Rmu_sc0006159.1_g000013
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006159.1
OG0005556
Physical Location & Seq
Reverse (-)
53584 .. 54889
1306 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 522 bp
atgcttcggtggcagcaggctggaacgcagggctgcaggaagggggcagcaggggctgctgtgcaaggttgcaagcacacgggcgctcgggctgcagcgaaggctcggctagctcgggctaggggctgctttgtgaatgagttttggttttctgttttgtggttagagtcaggaggagagggtcgtgcaatagggattgacttagggacaaccaactcgtgcgtggcggtgtgggagaacgatcatgttgaagtgatagtgaatgatcagggaagtaagaccactccctcttgtgttgctttcactgatacacagatcttggtaggtgatgcagcacttgatgaccagattatccgaaaccccgccaacaccatttttgatgcaaagaggttaattggcaggaggtttagtgatgcttctgttcaaactgaaatgaagctctggccattcaaggttactaaaggtcccgaggacaagcctatgattgtggttacccaggaagaaaaaaagttttgctgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

173

Amino Acids

18.86

Weight (kDa)

8.5

Isoelectric Point (pI)

25.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 63 - 171 3.9e-39 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 227, 363
AcoI YGGCCR 1 cut(s) 443
AgsI TTSAA 3 cut(s) 251, 425, 451
AjnI CCWGG 1 cut(s) 495
AluBI AGCT 2 cut(s) 113, 439
AluI AGCT 2 cut(s) 113, 439
AlwNI CAGNNNCTG 1 cut(s) 56
Ama87I CYCGRG 3 cut(s) 87, 114, 467
AoxI GGCC 1 cut(s) 443
ApeKI GCWGC 9 cut(s) 13, 33, 47, 56, 92, 95, 126, 332, 516
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 464
AsuHPI GGTGA 1 cut(s) 338
AsuNHI GCTAGC 1 cut(s) 109
AvaI CYCGRG 3 cut(s) 87, 114, 467
AvaII GGWCC 1 cut(s) 464
BalI TGGCCA 1 cut(s) 445
BauI CACGAG 1 cut(s) 217
BbvI GCAGC 9 cut(s) 20, 25, 43, 59, 79, 107, 113, 344, 503
BciT130I CCWGG 1 cut(s) 497
BclI TGATCA 1 cut(s) 265
BfaI CTAG 2 cut(s) 110, 120
BfmI CTRYAG 2 cut(s) 34, 93
BfoI RGCGCY 1 cut(s) 87
BglII AGATCT 1 cut(s) 315
BisI GCNGC 9 cut(s) 14, 34, 48, 57, 93, 96, 127, 333, 517
BlsI GCNGC 9 cut(s) 15, 35, 49, 58, 94, 97, 128, 334, 518
Bme1390I CCNGG 1 cut(s) 497
Bme18I GGWCC 1 cut(s) 464
BmeT110I CYCGRG 3 cut(s) 87, 114, 467
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 1 cut(s) 466
BmrFI CCNGG 1 cut(s) 497
BmsI GCATC 3 cut(s) 319, 370, 403
BmtI GCTAGC 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 468, 495
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
BseBI CCWGG 1 cut(s) 497
BseDI CCNNGG 2 cut(s) 468, 495
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 9 cut(s) 20, 25, 43, 59, 79, 107, 113, 344, 503
BshFI GGCC 1 cut(s) 445
BsiHKCI CYCGRG 3 cut(s) 87, 114, 467
BslFI GGGAC 2 cut(s) 220, 450
BsmFI GGGAC 2 cut(s) 220, 450
BsnI GGCC 1 cut(s) 445
BsoBI CYCGRG 3 cut(s) 87, 114, 467
Bsp143I GATC 3 cut(s) 241, 265, 315
BspACI CCGC 2 cut(s) 227, 363
BspANI GGCC 1 cut(s) 445
BspLI GGNNCC 1 cut(s) 466
BspMAI CTGCAG 2 cut(s) 38, 97
BspOI GCTAGC 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 468, 495
BssMI GATC 3 cut(s) 241, 265, 315
BssSI CACGAG 1 cut(s) 217
Bst2BI CACGAG 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 497
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 3 cut(s) 18, 74, 111
BstDEI CTNAG 1 cut(s) 202
BstEII GGTNACC 1 cut(s) 490
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 3 cut(s) 244, 268, 318
BstMBI GATC 3 cut(s) 241, 265, 315
BstMWI GCNNNNNNNGC 6 cut(s) 10, 53, 56, 92, 101, 110
BstNI CCWGG 1 cut(s) 497
BstPI GGTNACC 1 cut(s) 490
BstSCI CCNGG 1 cut(s) 495
BstSFI CTRYAG 2 cut(s) 34, 93
BstV1I GCAGC 9 cut(s) 20, 25, 43, 59, 79, 107, 113, 344, 503
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
BsuRI GGCC 1 cut(s) 445
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 3 cut(s) 18, 74, 111
CaiI CAGNNNCTG 1 cut(s) 56
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 464
CviAII CATG 1 cut(s) 245
DdeI CTNAG 1 cut(s) 202
DpnI GATC 3 cut(s) 243, 267, 317
DpnII GATC 3 cut(s) 241, 265, 315
EaeI YGGCCR 1 cut(s) 443
Eco47I GGWCC 1 cut(s) 464
Eco88I CYCGRG 3 cut(s) 87, 114, 467
Eco91I GGTNACC 1 cut(s) 490
EcoO109I RGGNCCY 1 cut(s) 464
EcoO65I GGTNACC 1 cut(s) 490
EcoRII CCWGG 1 cut(s) 495
FaeI CATG 1 cut(s) 248
FaiI YATR 2 cut(s) 246, 482
FaqI GGGAC 2 cut(s) 220, 450
FatI CATG 1 cut(s) 244
FauI CCCGC 1 cut(s) 370
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 9 cut(s) 14, 34, 48, 57, 93, 96, 127, 333, 517
Fsp4HI GCNGC 9 cut(s) 14, 34, 48, 57, 93, 96, 127, 333, 517
FspBI CTAG 2 cut(s) 110, 120
GlaI GCGC 1 cut(s) 85
GluI GCNGC 9 cut(s) 14, 34, 48, 57, 93, 96, 127, 333, 517
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 1 cut(s) 445
HhaI GCGC 1 cut(s) 86
Hin1II CATG 1 cut(s) 248
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 1 cut(s) 167
HphI GGTGA 1 cut(s) 338
Hpy188I TCNGA 1 cut(s) 356
Hpy188III TCNNGA 2 cut(s) 171, 467
HpyAV CCTTC 2 cut(s) 34, 94
HpyCH4V TGCA 7 cut(s) 36, 64, 72, 95, 188, 332, 383
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 53, 56, 92, 101, 110
HpyF3I CTNAG 1 cut(s) 202
Hsp92II CATG 1 cut(s) 248
HspAI GCGC 1 cut(s) 84
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 3 cut(s) 241, 265, 315
Lsp1109I GCAGC 9 cut(s) 20, 25, 43, 59, 79, 107, 113, 344, 503
LweI GCATC 3 cut(s) 319, 370, 403
MaeI CTAG 2 cut(s) 110, 120
MaeIII GTNAC 2 cut(s) 454, 490
MalI GATC 3 cut(s) 243, 267, 317
MboI GATC 3 cut(s) 241, 265, 315
MboII GAAGA 1 cut(s) 512
MflI RGATCY 1 cut(s) 315
MlsI TGGCCA 1 cut(s) 445
MluCI AATT 1 cut(s) 393
MluNI TGGCCA 1 cut(s) 445
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 6 cut(s) 167, 172, 298, 381, 396, 463
Mox20I TGGCCA 1 cut(s) 445
MscI TGGCCA 1 cut(s) 445
MseI TTAA 1 cut(s) 392
Msp20I TGGCCA 1 cut(s) 445
MspR9I CCNGG 1 cut(s) 497
MvaI CCWGG 1 cut(s) 497
MwoI GCNNNNNNNGC 6 cut(s) 10, 53, 56, 92, 101, 110
NdeII GATC 3 cut(s) 241, 265, 315
NheI GCTAGC 1 cut(s) 109
NlaIII CATG 1 cut(s) 248
NlaIV GGNNCC 1 cut(s) 466
NmeAIII GCCGAG 1 cut(s) 85
PkrI GCNGC 9 cut(s) 15, 35, 49, 58, 94, 97, 128, 334, 518
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PpuMI RGGWCCY 1 cut(s) 464
Psp5II RGGWCCY 1 cut(s) 464
Psp6I CCWGG 1 cut(s) 495
PspEI GGTNACC 1 cut(s) 490
PspGI CCWGG 1 cut(s) 495
PspN4I GGNNCC 1 cut(s) 466
PspPI GGNCC 1 cut(s) 464
PspPPI RGGWCCY 1 cut(s) 464
PstI CTGCAG 2 cut(s) 38, 97
PstNI CAGNNNCTG 1 cut(s) 56
PsuI RGATCY 1 cut(s) 315
SaqAI TTAA 1 cut(s) 392
SatI GCNGC 9 cut(s) 14, 34, 48, 57, 93, 96, 127, 333, 517
Sau3AI GATC 3 cut(s) 241, 265, 315
Sau96I GGNCC 1 cut(s) 464
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 497
SetI ASST 8 cut(s) 70, 115, 328, 392, 407, 441, 456, 466
SfaNI GCATC 3 cut(s) 319, 370, 403
SfcI CTRYAG 2 cut(s) 34, 93
SinI GGWCC 1 cut(s) 464
Sse9I AATT 1 cut(s) 393
SsiI CCGC 2 cut(s) 227, 363
SspMI CTAG 2 cut(s) 110, 120
StyD4I CCNGG 1 cut(s) 495
TasI AATT 1 cut(s) 393
Tru1I TTAA 1 cut(s) 392
Tru9I TTAA 1 cut(s) 392
TscAI CASTG 1 cut(s) 310
TseI GCWGC 9 cut(s) 13, 33, 47, 56, 92, 95, 126, 332, 516
TspDTI ATGAA 1 cut(s) 449
TspRI CASTG 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 464
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XspI CTAG 2 cut(s) 110, 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.