Rmu_sc0005601.1_g000004

Formiminotransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005601.1
OG0001831
Physical Location & Seq
Forward (+)
3677 .. 6230
2554 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1128 bp
atgcttggttgctgcaaggtgtacatatctgaaagcagaaataggcttgcactggagtcaattgagcgagctgctaagcgattctcggaagcacccgttgtcaataagtttgaagatgaaacttacaacagagttggctacactcttgtctctaagctggctccaaagccatctggggacccttgtcccttgaggatggctgtccttgccatggttaaggctgcttttgaaaccattgactttgagtcgcactgtggaagtcatccccggattggagttgtggatcatatatgctttcacccccttcttggtgcttcgttggaacagatggctggtgttgcaaactccttagcggcagatgttggctctagtcttcaagttcctacatttctatatggagctgcccatgaagagaggagggcacttgattcaattagaagagagctcggttacttcaagccaaactctagtggagaacagtgggttgggggtccaaaatcggaatacttggcactgaagccagacaaaggtccccctaaagtgactcaagagaaaggtgtcattgtgattggagcaacccagtgggtggataattataacgtccctgtccactctactgatattgctgccgttcgtagaatttcgaaacgtgtgagtggcagaggaggtggacttccttcagtccaagcaatggcccttgcgcatggtgaatctgtcacggaggtagcttgcaatttgttggaaccacaggaagtgggaggagatagggttcagcttgaagttgagaggcttgcaaaagaagaaggtttgacagtggggaagggctacttcactgatctttctcaagaaaaattaatcgaaagaggcggcgtagattctgaatcgatggcggtgaggattgtgaggcgctggatcgagacaatgcagttttgtggtggcgtggagcgcgaagatctaggtcgtggcctggcacgtacgacatggcgtctggcagatggttgtgggcctggaccgagcttgcttgatgggctatgggtggaactcttccttcagaggctcttgggctcagtaaattgggctggagttgggtgtggactctctttgtgggttcgcattgggctaggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FTCD_N Yae1_N

Protein Analysis

375

Amino Acids

40.72

Weight (kDa)

6.42

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FTCD_N PF07837 4 - 193 1.4e-53 Formiminotransferase domain, N-terminal subdomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
Acc16I TGCGCA 1 cut(s) 702
AccB7I CCANNNNNTGG 2 cut(s) 586, 691
AccII CGCG 1 cut(s) 948
AciI CCGC 3 cut(s) 353, 867, 890
AclWI GGATC 2 cut(s) 291, 920
AcsI RAATTY 1 cut(s) 639
AcuI CTGAAG 3 cut(s) 536, 663, 1034
AcyI GRCGYC 1 cut(s) 985
AfaI GTAC 2 cut(s) 23, 976
AfiI CCNNNNNNNGG 6 cut(s) 211, 272, 308, 527, 586, 691
AflIII ACRYGT 1 cut(s) 649
AgsI TTSAA 6 cut(s) 113, 230, 377, 432, 457, 779
AhdI GACNNNNNGTC 2 cut(s) 244, 984
AjnI CCWGG 2 cut(s) 966, 1006
AjuI GAANNNNNNNTTGG 2 cut(s) 468, 500
AloI GAACNNNNNNTCC 2 cut(s) 753, 785
AluBI AGCT 7 cut(s) 71, 157, 401, 445, 728, 775, 1017
AluI AGCT 7 cut(s) 71, 157, 401, 445, 728, 775, 1017
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 2 cut(s) 154, 911
AlwI GGATC 2 cut(s) 291, 920
AoxI GGCC 3 cut(s) 693, 964, 1004
ApeKI GCWGC 5 cut(s) 12, 71, 221, 401, 626
ApoI RAATTY 1 cut(s) 639
AseI ATTAAT 1 cut(s) 854
AspLEI GCGC 3 cut(s) 703, 909, 948
AspS9I GGNCC 6 cut(s) 178, 491, 530, 694, 1004, 1010
AsuC2I CCSGG 1 cut(s) 268
AsuHPI GGTGA 3 cut(s) 290, 719, 904
AsuII TTCGAA 1 cut(s) 644
AvaII GGWCC 4 cut(s) 178, 491, 530, 1010
BaeGI GKGCMC 1 cut(s) 424
BanII GRGCYC 2 cut(s) 447, 1067
BbsI GAAGAC 1 cut(s) 365
Bbv12I GWGCWC 1 cut(s) 447
BbvI GCAGC 4 cut(s) 58, 208, 388, 613
BccI CCATC 6 cut(s) 178, 190, 322, 880, 989, 1019
BceAI ACGGC 1 cut(s) 614
BciT130I CCWGG 2 cut(s) 968, 1008
BcnI CCSGG 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 154, 911
BfaI CTAG 5 cut(s) 369, 468, 956, 1121, 1126
BfoI RGCGCY 1 cut(s) 910
BglII AGATCT 1 cut(s) 952
BisI GCNGC 7 cut(s) 13, 72, 222, 354, 402, 627, 868
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 7 cut(s) 14, 73, 223, 355, 403, 628, 869
Bme1390I CCNGG 3 cut(s) 268, 968, 1008
Bme18I GGWCC 4 cut(s) 178, 491, 530, 1010
BmeRI GACNNNNNGTC 2 cut(s) 244, 984
BmgT120I GGNCC 6 cut(s) 178, 491, 530, 694, 1004, 1010
BmiI GGNNCC 6 cut(s) 162, 179, 180, 492, 532, 744
BmrFI CCNGG 3 cut(s) 268, 968, 1008
BmrI ACTGGG 1 cut(s) 574
BmuI ACTGGG 1 cut(s) 574
BoxI GACNNNNGTC 2 cut(s) 183, 528
BpiI GAAGAC 1 cut(s) 365
BpmI CTGGAG 2 cut(s) 74, 1101
Bpu10I CCTNAGC 1 cut(s) 349
Bpu1102I GCTNAGC 1 cut(s) 75
Bpu14I TTCGAA 1 cut(s) 644
BpuEI CTTGAG 3 cut(s) 211, 531, 828
BpuMI CCSGG 1 cut(s) 268
Bsa29I ATCGAT 1 cut(s) 884
BsaAI YACGTR 1 cut(s) 974
BsaHI GRCGYC 1 cut(s) 985
BsaJI CCNNGG 2 cut(s) 210, 266
BsaXI ACNNNNNCTCC 2 cut(s) 753, 783
Bsc4I CCNNNNNNNGG 6 cut(s) 211, 272, 308, 527, 586, 691
Bse1I ACTGG 2 cut(s) 57, 580
Bse3DI GCAATG 1 cut(s) 696
BseBI CCWGG 2 cut(s) 968, 1008
BseCI ATCGAT 1 cut(s) 884
BseDI CCNNGG 2 cut(s) 210, 266
BseGI GGATG 2 cut(s) 201, 262
BseLI CCNNNNNNNGG 6 cut(s) 211, 272, 308, 527, 586, 691
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 1 cut(s) 1080
BseNI ACTGG 2 cut(s) 57, 580
BseRI GAGGAG 3 cut(s) 430, 678, 774
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 4 cut(s) 58, 208, 388, 613
Bsh1236I CGCG 1 cut(s) 948
BshFI GGCC 3 cut(s) 695, 966, 1006
BshVI ATCGAT 1 cut(s) 884
BsiHKAI GWGCWC 1 cut(s) 447
BsiSI CCGG 1 cut(s) 268
BsiWI CGTACG 1 cut(s) 974
BslFI GGGAC 4 cut(s) 171, 191, 516, 587
BslI CCNNNNNNNGG 6 cut(s) 211, 272, 308, 527, 586, 691
BsmAI GTCTC 2 cut(s) 154, 911
BsmFI GGGAC 4 cut(s) 171, 191, 516, 587
BsnI GGCC 3 cut(s) 695, 966, 1006
Bsp119I TTCGAA 1 cut(s) 644
Bsp1286I GDGCHC 3 cut(s) 424, 447, 1067
Bsp1407I TGTACA 1 cut(s) 21
Bsp143I GATC 4 cut(s) 283, 835, 912, 952
Bsp1720I GCTNAGC 1 cut(s) 75
Bsp19I CCATGG 1 cut(s) 210
BspACI CCGC 3 cut(s) 353, 867, 890
BspANI GGCC 3 cut(s) 695, 966, 1006
BspCNI CTCAG 1 cut(s) 1079
BspDI ATCGAT 1 cut(s) 884
BspFNI CGCG 1 cut(s) 948
BspLI GGNNCC 6 cut(s) 162, 179, 180, 492, 532, 744
BspPI GGATC 2 cut(s) 291, 920
BspT104I TTCGAA 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 696
BsrGI TGTACA 1 cut(s) 21
BsrI ACTGG 2 cut(s) 57, 580
BssECI CCNNGG 2 cut(s) 210, 266
BssMI GATC 4 cut(s) 283, 835, 912, 952
BssNI GRCGYC 1 cut(s) 985
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 2 cut(s) 968, 1008
Bst4CI ACNGT 3 cut(s) 254, 480, 814
Bst6I CTCTTC 3 cut(s) 405, 433, 1049
BstACI GRCGYC 1 cut(s) 985
BstAUI TGTACA 1 cut(s) 21
BstBAI YACGTR 1 cut(s) 974
BstBI TTCGAA 1 cut(s) 644
BstC8I GCNNGC 6 cut(s) 48, 69, 159, 730, 792, 1019
BstDEI CTNAG 4 cut(s) 75, 153, 349, 1066
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 2 cut(s) 201, 262
BstFNI CGCG 1 cut(s) 948
BstH2I RGCGCY 1 cut(s) 910
BstHHI GCGC 3 cut(s) 703, 909, 948
BstKTI GATC 4 cut(s) 286, 838, 915, 955
BstMAI GTCTC 2 cut(s) 154, 911
BstMBI GATC 4 cut(s) 283, 835, 912, 952
BstMWI GCNNNNNNNGC 4 cut(s) 206, 338, 945, 1027
BstNI CCWGG 2 cut(s) 968, 1008
BstPAI GACNNNNGTC 2 cut(s) 183, 528
BstSCI CCNGG 3 cut(s) 266, 966, 1006
BstSLI GKGCMC 1 cut(s) 424
BstUI CGCG 1 cut(s) 948
BstV1I GCAGC 4 cut(s) 58, 208, 388, 613
BstV2I GAAGAC 1 cut(s) 365
BstX2I RGATCY 1 cut(s) 952
BstYI RGATCY 1 cut(s) 952
Bsu15I ATCGAT 1 cut(s) 884
BsuRI GGCC 3 cut(s) 695, 966, 1006
BsuTUI ATCGAT 1 cut(s) 884
BtgI CCRYGG 1 cut(s) 210
BtsCI GGATG 2 cut(s) 201, 262
BtsIMutI CAGTG 7 cut(s) 50, 250, 485, 512, 587, 819, 831
Cac8I GCNNGC 6 cut(s) 48, 69, 159, 730, 792, 1019
CfoI GCGC 3 cut(s) 703, 909, 948
Cfr13I GGNCC 6 cut(s) 178, 491, 530, 694, 1004, 1010
ClaI ATCGAT 1 cut(s) 884
CseI GACGC 1 cut(s) 974
Csp6I GTAC 2 cut(s) 22, 975
CviAII CATG 4 cut(s) 211, 407, 704, 981
CviQI GTAC 2 cut(s) 22, 975
DdeI CTNAG 4 cut(s) 75, 153, 349, 1066
DpnI GATC 4 cut(s) 285, 837, 914, 954
DpnII GATC 4 cut(s) 283, 835, 912, 952
DriI GACNNNNNGTC 2 cut(s) 244, 984
Eam1104I CTCTTC 3 cut(s) 405, 433, 1049
Eam1105I GACNNNNNGTC 2 cut(s) 244, 984
EarI CTCTTC 3 cut(s) 405, 433, 1049
Ecl136II GAGCTC 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 210
Eco24I GRGCYC 2 cut(s) 447, 1067
Eco47I GGWCC 4 cut(s) 178, 491, 530, 1010
Eco53kI GAGCTC 1 cut(s) 445
Eco57I CTGAAG 3 cut(s) 536, 663, 1034
EcoICRI GAGCTC 1 cut(s) 445
EcoO109I RGGNCCY 2 cut(s) 178, 530
EcoRII CCWGG 2 cut(s) 966, 1006
EcoT14I CCWWGG 1 cut(s) 210
EcoT38I GRGCYC 2 cut(s) 447, 1067
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 4 cut(s) 214, 410, 707, 984
FalI AAGNNNNNCTT 2 cut(s) 812, 844
FaqI GGGAC 4 cut(s) 171, 191, 516, 587
FatI CATG 4 cut(s) 210, 406, 703, 980
Fnu4HI GCNGC 7 cut(s) 13, 72, 222, 354, 402, 627, 868
FokI GGATG 2 cut(s) 208, 249
FriOI GRGCYC 2 cut(s) 447, 1067
Fsp4HI GCNGC 7 cut(s) 13, 72, 222, 354, 402, 627, 868
FspBI CTAG 5 cut(s) 369, 468, 956, 1121, 1126
FspI TGCGCA 1 cut(s) 702
GlaI GCGC 3 cut(s) 702, 908, 947
GluI GCNGC 7 cut(s) 13, 72, 222, 354, 402, 627, 868
GsuI CTGGAG 2 cut(s) 74, 1101
HaeII RGCGCY 1 cut(s) 910
HaeIII GGCC 3 cut(s) 695, 966, 1006
HapII CCGG 1 cut(s) 268
HgaI GACGC 1 cut(s) 974
HhaI GCGC 3 cut(s) 703, 909, 948
Hin1I GRCGYC 1 cut(s) 985
Hin1II CATG 4 cut(s) 214, 410, 707, 984
Hin6I GCGC 3 cut(s) 701, 907, 946
HinP1I GCGC 3 cut(s) 701, 907, 946
HinfI GANTC 9 cut(s) 56, 81, 245, 428, 544, 710, 875, 881, 1095
HpaII CCGG 1 cut(s) 268
HphI GGTGA 3 cut(s) 290, 719, 904
Hpy166II GTNNAC 4 cut(s) 22, 610, 671, 1094
Hpy188I TCNGA 5 cut(s) 31, 88, 502, 880, 1053
Hpy188III TCNNGA 3 cut(s) 548, 845, 916
Hpy8I GTNNAC 4 cut(s) 22, 610, 671, 1094
HpyAV CCTTC 5 cut(s) 314, 687, 797, 814, 1058
HpyCH4III ACNGT 3 cut(s) 254, 480, 814
HpyCH4IV ACGT 3 cut(s) 600, 649, 973
HpyCH4V TGCA 6 cut(s) 15, 50, 341, 732, 794, 925
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 338, 945, 1027
HpyF3I CTNAG 4 cut(s) 75, 153, 349, 1066
HpySE526I ACGT 3 cut(s) 600, 649, 973
Hsp92I GRCGYC 1 cut(s) 985
Hsp92II CATG 4 cut(s) 214, 410, 707, 984
HspAI GCGC 3 cut(s) 701, 907, 946
KflI GGGWCCC 1 cut(s) 178
Kzo9I GATC 4 cut(s) 283, 835, 912, 952
LmnI GCTCC 4 cut(s) 166, 398, 572, 943
Lsp1109I GCAGC 4 cut(s) 58, 208, 388, 613
MaeI CTAG 5 cut(s) 369, 468, 956, 1121, 1126
MaeII ACGT 3 cut(s) 600, 649, 973
MaeIII GTNAC 3 cut(s) 449, 541, 715
MalI GATC 4 cut(s) 285, 837, 914, 954
MboI GATC 4 cut(s) 283, 835, 912, 952
MboII GAAGA 7 cut(s) 125, 365, 422, 450, 812, 962, 1036
MfeI CAATTG 1 cut(s) 60
MflI RGATCY 1 cut(s) 952
MhlI GDGCHC 3 cut(s) 424, 447, 1067
MluCI AATT 7 cut(s) 60, 432, 592, 639, 733, 851, 1072
MlyI GAGTC 4 cut(s) 65, 254, 538, 1089
MmeI TCCRAC 2 cut(s) 300, 720
MseI TTAA 2 cut(s) 216, 854
MspI CCGG 1 cut(s) 268
MspR9I CCNGG 3 cut(s) 268, 968, 1008
MunI CAATTG 1 cut(s) 60
MvaI CCWGG 2 cut(s) 968, 1008
MvnI CGCG 1 cut(s) 948
MwoI GCNNNNNNNGC 4 cut(s) 206, 338, 945, 1027
NciI CCSGG 1 cut(s) 268
NcoI CCATGG 1 cut(s) 210
NdeII GATC 4 cut(s) 283, 835, 912, 952
NlaIII CATG 4 cut(s) 214, 410, 707, 984
NlaIV GGNNCC 6 cut(s) 162, 179, 180, 492, 532, 744
NmuCI GTSAC 2 cut(s) 541, 715
NsbI TGCGCA 1 cut(s) 702
NspV TTCGAA 1 cut(s) 644
PfeI GAWTC 5 cut(s) 81, 428, 710, 875, 881
Pfl23II CGTACG 1 cut(s) 974
PflMI CCANNNNNTGG 2 cut(s) 586, 691
PkrI GCNGC 7 cut(s) 14, 73, 223, 355, 403, 628, 869
PleI GAGTC 4 cut(s) 64, 253, 538, 1089
PpsI GAGTC 4 cut(s) 64, 253, 538, 1089
Ppu21I YACGTR 1 cut(s) 974
PpuMI RGGWCCY 2 cut(s) 178, 530
PshAI GACNNNNGTC 2 cut(s) 183, 528
PshBI ATTAAT 1 cut(s) 854
PsiI TTATAA 1 cut(s) 597
Psp124BI GAGCTC 1 cut(s) 447
Psp5II RGGWCCY 2 cut(s) 178, 530
Psp6I CCWGG 2 cut(s) 966, 1006
PspGI CCWGG 2 cut(s) 966, 1006
PspLI CGTACG 1 cut(s) 974
PspN4I GGNNCC 6 cut(s) 162, 179, 180, 492, 532, 744
PspPI GGNCC 6 cut(s) 178, 491, 530, 694, 1004, 1010
PspPPI RGGWCCY 2 cut(s) 178, 530
PsuI RGATCY 1 cut(s) 952
RsaI GTAC 2 cut(s) 23, 976
RsaNI GTAC 2 cut(s) 22, 975
SacI GAGCTC 1 cut(s) 447
SaqAI TTAA 2 cut(s) 216, 854
SatI GCNGC 7 cut(s) 13, 72, 222, 354, 402, 627, 868
Sau3AI GATC 4 cut(s) 283, 835, 912, 952
Sau96I GGNCC 6 cut(s) 178, 491, 530, 694, 1004, 1010
SchI GAGTC 4 cut(s) 65, 254, 538, 1089
ScrFI CCNGG 3 cut(s) 268, 968, 1008
SduI GDGCHC 3 cut(s) 424, 447, 1067
SfuI TTCGAA 1 cut(s) 644
SinI GGWCC 4 cut(s) 178, 491, 530, 1010
SmlI CTYRAG 3 cut(s) 190, 546, 843
SmoI CTYRAG 3 cut(s) 190, 546, 843
Sse9I AATT 7 cut(s) 60, 432, 592, 639, 733, 851, 1072
SsiI CCGC 3 cut(s) 353, 867, 890
SspMI CTAG 5 cut(s) 369, 468, 956, 1121, 1126
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 3 cut(s) 266, 966, 1006
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 3 cut(s) 254, 480, 814
TaiI ACGT 3 cut(s) 603, 652, 976
TaqI TCGA 4 cut(s) 644, 858, 884, 915
TaqII GACCGA 1 cut(s) 1027
TasI AATT 7 cut(s) 60, 432, 592, 639, 733, 851, 1072
TatI WGTACW 1 cut(s) 21
TauI GCSGC 2 cut(s) 356, 870
TfiI GAWTC 5 cut(s) 81, 428, 710, 875, 881
Tru1I TTAA 2 cut(s) 216, 854
Tru9I TTAA 2 cut(s) 216, 854
TscAI CASTG 7 cut(s) 57, 257, 485, 519, 587, 819, 838
TseFI GTSAC 2 cut(s) 541, 715
TseI GCWGC 5 cut(s) 12, 71, 221, 401, 626
Tsp45I GTSAC 2 cut(s) 541, 715
TspDTI ATGAA 2 cut(s) 132, 423
TspGWI ACGGA 1 cut(s) 734
TspRI CASTG 7 cut(s) 57, 257, 485, 519, 587, 819, 838
Van91I CCANNNNNTGG 2 cut(s) 586, 691
VpaK11BI GGWCC 4 cut(s) 178, 491, 530, 1010
VspI ATTAAT 1 cut(s) 854
XapI RAATTY 1 cut(s) 639
XspI CTAG 5 cut(s) 369, 468, 956, 1121, 1126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.