Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006783.1

Orthogroup ID

OG0005928

Physical Location & Seq

Genomic Coordinates Reverse (-)

59537 .. 62386

Gene Structure 2850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgaaatactttggatattaccatgcattgacacctgatgaggttagtttgttgtgtacatttggacttggggttggggattggtgtactgaacgtgtagcattgctgagattgatattgattttggggcattttgattttcaatcaggatgcgattgtatgaggtatgttggtccgggcattgctgagattgatattgattttggggcatttggattttcaatcaggatgcgattgtatgagacgatagagatgagagtgcatatggactgccccggatgcgagagcaaggctagaaatagacatggccctgcagaaggtcacagtgaccaggtgggcaagggcaagagggttgtctttttgaagcagctttcttctggcttgcttttggtcactgggccatttaagattaatggtgttcctcttagacaggtgaaccaatcttatgttattggaacttcaaccaaggttgacagctctggtgttaacatggagaagtttgatgacaagtactttgccaaggagggtcaaaagaagaaaaagaagggagaaggcaagttctttgaagtggagaaggaggtgctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

195

Amino Acids

21.85

Weight (kDa)

8.47

Isoelectric Point (pI)

29.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e	PF01159	137 - 193	6.5e-18	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005928)

Species	Orthologous Gene IDs
malus_domestica	MD00G1186900.v1.1 MD00G1187100.v1.1 MD09G1033400.v1.1
pyrus_communis	pycom111g02660 pycom111g02690
rosa_chinensis	RchiOBHm_Chr2g0171531 RchiOBHm_Chr5g0057651
rosa_laevigata	RLG00000022023 RLG00000022024
rosa_multiflora	Rmu_sc0006783.1_g000012 Rmu_sc0018612.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236610 Rroxscaffold_3G00247350
rosa_rugosa	Rorug02G0554800 Rorug02G0554800 Rorug05G0308200
rosa_samantha	Rh2AG629400 Rh2AG635600 Rh2BG639900 Rh2BG640000 Rh2BG642300 Rh2BG642400 Rh2BG649000 Rh2CG608500 Rh2CG608600 Rh2DG650800 Rh2DG656500 Rh5DG401900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	3 cut(s)	58, 88, 512
AfiI	CCNNNNNNNGG	1 cut(s)	317
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	5 cut(s)	143, 222, 364, 462, 566
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	2 cut(s)	370, 477
AluI	AGCT	2 cut(s)	370, 477
Alw26I	GTCTC	1 cut(s)	236
AoxI	GGCC	2 cut(s)	307, 398
ApeKI	GCWGC	1 cut(s)	367
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
AseI	ATTAAT	1 cut(s)	411
AspS9I	GGNCC	3 cut(s)	173, 308, 398
AsuC2I	CCSGG	2 cut(s)	177, 276
AsuHPI	GGTGA	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	379
BciT130I	CCWGG	1 cut(s)	332
BcnI	CCSGG	2 cut(s)	177, 276
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	312
BisI	GCNGC	1 cut(s)	368
BlsI	GCNGC	1 cut(s)	369
BmcAI	AGTACT	1 cut(s)	512
Bme1390I	CCNGG	3 cut(s)	177, 276, 332
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	3 cut(s)	173, 308, 398
BmrFI	CCNGG	3 cut(s)	177, 276, 332
BmrI	ACTGGG	1 cut(s)	405
BmsI	GCATC	3 cut(s)	140, 219, 269
BmuI	ACTGGG	1 cut(s)	405
BpuMI	CCSGG	2 cut(s)	177, 276
BsaJI	CCNNGG	3 cut(s)	274, 465, 519
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
Bse1I	ACTGG	1 cut(s)	400
Bse3DI	GCAATG	2 cut(s)	101, 180
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	3 cut(s)	274, 465, 519
BseGI	GGATG	3 cut(s)	155, 234, 284
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseMI	GCAATG	2 cut(s)	101, 180
BseMII	CTCAG	2 cut(s)	98, 177
BseNI	ACTGG	1 cut(s)	400
BseXI	GCAGC	1 cut(s)	379
BshFI	GGCC	2 cut(s)	309, 400
BsiSI	CCGG	2 cut(s)	176, 276
BslI	CCNNNNNNNGG	1 cut(s)	317
BsmAI	GTCTC	1 cut(s)	236
BsmBI	CGTCTC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	309, 400
Bsp1407I	TGTACA	1 cut(s)	56
BspANI	GGCC	2 cut(s)	309, 400
BspCNI	CTCAG	2 cut(s)	99, 178
BspMAI	CTGCAG	1 cut(s)	316
BsrDI	GCAATG	2 cut(s)	101, 180
BsrGI	TGTACA	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	3 cut(s)	274, 465, 519
BssT1I	CCWWGG	2 cut(s)	465, 519
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	1 cut(s)	326
BstAUI	TGTACA	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	383
BstDEI	CTNAG	3 cut(s)	107, 186, 425
BstENI	CCTNNNNNAGG	1 cut(s)	315
BstF5I	GGATG	3 cut(s)	155, 234, 284
BstMAI	GTCTC	1 cut(s)	236
BstMWI	GCNNNNNNNGC	1 cut(s)	279
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	3 cut(s)	175, 274, 330
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	379
BsuRI	GGCC	2 cut(s)	309, 400
BtsCI	GGATG	3 cut(s)	155, 234, 284
BtsIMutI	CAGTG	2 cut(s)	331, 393
Cac8I	GCNNGC	1 cut(s)	383
Cfr13I	GGNCC	3 cut(s)	173, 308, 398
CsiI	ACCWGGT	1 cut(s)	330
Csp6I	GTAC	3 cut(s)	57, 87, 511
CviAII	CATG	3 cut(s)	23, 305, 490
CviJI	RGCY	6 cut(s)	293, 309, 370, 381, 400, 477
CviKI_1	RGCY	6 cut(s)	293, 309, 370, 381, 400, 477
CviQI	GTAC	3 cut(s)	57, 87, 511
DdeI	CTNAG	3 cut(s)	107, 186, 425
Eco130I	CCWWGG	2 cut(s)	465, 519
Eco47I	GGWCC	1 cut(s)	173
EcoNI	CCTNNNNNAGG	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	330
EcoT14I	CCWWGG	2 cut(s)	465, 519
EcoT22I	ATGCAT	1 cut(s)	28
ErhI	CCWWGG	2 cut(s)	465, 519
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	3 cut(s)	26, 308, 493
FaiI	YATR	9 cut(s)	24, 161, 168, 240, 264, 266, 306, 447, 491
FatI	CATG	3 cut(s)	22, 304, 489
FauNDI	CATATG	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	368
FokI	GGATG	3 cut(s)	162, 241, 291
Fsp4HI	GCNGC	1 cut(s)	368
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	1 cut(s)	368
HaeIII	GGCC	2 cut(s)	309, 400
HapII	CCGG	2 cut(s)	176, 276
Hin1II	CATG	3 cut(s)	26, 308, 493
HincII	GTYRAC	2 cut(s)	472, 487
HindII	GTYRAC	2 cut(s)	472, 487
HpaI	GTTAAC	1 cut(s)	487
HpaII	CCGG	2 cut(s)	176, 276
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	5 cut(s)	57, 87, 436, 472, 487
Hpy188III	TCNNGA	2 cut(s)	147, 226
Hpy8I	GTNNAC	5 cut(s)	57, 87, 436, 472, 487
HpyAV	CCTTC	4 cut(s)	311, 538, 545, 568
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	3 cut(s)	26, 262, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	279
HpyF3I	CTNAG	3 cut(s)	107, 186, 425
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	3 cut(s)	26, 308, 493
KspAI	GTTAAC	1 cut(s)	487
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	3 cut(s)	140, 219, 269
MabI	ACCWGGT	1 cut(s)	330
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	3 cut(s)	320, 326, 391
MboII	GAAGA	2 cut(s)	366, 547
MnlI	CCTC	6 cut(s)	34, 156, 342, 432, 517, 571
Mph1103I	ATGCAT	1 cut(s)	28
MseI	TTAA	4 cut(s)	405, 411, 486, 586
MspI	CCGG	2 cut(s)	176, 276
MspR9I	CCNGG	3 cut(s)	177, 276, 332
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	279
NciI	CCSGG	2 cut(s)	177, 276
NdeI	CATATG	1 cut(s)	264
NlaIII	CATG	3 cut(s)	26, 308, 493
NmuCI	GTSAC	3 cut(s)	320, 326, 391
NsiI	ATGCAT	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	369
PshBI	ATTAAT	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspPI	GGNCC	3 cut(s)	173, 308, 398
PstI	CTGCAG	1 cut(s)	316
RsaI	GTAC	3 cut(s)	58, 88, 512
RsaNI	GTAC	3 cut(s)	57, 87, 511
SaqAI	TTAA	4 cut(s)	405, 411, 486, 586
SatI	GCNGC	1 cut(s)	368
Sau96I	GGNCC	3 cut(s)	173, 308, 398
ScaI	AGTACT	1 cut(s)	512
ScrFI	CCNGG	3 cut(s)	177, 276, 332
SexAI	ACCWGGT	1 cut(s)	330
SfaNI	GCATC	3 cut(s)	140, 219, 269
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	1 cut(s)	173
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	3 cut(s)	175, 274, 330
StyI	CCWWGG	2 cut(s)	465, 519
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	1 cut(s)	97
TatI	WGTACW	3 cut(s)	56, 86, 510
Tru1I	TTAA	4 cut(s)	405, 411, 486, 586
Tru9I	TTAA	4 cut(s)	405, 411, 486, 586
TscAI	CASTG	2 cut(s)	331, 400
TseFI	GTSAC	3 cut(s)	320, 326, 391
TseI	GCWGC	1 cut(s)	367
Tsp45I	GTSAC	3 cut(s)	320, 326, 391
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	331, 400
VpaK11BI	GGWCC	1 cut(s)	173
VspI	ATTAAT	1 cut(s)	411
XagI	CCTNNNNNAGG	1 cut(s)	315
XspI	CTAG	1 cut(s)	294
ZrmI	AGTACT	1 cut(s)	512
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.