Rmu_sc0006695.1_g000080

Abnormal spindle-like microcephaly-associated protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006695.1
OG0005182
Physical Location & Seq
Reverse (-)
328609 .. 329697
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1089 bp
atgaggactactgcatttggagcgtcgaatgaagttgtaaagtgctacatcaatgagattgctccaatggcgatgcacttagttccaattattatgaataaactccaccagactcttgaaggacagaggccttcaattgatgaaagagacaagcagaatgaactacaaggccttctttgtggttgcttgcaggtcatcatacagaagcttagggtcacacagattgtccaaattaatagagctgcaaacatttgtcttgagcattgcacaggtttgagagttatcgatttgaatgttaacaagatttactctgaactattgattatgcctatgcttgtcattcctgcaattgtttctatccttgaggatcaatgttgttggaatgttggttcattaatgacagaacatgaatcagtttttcttgagaaaggaggtgaagaaaatgtgcacgaatggggttggtacaaactccggattgtagcaaatgctatagtgggagttgattacttttttcaagctgcaacaatgagagaattcagacaagaggatgcaggaaatggtattccactagtcttcgcacctaatatacaagacagtgaaaaagatggtggacttattgtaaatgatgaagatgtgagagctggtgttgttttgcatgatgatggaatgatgattgtggaagatgatattactgatggggacaaggaacctactattccattgctttggaatatgttcgtccatttgcagttgcctcttttggccaagaaaacaacattagctgatgaaacatgcaaaattcaggaaactatggatggctccattaatgctgattctcctccaatattttcaggctttcgtgatctagctttgaccatgattttgtactccttgtggttgattagagcctggcacaaaagcatgggttatttgccatttgaagactccaattatccaacaataccttggttcatttacattttccttggccttggggttactctctgttcaggacatgttgctgcaaacactgcaaatggttatgggtttcaaatgatatcttgcaaaggtgcccaaattttgatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm CH IQ

Protein Analysis

362

Amino Acids

40.55

Weight (kDa)

4.84

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_IMB1 PF25574 1 - 73 6.4e-08 Importin subunit beta-1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 181
AccB1I GGYRCC 1 cut(s) 1070
AccIII TCCGGA 1 cut(s) 471
AclWI GGATC 1 cut(s) 375
AcoI YGGCCR 1 cut(s) 762
AcsI RAATTY 3 cut(s) 533, 798, 1077
AfaI GTAC 2 cut(s) 464, 887
AflIII ACRYGT 1 cut(s) 1015
AgsI TTSAA 6 cut(s) 119, 135, 292, 515, 941, 1052
AhlI ACTAGT 1 cut(s) 568
AjnI CCWGG 1 cut(s) 908
AloI GAACNNNNNNTCC 2 cut(s) 373, 405
AluBI AGCT 6 cut(s) 208, 242, 518, 641, 782, 869
AluI AGCT 6 cut(s) 208, 242, 518, 641, 782, 869
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 1 cut(s) 141
Alw44I GTGCAC 1 cut(s) 446
AlwI GGATC 1 cut(s) 375
Aor13HI TCCGGA 1 cut(s) 471
AoxI GGCC 4 cut(s) 128, 169, 762, 988
ApaLI GTGCAC 1 cut(s) 446
ApeKI GCWGC 3 cut(s) 242, 518, 1022
ApoI RAATTY 3 cut(s) 533, 798, 1077
ArsI GACNNNNNNTTYG 2 cut(s) 865, 897
AseI ATTAAT 3 cut(s) 234, 395, 825
Asp700I GAANNNNTTC 1 cut(s) 734
AsuHPI GGTGA 1 cut(s) 446
BaeGI GKGCMC 2 cut(s) 450, 1075
BalI TGGCCA 1 cut(s) 764
BanI GGYRCC 1 cut(s) 1070
BbsI GAAGAC 2 cut(s) 565, 948
Bbv12I GWGCWC 1 cut(s) 450
BbvI GCAGC 3 cut(s) 229, 505, 1009
BccI CCATC 4 cut(s) 599, 656, 689, 809
BciT130I CCWGG 1 cut(s) 910
BcoDI GTCTC 1 cut(s) 141
BcuI ACTAGT 1 cut(s) 568
BfaI CTAG 2 cut(s) 569, 866
BfmI CTRYAG 1 cut(s) 489
BfuAI ACCTGC 1 cut(s) 181
BisI GCNGC 3 cut(s) 243, 519, 1023
BlsI GCNGC 3 cut(s) 244, 520, 1024
Bme1390I CCNGG 1 cut(s) 910
BmiI GGNNCC 3 cut(s) 708, 820, 1072
BmrFI CCNGG 1 cut(s) 910
BmsI GCATC 2 cut(s) 63, 538
BpiI GAAGAC 2 cut(s) 565, 948
Bpu10I CCTNAGC 1 cut(s) 209
BpuEI CTTGAG 3 cut(s) 278, 383, 443
Bsa29I ATCGAT 1 cut(s) 285
BsaJI CCNNGG 3 cut(s) 965, 985, 991
BsaWI WCCGGW 1 cut(s) 471
Bse3DI GCAATG 2 cut(s) 262, 719
BseAI TCCGGA 1 cut(s) 471
BseBI CCWGG 1 cut(s) 910
BseCI ATCGAT 1 cut(s) 285
BseDI CCNNGG 3 cut(s) 965, 985, 991
BseGI GGATG 2 cut(s) 553, 820
BseMI GCAATG 2 cut(s) 262, 719
BseRI GAGGAG 1 cut(s) 828
BseSI GKGCMC 2 cut(s) 450, 1075
BseXI GCAGC 3 cut(s) 229, 505, 1009
BshFI GGCC 4 cut(s) 130, 171, 764, 990
BshNI GGYRCC 1 cut(s) 1070
BshVI ATCGAT 1 cut(s) 285
BsiHKAI GWGCWC 1 cut(s) 450
BsiSI CCGG 1 cut(s) 472
BslFI GGGAC 1 cut(s) 713
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 713
BsnI GGCC 4 cut(s) 130, 171, 764, 990
Bsp1286I GDGCHC 2 cut(s) 450, 1075
Bsp13I TCCGGA 1 cut(s) 471
Bsp143I GATC 2 cut(s) 367, 862
BspANI GGCC 4 cut(s) 130, 171, 764, 990
BspDI ATCGAT 1 cut(s) 285
BspEI TCCGGA 1 cut(s) 471
BspLI GGNNCC 3 cut(s) 708, 820, 1072
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 1 cut(s) 375
BspT107I GGYRCC 1 cut(s) 1070
BsrDI GCAATG 2 cut(s) 262, 719
BssECI CCNNGG 3 cut(s) 965, 985, 991
BssMI GATC 2 cut(s) 367, 862
BssT1I CCWWGG 3 cut(s) 965, 985, 991
Bst2UI CCWGG 1 cut(s) 910
Bst4CI ACNGT 1 cut(s) 596
BstAPI GCANNNNNTGC 1 cut(s) 1031
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 2 cut(s) 79, 209
BstF5I GGATG 2 cut(s) 553, 820
BstKTI GATC 2 cut(s) 370, 865
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 2 cut(s) 367, 862
BstMWI GCNNNNNNNGC 3 cut(s) 20, 68, 1031
BstNI CCWGG 1 cut(s) 910
BstNSI RCATGY 2 cut(s) 795, 1019
BstSCI CCNGG 1 cut(s) 908
BstSFI CTRYAG 1 cut(s) 489
BstSLI GKGCMC 2 cut(s) 450, 1075
BstV1I GCAGC 3 cut(s) 229, 505, 1009
BstV2I GAAGAC 2 cut(s) 565, 948
BstXI CCANNNNNNTGG 1 cut(s) 726
Bsu15I ATCGAT 1 cut(s) 285
BsuRI GGCC 4 cut(s) 130, 171, 764, 990
BsuTUI ATCGAT 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 86
BtsCI GGATG 2 cut(s) 553, 820
BtsI GCAGTG 1 cut(s) 1029
BtsIMutI CAGTG 2 cut(s) 601, 1029
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 188
ClaI ATCGAT 1 cut(s) 285
CseI GACGC 1 cut(s) 12
Csp6I GTAC 2 cut(s) 463, 886
CviAII CATG 6 cut(s) 407, 656, 792, 877, 922, 1016
CviQI GTAC 2 cut(s) 463, 886
DdeI CTNAG 2 cut(s) 79, 209
DpnI GATC 2 cut(s) 369, 864
DpnII GATC 2 cut(s) 367, 862
EaeI YGGCCR 1 cut(s) 762
Eco130I CCWWGG 3 cut(s) 965, 985, 991
Eco147I AGGCCT 2 cut(s) 130, 171
Eco32I GATATC 1 cut(s) 1059
EcoRI GAATTC 1 cut(s) 533
EcoRII CCWGG 1 cut(s) 908
EcoRV GATATC 1 cut(s) 1059
EcoT14I CCWWGG 3 cut(s) 965, 985, 991
ErhI CCWWGG 3 cut(s) 965, 985, 991
FaeI CATG 6 cut(s) 410, 659, 795, 880, 925, 1019
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FaqI GGGAC 1 cut(s) 713
FatI CATG 6 cut(s) 406, 655, 791, 876, 921, 1015
Fnu4HI GCNGC 3 cut(s) 243, 519, 1023
FokI GGATG 2 cut(s) 560, 827
Fsp4HI GCNGC 3 cut(s) 243, 519, 1023
FspBI CTAG 2 cut(s) 569, 866
GluI GCNGC 3 cut(s) 243, 519, 1023
HaeIII GGCC 4 cut(s) 130, 171, 764, 990
HapII CCGG 1 cut(s) 472
HgaI GACGC 1 cut(s) 12
Hin1II CATG 6 cut(s) 410, 659, 795, 880, 925, 1019
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 4 cut(s) 112, 410, 833, 944
HpaI GTTAAC 1 cut(s) 298
HpaII CCGG 1 cut(s) 472
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 3 cut(s) 298, 448, 611
Hpy188I TCNGA 2 cut(s) 313, 539
Hpy188III TCNNGA 7 cut(s) 116, 257, 422, 472, 803, 860, 1011
Hpy8I GTNNAC 3 cut(s) 298, 448, 611
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 3 cut(s) 113, 141, 182
HpyCH4III ACNGT 1 cut(s) 596
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 68, 1031
HpyF3I CTNAG 2 cut(s) 79, 209
Hsp92II CATG 6 cut(s) 410, 659, 795, 880, 925, 1019
Kpn2I TCCGGA 1 cut(s) 471
KspAI GTTAAC 1 cut(s) 298
Kzo9I GATC 2 cut(s) 367, 862
LmnI GCTCC 3 cut(s) 20, 67, 824
Lsp1109I GCAGC 3 cut(s) 229, 505, 1009
LweI GCATC 2 cut(s) 63, 538
MaeI CTAG 2 cut(s) 569, 866
MaeIII GTNAC 2 cut(s) 214, 997
MalI GATC 2 cut(s) 369, 864
MboI GATC 2 cut(s) 367, 862
MboII GAAGA 5 cut(s) 449, 565, 641, 692, 953
MfeI CAATTG 2 cut(s) 135, 348
MhlI GDGCHC 2 cut(s) 450, 1075
MlsI TGGCCA 1 cut(s) 764
MluCI AATT 8 cut(s) 87, 135, 231, 348, 533, 798, 949, 1077
MluNI TGGCCA 1 cut(s) 764
MlyI GAGTC 2 cut(s) 106, 938
MmeI TCCRAC 2 cut(s) 359, 980
MnlI CCTC 6 cut(s) 120, 358, 425, 538, 765, 849
Mox20I TGGCCA 1 cut(s) 764
MroI TCCGGA 1 cut(s) 471
MroXI GAANNNNTTC 1 cut(s) 734
MscI TGGCCA 1 cut(s) 764
MseI TTAA 4 cut(s) 234, 297, 395, 825
MslI CAYNNNNRTG 1 cut(s) 660
Msp20I TGGCCA 1 cut(s) 764
MspI CCGG 1 cut(s) 472
MspR9I CCNGG 1 cut(s) 910
MunI CAATTG 2 cut(s) 135, 348
MvaI CCWGG 1 cut(s) 910
MwoI GCNNNNNNNGC 3 cut(s) 20, 68, 1031
NdeII GATC 2 cut(s) 367, 862
NlaIII CATG 6 cut(s) 410, 659, 795, 880, 925, 1019
NlaIV GGNNCC 3 cut(s) 708, 820, 1072
NmuCI GTSAC 1 cut(s) 214
NspI RCATGY 2 cut(s) 795, 1019
PceI AGGCCT 2 cut(s) 130, 171
PciI ACATGT 1 cut(s) 1015
PdmI GAANNNNTTC 1 cut(s) 734
PfeI GAWTC 2 cut(s) 410, 833
PkrI GCNGC 3 cut(s) 244, 520, 1024
PleI GAGTC 2 cut(s) 106, 938
PpsI GAGTC 2 cut(s) 106, 938
PscI ACATGT 1 cut(s) 1015
PshBI ATTAAT 3 cut(s) 234, 395, 825
Psp6I CCWGG 1 cut(s) 908
PspGI CCWGG 1 cut(s) 908
PspN4I GGNNCC 3 cut(s) 708, 820, 1072
RsaI GTAC 2 cut(s) 464, 887
RsaNI GTAC 2 cut(s) 463, 886
RseI CAYNNNNRTG 1 cut(s) 660
SaqAI TTAA 4 cut(s) 234, 297, 395, 825
SatI GCNGC 3 cut(s) 243, 519, 1023
Sau3AI GATC 2 cut(s) 367, 862
SchI GAGTC 2 cut(s) 106, 938
ScrFI CCNGG 1 cut(s) 910
SduI GDGCHC 2 cut(s) 450, 1075
SfaNI GCATC 2 cut(s) 63, 538
SfcI CTRYAG 1 cut(s) 489
SmiMI CAYNNNNRTG 1 cut(s) 660
SmlI CTYRAG 3 cut(s) 257, 362, 422
SmoI CTYRAG 3 cut(s) 257, 362, 422
SpeI ACTAGT 1 cut(s) 568
Sse9I AATT 8 cut(s) 87, 135, 231, 348, 533, 798, 949, 1077
SseBI AGGCCT 2 cut(s) 130, 171
SspI AATATT 1 cut(s) 846
SspMI CTAG 2 cut(s) 569, 866
StuI AGGCCT 2 cut(s) 130, 171
StyD4I CCNGG 1 cut(s) 908
StyI CCWWGG 3 cut(s) 965, 985, 991
TaaI ACNGT 1 cut(s) 596
TaqI TCGA 2 cut(s) 26, 285
TasI AATT 8 cut(s) 87, 135, 231, 348, 533, 798, 949, 1077
TatI WGTACW 1 cut(s) 885
TfiI GAWTC 2 cut(s) 410, 833
Tru1I TTAA 4 cut(s) 234, 297, 395, 825
Tru9I TTAA 4 cut(s) 234, 297, 395, 825
TscAI CASTG 2 cut(s) 601, 1036
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 3 cut(s) 242, 518, 1022
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 9 cut(s) 45, 110, 156, 174, 381, 423, 642, 801, 961
TspRI CASTG 2 cut(s) 601, 1036
VneI GTGCAC 1 cut(s) 446
VspI ATTAAT 3 cut(s) 234, 395, 825
XapI RAATTY 3 cut(s) 533, 798, 1077
XceI RCATGY 2 cut(s) 795, 1019
XcmI CCANNNNNNNNNTGG 1 cut(s) 963
XmnI GAANNNNTTC 1 cut(s) 734
XspI CTAG 2 cut(s) 569, 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.