu_sc0001512.1_g000015 Rmu_sc0004811.1_g000006 Rmu_sc0004811.1_g000008 Rmu_sc0004811.1_g000009 Rmu_sc0004811.1_g000010 Rmu_sc0004811.1_g000011
rosa_roxburghii	Rroxscaffold_3G00255130 Rroxscaffold_3G00255140 Rroxscaffold_3G00255150 Rroxscaffold_6G00396720
rosa_rugosa	Rorug07G0065300 Rorug07G0065300
rosa_samantha	Rh7AG192300 Rh7AG192500 Rh7BG194400 Rh7BG194500 Rh7BG194600 Rh7CG203500 Rh7CG203600 Rh7CG203700 Rh7DG197700
rosa_wichuraiana	Rw7G016860 Rw7G016870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	455
AccB1I	GGYRCC	1 cut(s)	356
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	2 cut(s)	374, 534
AcoI	YGGCCR	2 cut(s)	234, 507
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	2 cut(s)	132, 563
AfiI	CCNNNNNNNGG	5 cut(s)	324, 402, 403, 430, 727
AgsI	TTSAA	2 cut(s)	125, 217
AhlI	ACTAGT	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	352
AjuI	GAANNNNNNNTTGG	2 cut(s)	585, 617
AluBI	AGCT	2 cut(s)	210, 265
AluI	AGCT	2 cut(s)	210, 265
AlwI	GGATC	2 cut(s)	374, 534
Ama87I	CYCGRG	1 cut(s)	318
AoxI	GGCC	2 cut(s)	234, 507
ApeKI	GCWGC	3 cut(s)	175, 365, 407
ApoI	RAATTY	1 cut(s)	145
Asp700I	GAANNNNTTC	2 cut(s)	209, 600
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	3 cut(s)	319, 320, 722
AvaI	CYCGRG	1 cut(s)	318
AvaII	GGWCC	1 cut(s)	11
BalI	TGGCCA	2 cut(s)	236, 509
BanI	GGYRCC	1 cut(s)	356
BbsI	GAAGAC	2 cut(s)	393, 603
BbvI	GCAGC	3 cut(s)	187, 352, 394
BccI	CCATC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	354
BclI	TGATCA	1 cut(s)	297
BcnI	CCSGG	3 cut(s)	319, 320, 722
BcuI	ACTAGT	1 cut(s)	133
BfaI	CTAG	5 cut(s)	134, 225, 369, 666, 671
BfuAI	ACCTGC	1 cut(s)	455
BisI	GCNGC	3 cut(s)	176, 366, 408
BlsI	GCNGC	3 cut(s)	177, 367, 409
Bme1390I	CCNGG	4 cut(s)	319, 320, 354, 722
Bme18I	GGWCC	1 cut(s)	11
BmeT110I	CYCGRG	1 cut(s)	318
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	4 cut(s)	29, 329, 351, 358
BmrFI	CCNGG	4 cut(s)	319, 320, 354, 722
BmsI	GCATC	2 cut(s)	241, 606
BpiI	GAAGAC	2 cut(s)	393, 603
BpuMI	CCSGG	3 cut(s)	319, 320, 722
BsaJI	CCNNGG	3 cut(s)	200, 318, 490
Bsc4I	CCNNNNNNNGG	5 cut(s)	324, 402, 403, 430, 727
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	3 cut(s)	200, 318, 490
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	5 cut(s)	324, 402, 403, 430, 727
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	187, 352, 394
BshFI	GGCC	2 cut(s)	236, 509
BshNI	GGYRCC	1 cut(s)	356
BsiHKCI	CYCGRG	1 cut(s)	318
BsiSI	CCGG	2 cut(s)	319, 722
BslFI	GGGAC	2 cut(s)	181, 661
BslI	CCNNNNNNNGG	5 cut(s)	324, 402, 403, 430, 727
BsmFI	GGGAC	2 cut(s)	181, 661
BsnI	GGCC	2 cut(s)	236, 509
BsoBI	CYCGRG	1 cut(s)	318
Bsp143I	GATC	4 cut(s)	15, 297, 379, 526
Bsp19I	CCATGG	1 cut(s)	490
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	2 cut(s)	236, 509
BspLI	GGNNCC	4 cut(s)	29, 329, 351, 358
BspMI	ACCTGC	1 cut(s)	455
BspPI	GGATC	2 cut(s)	374, 534
BspT107I	GGYRCC	1 cut(s)	356
BssECI	CCNNGG	3 cut(s)	200, 318, 490
BssMI	GATC	4 cut(s)	15, 297, 379, 526
BssT1I	CCWWGG	2 cut(s)	200, 490
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	16
BstDEI	CTNAG	2 cut(s)	266, 638
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	4 cut(s)	18, 300, 382, 529
BstMBI	GATC	4 cut(s)	15, 297, 379, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	354
BstNSI	RCATGY	1 cut(s)	586
BstSCI	CCNGG	4 cut(s)	317, 318, 352, 720
BstV1I	GCAGC	3 cut(s)	187, 352, 394
BstV2I	GAAGAC	2 cut(s)	393, 603
BstXI	CCANNNNNNTGG	1 cut(s)	491
BsuRI	GGCC	2 cut(s)	236, 509
BtgI	CCRYGG	1 cut(s)	490
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	2 cut(s)	360, 464
BtsIMutI	CAGTG	2 cut(s)	360, 464
BveI	ACCTGC	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	11
Cfr9I	CCCGGG	1 cut(s)	318
CpoI	CGGWCCG	1 cut(s)	11
Csp6I	GTAC	2 cut(s)	131, 562
CspI	CGGWCCG	1 cut(s)	11
CviAII	CATG	6 cut(s)	85, 293, 491, 511, 583, 588
CviQI	GTAC	2 cut(s)	131, 562
DdeI	CTNAG	2 cut(s)	266, 638
DpnI	GATC	4 cut(s)	17, 299, 381, 528
DpnII	GATC	4 cut(s)	15, 297, 379, 526
EaeI	YGGCCR	2 cut(s)	234, 507
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco130I	CCWWGG	2 cut(s)	200, 490
Eco47I	GGWCC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	405
Eco88I	CYCGRG	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	352
EcoT14I	CCWWGG	2 cut(s)	200, 490
ErhI	CCWWGG	2 cut(s)	200, 490
FaeI	CATG	6 cut(s)	88, 296, 494, 514, 586, 591
FaqI	GGGAC	2 cut(s)	181, 661
FatI	CATG	6 cut(s)	84, 292, 490, 510, 582, 587
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	3 cut(s)	176, 366, 408
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	3 cut(s)	176, 366, 408
FspBI	CTAG	5 cut(s)	134, 225, 369, 666, 671
GluI	GCNGC	3 cut(s)	176, 366, 408
HaeIII	GGCC	2 cut(s)	236, 509
HapII	CCGG	2 cut(s)	319, 722
Hin1II	CATG	6 cut(s)	88, 296, 494, 514, 586, 591
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	4 cut(s)	163, 194, 270, 649
HpaII	CCGG	2 cut(s)	319, 722
Hpy166II	GTNNAC	3 cut(s)	119, 131, 564
Hpy188I	TCNGA	6 cut(s)	15, 20, 286, 450, 520, 708
Hpy188III	TCNNGA	5 cut(s)	188, 214, 383, 530, 671
Hpy8I	GTNNAC	3 cut(s)	119, 131, 564
Hpy99I	CGWCG	3 cut(s)	286, 310, 730
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	2 cut(s)	266, 638
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	6 cut(s)	88, 296, 494, 514, 586, 591
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	4 cut(s)	15, 297, 379, 526
LmnI	GCTCC	2 cut(s)	27, 624
LpnPI	CCDG	8 cut(s)	201, 332, 339, 345, 366, 396, 415, 450
Lsp1109I	GCAGC	3 cut(s)	187, 352, 394
LweI	GCATC	2 cut(s)	241, 606
MaeI	CTAG	5 cut(s)	134, 225, 369, 666, 671
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	2 cut(s)	433, 656
MalI	GATC	4 cut(s)	17, 299, 381, 528
MboI	GATC	4 cut(s)	15, 297, 379, 526
MboII	GAAGA	4 cut(s)	33, 398, 509, 608
MlsI	TGGCCA	2 cut(s)	236, 509
MluCI	AATT	4 cut(s)	54, 100, 145, 534
MluNI	TGGCCA	2 cut(s)	236, 509
MlyI	GAGTC	3 cut(s)	203, 264, 643
MmeI	TCCRAC	2 cut(s)	264, 686
MnlI	CCTC	8 cut(s)	17, 69, 92, 193, 396, 402, 633, 682
Mox20I	TGGCCA	2 cut(s)	236, 509
MroXI	GAANNNNTTC	2 cut(s)	209, 600
MscI	TGGCCA	2 cut(s)	236, 509
MseI	TTAA	2 cut(s)	99, 156
MslI	CAYNNNNRTG	1 cut(s)	124
Msp20I	TGGCCA	2 cut(s)	236, 509
MspI	CCGG	2 cut(s)	319, 722
MspR9I	CCNGG	4 cut(s)	319, 320, 354, 722
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	1 cut(s)	365
NciI	CCSGG	3 cut(s)	319, 320, 722
NcoI	CCATGG	1 cut(s)	490
NdeII	GATC	4 cut(s)	15, 297, 379, 526
NlaIII	CATG	6 cut(s)	88, 296, 494, 514, 586, 591
NlaIV	GGNNCC	4 cut(s)	29, 329, 351, 358
NmuCI	GTSAC	1 cut(s)	433
NspI	RCATGY	1 cut(s)	586
PaqCI	CACCTGC	1 cut(s)	455
PdmI	GAANNNNTTC	2 cut(s)	209, 600
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	177, 367, 409
PleI	GAGTC	3 cut(s)	202, 264, 643
PpsI	GAGTC	3 cut(s)	202, 264, 643
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	4 cut(s)	29, 329, 351, 358
PspPI	GGNCC	1 cut(s)	11
RsaI	GTAC	2 cut(s)	132, 563
RsaNI	GTAC	2 cut(s)	131, 562
RseI	CAYNNNNRTG	1 cut(s)	124
Rsr2I	CGGWCCG	1 cut(s)	11
RsrII	CGGWCCG	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	99, 156
SatI	GCNGC	3 cut(s)	176, 366, 408
Sau3AI	GATC	4 cut(s)	15, 297, 379, 526
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	3 cut(s)	203, 264, 643
ScrFI	CCNGG	4 cut(s)	319, 320, 354, 722
SetI	ASST	8 cut(s)	118, 185, 212, 267, 348, 469, 706, 715
SfaNI	GCATC	2 cut(s)	241, 606
SinI	GGWCC	1 cut(s)	11
SmaI	CCCGGG	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	124
SpeI	ACTAGT	1 cut(s)	133
Sse9I	AATT	4 cut(s)	54, 100, 145, 534
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	5 cut(s)	134, 225, 369, 666, 671
StyD4I	CCNGG	4 cut(s)	317, 318, 352, 720
StyI	CCWWGG	2 cut(s)	200, 490
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	3 cut(s)	142, 308, 529
TasI	AATT	4 cut(s)	54, 100, 145, 534
TatI	WGTACW	1 cut(s)	130
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	99, 156
Tru9I	TTAA	2 cut(s)	99, 156
TscAI	CASTG	2 cut(s)	367, 464
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	3 cut(s)	175, 365, 407
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	2 cut(s)	17, 566
TspGWI	ACGGA	1 cut(s)	257
TspMI	CCCGGG	1 cut(s)	318
TspRI	CASTG	2 cut(s)	367, 464
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	1 cut(s)	145
XbaI	TCTAGA	1 cut(s)	670
XceI	RCATGY	1 cut(s)	586
XmaI	CCCGGG	1 cut(s)	318
XmnI	GAANNNNTTC	2 cut(s)	209, 600
XspI	CTAG	5 cut(s)	134, 225, 369, 666, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.