Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005370.1

Orthogroup ID

OG0002632

Physical Location & Seq

Genomic Coordinates Reverse (-)

2253 .. 5333

Gene Structure 3081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atgcctagagatgctgtacatctaggagatgtagaacaccgggagttacataacgcctatggttactactttcacatggctacagcagatgggcttgttcagcgaggtgatggaagggataggccatttgttttatcgagagcagtatttgctggaagtcaaaggcatggagcaatatggacgggagataatacagctgaatgggatcacctcagggtttcagttccgatgattttgactcttggtcttactgggatatcattctctggtgctgatgtgggtgggtattttggcaatccggaacctgagttgtgggttcgttggtatcaattaggagcctactatcctttctttagaggtcatgctcaccatgacaccaaaagacgagaaccatggttatttggagaaaaaaatactgaacgtataagggaggctatacacatccgttacatgttgcttccatacttttacacattattcagagaggcaaacaccagtggcattccagttgctcgtccattgtggatggagtttccttccgaggaggctactttcacaaatgatgaggctctcatgattggaaacagtcttttggtacaagggatctatacagagcatgcaaaacatgcttctgtttatttgcctgggaaagaatcatggtatgatgtgaaaactggagcagcttacaagggaggtaagacccataagctggatgttaatgaagagggtgttcctgctttccagagggctgggactatcataccaaggaaagaccgctttcgtcggagttccacccagatggtgaacgatccatacactctggtgatagcactgaatagttcacaagcagctgaaggtgaactctatgtggatgatggaaaaagcttcgagtttcagcaaggatcctatatccatcgtcgctttgttttcgcagatgggaagcttacatctcttaatctggcacctgcacaaacccaattttcttcagaatgtgttattgagaggattattctgcaaggcctgtctacgaggcaaaagagtgcgctaattgaaccggcaaatcaaaaggctgagattgaacggggcccacttctcctttattcaaggcagggaccatcagtgttaacggttcgtaagcctaatgttcggatagcagatgattgggtcataaaaatattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000902 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005975 GO:0005976 GO:0006073 GO:0006464 GO:0006491 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009250 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0015926 GO:0016043 GO:0016049 GO:0016051 GO:0016787 GO:0016798 GO:0019538 GO:0030243 GO:0030244 GO:0030587 GO:0031288 GO:0032502 GO:0032989 GO:0033692 GO:0033919 GO:0034637 GO:0034645 GO:0036211 GO:0040007 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043687 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0051274 GO:0051703 GO:0051704 GO:0051707 GO:0060560 GO:0071704 GO:0071840 GO:0090599 GO:0090600 GO:0090702 GO:0098542 GO:0099120 GO:1901135 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04141 map00510 map01100 map04141

Pfam Domains

Protein Families

DUF5110 Gal_mutarotas_2 Glyco_hydro_31

Protein Analysis

393

Amino Acids

44.6

Weight (kDa)

7.27

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_31_2nd	PF01055	7 - 159	3.9e-62	Glycosyl hydrolases family 31 TIM-barrel domain
Glyco_hydro_31_3rd	PF21365	167 - 254	5.9e-24	Glycosyl hydrolase family 31 C-terminal domain
DUF5110	PF17137	273 - 329	6.2e-06	Domain of unknown function (DUF5110)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63840 AT5G63840
fragaria_vesca	FvH4_1g25070
malus_domestica	MD01G1007800.v1.1 MD01G1007900.v1.1 MD15G1135800.v1.1
prunus_persica	Prupe.4G277800_v2.0.a1 Prupe.4G277800_v2.0.a1
pyrus_communis	pycom15g12240 pycom520g00330
rosa_chinensis	RchiOBHm_Chr2g0122711 RchiOBHm_Chr2g0122721
rosa_laevigata	RLG00000018707 RLG00000018709
rosa_multiflora	Rmu_sc0005370.1_g000002 Rmu_sc0008259.1_g000009 Rmu_sc0008259.1_g000014 Rmu_sc0017734.1_g000006 Rmu_sc0026486.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031190 Rroxscaffold_2G00121270 Rroxscaffold_2G00121280 Rroxscaffold_4G00297410 Rroxscaffold_4G00317480 Rroxscaffold_4G00325980 Rroxscaffold_7G00197700 Rroxscaffold_7G00199130
rosa_rugosa	Rorug02G0241800 Rorug02G0241800 Rorug02G0241900 Rorug02G0242000 Rorug02G0242100
rosa_samantha	Rh2AG300300 Rh2BG308200 Rh2CG286400 Rh2CG286900 Rh2DG324500
rosa_wichuraiana	Rw2G023850 Rw2G023860 Rw2G024040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	973
Acc36I	ACCTGC	1 cut(s)	973
AccB1I	GGYRCC	1 cut(s)	961
AccB7I	CCANNNNNTGG	1 cut(s)	709
AccI	GTMKAC	1 cut(s)	1025
AccIII	TCCGGA	1 cut(s)	298
AciI	CCGC	1 cut(s)	775
AclWI	GGATC	5 cut(s)	213, 611, 803, 897, 910
AcuI	CTGAAG	2 cut(s)	873, 969
AfaI	GTAC	2 cut(s)	18, 597
AfiI	CCNNNNNNNGG	1 cut(s)	709
AflIII	ACRYGT	1 cut(s)	450
AgsI	TTSAA	3 cut(s)	1052, 1079, 1104
AhdI	GACNNNNNGTC	1 cut(s)	243
AjnI	CCWGG	1 cut(s)	643
AleI	CACNNNNGTG	1 cut(s)	821
AluBI	AGCT	6 cut(s)	197, 683, 709, 851, 885, 943
AluI	AGCT	6 cut(s)	197, 683, 709, 851, 885, 943
AlwI	GGATC	5 cut(s)	213, 611, 803, 897, 910
Aor13HI	TCCGGA	1 cut(s)	298
AoxI	GGCC	3 cut(s)	122, 1018, 1084
ApaI	GGGCCC	1 cut(s)	1088
ApeKI	GCWGC	2 cut(s)	680, 848
AspLEI	GCGC	1 cut(s)	1045
AspS9I	GGNCC	3 cut(s)	1084, 1085, 1112
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	6 cut(s)	119, 200, 359, 814, 835, 869
AvaII	GGWCC	1 cut(s)	1112
AxyI	CCTNAGG	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	1088
BamHI	GGATCC	1 cut(s)	902
BanI	GGYRCC	1 cut(s)	961
BanII	GRGCYC	1 cut(s)	1088
BbvI	GCAGC	2 cut(s)	692, 860
BccI	CCATC	8 cut(s)	83, 104, 520, 793, 869, 921, 929, 1123
BciT130I	CCWGG	1 cut(s)	645
BcnI	CCSGG	1 cut(s)	41
BfaI	CTAG	2 cut(s)	6, 23
BfmI	CTRYAG	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	973
BisI	GCNGC	2 cut(s)	681, 849
BlsI	GCNGC	2 cut(s)	682, 850
Bme1390I	CCNGG	2 cut(s)	41, 645
Bme18I	GGWCC	1 cut(s)	1112
BmeRI	GACNNNNNGTC	1 cut(s)	243
BmgT120I	GGNCC	3 cut(s)	1084, 1085, 1112
BmiI	GGNNCC	7 cut(s)	303, 337, 904, 963, 1085, 1086, 1113
BmrFI	CCNGG	2 cut(s)	41, 645
BmrI	ACTGGG	1 cut(s)	261
BmuI	ACTGGG	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	696
BpuMI	CCSGG	1 cut(s)	41
BsaJI	CCNNGG	4 cut(s)	392, 540, 644, 764
BsaWI	WCCGGW	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	1 cut(s)	709
Bse118I	RCCGGY	1 cut(s)	1054
Bse1I	ACTGG	4 cut(s)	256, 495, 506, 679
Bse21I	CCTNAGG	1 cut(s)	212
BseAI	TCCGGA	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	645
BseDI	CCNNGG	4 cut(s)	392, 540, 644, 764
BseGI	GGATG	4 cut(s)	441, 531, 718, 877
BseLI	CCNNNNNNNGG	1 cut(s)	709
BseMII	CTCAG	3 cut(s)	226, 297, 1062
BseNI	ACTGG	4 cut(s)	256, 495, 506, 679
BseRI	GAGGAG	1 cut(s)	557
BseSI	GKGCMC	1 cut(s)	1088
BseXI	GCAGC	2 cut(s)	692, 860
BseYI	CCCAGC	1 cut(s)	749
BsgI	GTGCAG	1 cut(s)	951
BshFI	GGCC	3 cut(s)	124, 1020, 1086
BshNI	GGYRCC	1 cut(s)	961
BsiSI	CCGG	3 cut(s)	40, 299, 1055
BslFI	GGGAC	2 cut(s)	766, 1125
BslI	CCNNNNNNNGG	1 cut(s)	709
BsmFI	GGGAC	2 cut(s)	766, 1125
BsmI	GAATGC	1 cut(s)	501
BsnI	GGCC	3 cut(s)	124, 1020, 1086
Bsp120I	GGGCCC	1 cut(s)	1084
Bsp1286I	GDGCHC	1 cut(s)	1088
Bsp13I	TCCGGA	1 cut(s)	298
Bsp1407I	TGTACA	1 cut(s)	16
Bsp143I	GATC	4 cut(s)	205, 603, 808, 902
Bsp19I	CCATGG	1 cut(s)	392
BspACI	CCGC	1 cut(s)	775
BspANI	GGCC	3 cut(s)	124, 1020, 1086
BspCNI	CTCAG	3 cut(s)	225, 298, 1063
BspEI	TCCGGA	1 cut(s)	298
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	7 cut(s)	303, 337, 904, 963, 1085, 1086, 1113
BspMI	ACCTGC	1 cut(s)	973
BspPI	GGATC	5 cut(s)	213, 611, 803, 897, 910
BspT107I	GGYRCC	1 cut(s)	961
BsrFI	RCCGGY	1 cut(s)	1054
BsrGI	TGTACA	1 cut(s)	16
BsrI	ACTGG	4 cut(s)	256, 495, 506, 679
BssAI	RCCGGY	1 cut(s)	1054
BssECI	CCNNGG	4 cut(s)	392, 540, 644, 764
BssMI	GATC	4 cut(s)	205, 603, 808, 902
BssT1I	CCWWGG	2 cut(s)	392, 764
Bst2UI	CCWGG	1 cut(s)	645
Bst4CI	ACNGT	2 cut(s)	587, 1129
Bst6I	CTCTTC	1 cut(s)	717
BstAPI	GCANNNNNTGC	2 cut(s)	149, 626
BstAUI	TGTACA	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	3 cut(s)	212, 306, 1071
BstDSI	CCRYGG	1 cut(s)	392
BstF5I	GGATG	4 cut(s)	441, 531, 718, 877
BstHHI	GCGC	1 cut(s)	1045
BstKTI	GATC	4 cut(s)	208, 606, 811, 905
BstMBI	GATC	4 cut(s)	205, 603, 808, 902
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 149, 626
BstNI	CCWGG	1 cut(s)	645
BstNSI	RCATGY	3 cut(s)	454, 620, 629
BstSCI	CCNGG	2 cut(s)	39, 643
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	1088
BstV1I	GCAGC	2 cut(s)	692, 860
BstX2I	RGATCY	2 cut(s)	603, 902
BstXI	CCANNNNNNTGG	2 cut(s)	749, 799
BstYI	RGATCY	2 cut(s)	603, 902
Bsu36I	CCTNAGG	1 cut(s)	212
BsuRI	GGCC	3 cut(s)	124, 1020, 1086
BtgI	CCRYGG	1 cut(s)	392
BtsCI	GGATG	4 cut(s)	441, 531, 718, 877
BtsIMutI	CAGTG	3 cut(s)	502, 830, 1125
BveI	ACCTGC	1 cut(s)	973
Cac8I	GCNNGC	1 cut(s)	618
CciI	TCATGA	1 cut(s)	573
CfoI	GCGC	1 cut(s)	1045
Cfr10I	RCCGGY	1 cut(s)	1054
Cfr13I	GGNCC	3 cut(s)	1084, 1085, 1112
Csp6I	GTAC	2 cut(s)	17, 596
CviQI	GTAC	2 cut(s)	17, 596
DdeI	CTNAG	3 cut(s)	212, 306, 1071
DpnI	GATC	4 cut(s)	207, 605, 810, 904
DpnII	GATC	4 cut(s)	205, 603, 808, 902
DriI	GACNNNNNGTC	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	717
Eam1105I	GACNNNNNGTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	717
Eco130I	CCWWGG	2 cut(s)	392, 764
Eco147I	AGGCCT	1 cut(s)	1020
Eco24I	GRGCYC	1 cut(s)	1088
Eco32I	GATATC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	1112
Eco57I	CTGAAG	2 cut(s)	873, 969
Eco81I	CCTNAGG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	1084
EcoRII	CCWGG	1 cut(s)	643
EcoRV	GATATC	1 cut(s)	258
EcoT14I	CCWWGG	2 cut(s)	392, 764
EcoT38I	GRGCYC	1 cut(s)	1088
ErhI	CCWWGG	2 cut(s)	392, 764
FaqI	GGGAC	2 cut(s)	766, 1125
FblI	GTMKAC	1 cut(s)	1025
Fnu4HI	GCNGC	2 cut(s)	681, 849
FokI	GGATG	4 cut(s)	428, 538, 725, 884
FriOI	GRGCYC	1 cut(s)	1088
Fsp4HI	GCNGC	2 cut(s)	681, 849
FspBI	CTAG	2 cut(s)	6, 23
GlaI	GCGC	1 cut(s)	1044
GluI	GCNGC	2 cut(s)	681, 849
GsaI	CCCAGC	1 cut(s)	753
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	3 cut(s)	124, 1020, 1086
HapII	CCGG	3 cut(s)	40, 299, 1055
HhaI	GCGC	1 cut(s)	1045
Hin6I	GCGC	1 cut(s)	1043
HinP1I	GCGC	1 cut(s)	1043
HincII	GTYRAC	1 cut(s)	1125
HindII	GTYRAC	1 cut(s)	1125
HindIII	AAGCTT	2 cut(s)	883, 941
HinfI	GANTC	2 cut(s)	238, 653
HpaI	GTTAAC	1 cut(s)	1125
HpaII	CCGG	3 cut(s)	40, 299, 1055
HphI	GGTGA	6 cut(s)	119, 200, 359, 814, 835, 869
Hpy166II	GTNNAC	5 cut(s)	805, 842, 860, 1026, 1125
Hpy188I	TCNGA	6 cut(s)	228, 482, 541, 786, 988, 1149
Hpy188III	TCNNGA	4 cut(s)	138, 299, 574, 742
Hpy8I	GTNNAC	5 cut(s)	805, 842, 860, 1026, 1125
Hpy99I	CGWCG	2 cut(s)	786, 921
HpyAV	CCTTC	3 cut(s)	108, 546, 848
HpyCH4III	ACNGT	2 cut(s)	587, 1129
HpyCH4IV	ACGT	1 cut(s)	421
HpyCH4V	TGCA	3 cut(s)	620, 968, 1015
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 149, 626
HpyF3I	CTNAG	3 cut(s)	212, 306, 1071
HpySE526I	ACGT	1 cut(s)	421
HspAI	GCGC	1 cut(s)	1043
Kpn2I	TCCGGA	1 cut(s)	298
KspAI	GTTAAC	1 cut(s)	1125
Kzo9I	GATC	4 cut(s)	205, 603, 808, 902
LmnI	GCTCC	3 cut(s)	170, 335, 677
Lsp1109I	GCAGC	2 cut(s)	692, 860
MaeI	CTAG	2 cut(s)	6, 23
MaeII	ACGT	1 cut(s)	421
MaeIII	GTNAC	3 cut(s)	45, 62, 446
MalI	GATC	4 cut(s)	207, 605, 810, 904
MboI	GATC	4 cut(s)	205, 603, 808, 902
MboII	GAAGA	2 cut(s)	734, 975
MflI	RGATCY	2 cut(s)	603, 902
MhlI	GDGCHC	1 cut(s)	1088
MluCI	AATT	3 cut(s)	329, 977, 1047
MlyI	GAGTC	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	764
MroI	TCCGGA	1 cut(s)	298
MseI	TTAA	3 cut(s)	717, 954, 1124
MslI	CAYNNNNRTG	2 cut(s)	797, 821
MspA1I	CMGCKG	2 cut(s)	197, 851
MspI	CCGG	3 cut(s)	40, 299, 1055
MspR9I	CCNGG	2 cut(s)	41, 645
Mva1269I	GAATGC	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	645
MwoI	GCNNNNNNNGC	3 cut(s)	100, 149, 626
NciI	CCSGG	1 cut(s)	41
NcoI	CCATGG	1 cut(s)	392
NdeII	GATC	4 cut(s)	205, 603, 808, 902
NlaIV	GGNNCC	7 cut(s)	303, 337, 904, 963, 1085, 1086, 1113
NspI	RCATGY	3 cut(s)	454, 620, 629
OliI	CACNNNNGTG	1 cut(s)	821
PaeI	GCATGC	1 cut(s)	620
PagI	TCATGA	1 cut(s)	573
PaqCI	CACCTGC	1 cut(s)	973
PceI	AGGCCT	1 cut(s)	1020
PciI	ACATGT	1 cut(s)	450
PctI	GAATGC	1 cut(s)	501
PfeI	GAWTC	1 cut(s)	653
PflMI	CCANNNNNTGG	1 cut(s)	709
PkrI	GCNGC	2 cut(s)	682, 850
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PscI	ACATGT	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	643
PspFI	CCCAGC	1 cut(s)	749
PspGI	CCWGG	1 cut(s)	643
PspN4I	GGNNCC	7 cut(s)	303, 337, 904, 963, 1085, 1086, 1113
PspOMI	GGGCCC	1 cut(s)	1084
PspPI	GGNCC	3 cut(s)	1084, 1085, 1112
PsrI	GAACNNNNNNTAC	2 cut(s)	797, 829
PsuI	RGATCY	2 cut(s)	603, 902
PvuII	CAGCTG	2 cut(s)	197, 851
RsaI	GTAC	2 cut(s)	18, 597
RsaNI	GTAC	2 cut(s)	17, 596
RseI	CAYNNNNRTG	2 cut(s)	797, 821
SaqAI	TTAA	3 cut(s)	717, 954, 1124
SatI	GCNGC	2 cut(s)	681, 849
Sau3AI	GATC	4 cut(s)	205, 603, 808, 902
Sau96I	GGNCC	3 cut(s)	1084, 1085, 1112
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	2 cut(s)	41, 645
SduI	GDGCHC	1 cut(s)	1088
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	1112
SmiMI	CAYNNNNRTG	2 cut(s)	797, 821
SphI	GCATGC	1 cut(s)	620
Sse9I	AATT	3 cut(s)	329, 977, 1047
SseBI	AGGCCT	1 cut(s)	1020
SsiI	CCGC	1 cut(s)	775
SspI	AATATT	1 cut(s)	1176
SspMI	CTAG	2 cut(s)	6, 23
StuI	AGGCCT	1 cut(s)	1020
StyD4I	CCNGG	2 cut(s)	39, 643
StyI	CCWWGG	2 cut(s)	392, 764
TaaI	ACNGT	2 cut(s)	587, 1129
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	2 cut(s)	137, 888
TasI	AATT	3 cut(s)	329, 977, 1047
TatI	WGTACW	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	653
Tru1I	TTAA	3 cut(s)	717, 954, 1124
Tru9I	TTAA	3 cut(s)	717, 954, 1124
TscAI	CASTG	3 cut(s)	502, 837, 1125
TseI	GCWGC	2 cut(s)	680, 848
TspDTI	ATGAA	1 cut(s)	735
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	3 cut(s)	502, 837, 1125
Van91I	CCANNNNNTGG	1 cut(s)	709
VpaK11BI	GGWCC	1 cut(s)	1112
XceI	RCATGY	3 cut(s)	454, 620, 629
XmiI	GTMKAC	1 cut(s)	1025
XspI	CTAG	2 cut(s)	6, 23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.