Rmu_sc0005329.1_g000032
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005329.1
OG0003200
Physical Location & Seq
Reverse (-)
156619 .. 157737
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 807 bp
atgccgaaaagccgcaaaagaaggcagcaggtggaggttgaccaccacccaaaacctccaaccaaaacacccaaaaccaccaaagagacgccaagggacccatacccgaatcacgcccgacccacccgagaagaatgcgtgtccgtccgagacgacctcttggccctccacggcttcccccaagagttcgccaagtaccgagaacagcgactgagttctcaagcatccaacggctgcgtccctgccgtcagttcagagccgtcggatgaaaaagaggtgaactggttgggaaaaattcggcatcaaaacatcatcaaacttttgggttactgtgttcatggaaaaacaaggtttcttgtgtatgaaatgatgcagaatggctccttacaaactcaattgtatggtatgaactttctattgaaggaaaagctttgcttggagtacctgcgagatttgtcagttgatgaaattaaggctgagctctctcatttcaaaggaataggtccaaaaacggtggcttgtgttttaatgttccaacttcagcaagatgattttcctgtggacacccatgtgtttgagattgcaaaggctatggcttgggttccagttggagcagacaggaataagacatatcttcatcttaaccaatggataccagatgaacttaaatttgatctgaactgccttctgtatacacatggtaagctctgccgcaagtgcatcaagaaaggaggtagcactggtaagcagcaagaaaaggaatccgaggatatcaattcctgtcctttggtacgttactgcaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

268

Amino Acids

30.89

Weight (kDa)

8.9

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 91 - 150 6.8e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 19
Acc36I ACCTGC 2 cut(s) 19, 453
AccI GTMKAC 1 cut(s) 692
AciI CCGC 2 cut(s) 13, 712
AcsI RAATTY 2 cut(s) 294, 668
AcuI CTGAAG 1 cut(s) 524
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 3 cut(s) 197, 443, 792
AgsI TTSAA 2 cut(s) 421, 493
AleI CACNNNNGTG 1 cut(s) 569
AluBI AGCT 3 cut(s) 430, 481, 706
AluI AGCT 3 cut(s) 430, 481, 706
Alw21I GWGCWC 1 cut(s) 483
Alw26I GTCTC 2 cut(s) 80, 144
AlwNI CAGNNNCTG 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 126
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 3 cut(s) 25, 234, 748
ApoI RAATTY 2 cut(s) 294, 668
AspS9I GGNCC 3 cut(s) 97, 163, 503
AsuHPI GGTGA 1 cut(s) 289
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 2 cut(s) 97, 503
BanII GRGCYC 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 483
BbvI GCAGC 3 cut(s) 37, 221, 760
BceAI ACGGC 4 cut(s) 187, 230, 244, 247
BcgI CGANNNNNNTGC 2 cut(s) 117, 151
BciVI GTATCC 1 cut(s) 645
BcoDI GTCTC 2 cut(s) 80, 144
BfuAI ACCTGC 2 cut(s) 19, 453
BfuI GTATCC 1 cut(s) 645
BisI GCNGC 5 cut(s) 13, 26, 235, 712, 749
BlpI GCTNAGC 1 cut(s) 477
BlsI GCNGC 5 cut(s) 14, 27, 236, 713, 750
Bme18I GGWCC 2 cut(s) 97, 503
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 3 cut(s) 97, 163, 503
BmiI GGNNCC 4 cut(s) 98, 99, 382, 603
BmsI GCATC 4 cut(s) 233, 310, 360, 729
BplI GAGNNNNNCTC 2 cut(s) 141, 173
Bpu1102I GCTNAGC 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 89
BsaJI CCNNGG 3 cut(s) 92, 169, 765
Bse1I ACTGG 3 cut(s) 287, 605, 745
BseDI CCNNGG 3 cut(s) 92, 169, 765
BseGI GGATG 2 cut(s) 224, 271
BseMII CTCAG 2 cut(s) 203, 468
BseNI ACTGG 3 cut(s) 287, 605, 745
BseXI GCAGC 3 cut(s) 37, 221, 760
BshFI GGCC 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 483
BsiHKCI CYCGRG 1 cut(s) 126
BslFI GGGAC 2 cut(s) 110, 224
BsmAI GTCTC 2 cut(s) 80, 144
BsmBI CGTCTC 2 cut(s) 80, 144
BsmFI GGGAC 2 cut(s) 110, 224
BsmI GAATGC 1 cut(s) 140
BsnI GGCC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 483
Bsp143I GATC 1 cut(s) 673
Bsp1720I GCTNAGC 1 cut(s) 477
BspACI CCGC 2 cut(s) 13, 712
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 2 cut(s) 204, 469
BspLI GGNNCC 4 cut(s) 98, 99, 382, 603
BspMI ACCTGC 2 cut(s) 19, 453
BsrI ACTGG 3 cut(s) 287, 605, 745
BssECI CCNNGG 3 cut(s) 92, 169, 765
BssMI GATC 1 cut(s) 673
BssNAI GTATAC 1 cut(s) 693
BssNI GRCGYC 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 92
Bst1107I GTATAC 1 cut(s) 693
Bst4CI ACNGT 2 cut(s) 332, 514
BstACI GRCGYC 1 cut(s) 89
BstDEI CTNAG 2 cut(s) 212, 477
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 2 cut(s) 224, 271
BstKTI GATC 1 cut(s) 676
BstMAI GTCTC 2 cut(s) 80, 144
BstMBI GATC 1 cut(s) 673
BstMWI GCNNNNNNNGC 1 cut(s) 717
BstV1I GCAGC 3 cut(s) 37, 221, 760
BstZ17I GTATAC 1 cut(s) 693
BsuI GTATCC 1 cut(s) 645
BsuRI GGCC 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 169
BtsCI GGATG 2 cut(s) 224, 271
BtsIMutI CAGTG 1 cut(s) 738
BveI ACCTGC 2 cut(s) 19, 453
CaiI CAGNNNCTG 1 cut(s) 211
Cfr13I GGNCC 3 cut(s) 97, 163, 503
CseI GACGC 2 cut(s) 97, 226
Csp6I GTAC 3 cut(s) 196, 442, 791
CspCI CAANNNNNGTGG 2 cut(s) 495, 530
CviAII CATG 3 cut(s) 338, 569, 698
CviQI GTAC 3 cut(s) 196, 442, 791
DdeI CTNAG 2 cut(s) 212, 477
DpnI GATC 1 cut(s) 675
DpnII GATC 1 cut(s) 673
Ecl136II GAGCTC 1 cut(s) 481
Eco130I CCWWGG 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 483
Eco32I GATATC 1 cut(s) 772
Eco47I GGWCC 2 cut(s) 97, 503
Eco53kI GAGCTC 1 cut(s) 481
Eco57I CTGAAG 1 cut(s) 524
Eco88I CYCGRG 1 cut(s) 126
EcoICRI GAGCTC 1 cut(s) 481
EcoO109I RGGNCCY 1 cut(s) 97
EcoRV GATATC 1 cut(s) 772
EcoT14I CCWWGG 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 92
Esp3I CGTCTC 2 cut(s) 80, 144
FaeI CATG 3 cut(s) 341, 572, 701
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 2 cut(s) 110, 224
FatI CATG 3 cut(s) 337, 568, 697
FblI GTMKAC 1 cut(s) 692
Fnu4HI GCNGC 5 cut(s) 13, 26, 235, 712, 749
FokI GGATG 2 cut(s) 211, 278
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 5 cut(s) 13, 26, 235, 712, 749
GluI GCNGC 5 cut(s) 13, 26, 235, 712, 749
HaeIII GGCC 1 cut(s) 164
HgaI GACGC 2 cut(s) 97, 226
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 3 cut(s) 341, 572, 701
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 2 cut(s) 109, 761
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 4 cut(s) 40, 280, 562, 693
Hpy188I TCNGA 5 cut(s) 149, 256, 265, 678, 766
Hpy188III TCNNGA 1 cut(s) 724
Hpy8I GTNNAC 4 cut(s) 40, 280, 562, 693
Hpy99I CGWCG 1 cut(s) 265
HpyAV CCTTC 3 cut(s) 15, 415, 695
HpyCH4III ACNGT 2 cut(s) 332, 514
HpyCH4IV ACGT 1 cut(s) 793
HpyCH4V TGCA 4 cut(s) 373, 584, 720, 801
HpyF10VI GCNNNNNNNGC 1 cut(s) 717
HpyF3I CTNAG 2 cut(s) 212, 477
HpySE526I ACGT 1 cut(s) 793
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 3 cut(s) 341, 572, 701
KflI GGGWCCC 1 cut(s) 97
Kzo9I GATC 1 cut(s) 673
LmnI GCTCC 2 cut(s) 386, 611
Lsp1109I GCAGC 3 cut(s) 37, 221, 760
LweI GCATC 4 cut(s) 233, 310, 360, 729
MaeII ACGT 1 cut(s) 793
MaeIII GTNAC 2 cut(s) 326, 794
MalI GATC 1 cut(s) 675
MboI GATC 1 cut(s) 673
MboII GAAGA 2 cut(s) 143, 626
MfeI CAATTG 1 cut(s) 395
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 5 cut(s) 294, 395, 468, 668, 775
MmeI TCCRAC 5 cut(s) 83, 243, 252, 559, 589
MnlI CCTC 7 cut(s) 28, 66, 167, 176, 268, 725, 760
MseI TTAA 4 cut(s) 471, 527, 642, 666
MslI CAYNNNNRTG 1 cut(s) 569
MunI CAATTG 1 cut(s) 395
Mva1269I GAATGC 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 717
NdeII GATC 1 cut(s) 673
NlaIII CATG 3 cut(s) 341, 572, 701
NlaIV GGNNCC 4 cut(s) 98, 99, 382, 603
OliI CACNNNNGTG 1 cut(s) 569
PaqCI CACCTGC 1 cut(s) 19
PctI GAATGC 1 cut(s) 140
PfeI GAWTC 2 cut(s) 109, 761
PkrI GCNGC 5 cut(s) 14, 27, 236, 713, 750
PpuMI RGGWCCY 1 cut(s) 97
Psp124BI GAGCTC 1 cut(s) 483
Psp5II RGGWCCY 1 cut(s) 97
PspN4I GGNNCC 4 cut(s) 98, 99, 382, 603
PspPI GGNCC 3 cut(s) 97, 163, 503
PspPPI RGGWCCY 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 211
RsaI GTAC 3 cut(s) 197, 443, 792
RsaNI GTAC 3 cut(s) 196, 442, 791
RseI CAYNNNNRTG 1 cut(s) 569
SacI GAGCTC 1 cut(s) 483
SaqAI TTAA 4 cut(s) 471, 527, 642, 666
SatI GCNGC 5 cut(s) 13, 26, 235, 712, 749
Sau3AI GATC 1 cut(s) 673
Sau96I GGNCC 3 cut(s) 97, 163, 503
SduI GDGCHC 1 cut(s) 483
SfaNI GCATC 4 cut(s) 233, 310, 360, 729
SinI GGWCC 2 cut(s) 97, 503
SmiMI CAYNNNNRTG 1 cut(s) 569
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
Sse9I AATT 5 cut(s) 294, 395, 468, 668, 775
SsiI CCGC 2 cut(s) 13, 712
SstI GAGCTC 1 cut(s) 483
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 2 cut(s) 332, 514
TaiI ACGT 1 cut(s) 796
TasI AATT 5 cut(s) 294, 395, 468, 668, 775
TauI GCSGC 2 cut(s) 15, 714
TfiI GAWTC 2 cut(s) 109, 761
Tru1I TTAA 4 cut(s) 471, 527, 642, 666
Tru9I TTAA 4 cut(s) 471, 527, 642, 666
TscAI CASTG 1 cut(s) 745
TseI GCWGC 3 cut(s) 25, 234, 748
TspDTI ATGAA 7 cut(s) 282, 326, 378, 422, 480, 626, 675
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 1 cut(s) 745
VpaK11BI GGWCC 2 cut(s) 97, 503
XapI RAATTY 2 cut(s) 294, 668
XmiI GTMKAC 1 cut(s) 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.