Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006889.1

Orthogroup ID

OG0004551

Physical Location & Seq

Genomic Coordinates Forward (+)

22141 .. 26800

Gene Structure 4660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2478 bp

atggcggagtcgactgagcatcagcaactggcggccattctcggtcctgagcccgccgccactttccaaaccgtaatctcccacttaatctcctccccctcctctttgcaaaccctaatctccgacctcatctcctccgagaagcggtccgaggccgagctcgtcttcaacatctgcaagcaggccgatcacgagtcgctttctctcaaactcgctcagcttctcgaggtctctcccgacgagaagacccgaaccatgtcctccattctcctccggaagcaactactcacccccgacctgtggcgaatactctctcctaacaccatatccaccctcaaacatactctattatcttgtattcaacgcgaggacaccccaacatcgatttcgaaggccatctcctacgccgtgtcggagctcgcctccgcagtgttgttcgccgaaggctggccggagctcttgccctttctgttccaatccacctcttacgatgcgccgccgaagcttcaggaatgttccttcttgattttcgctcagctctcgtacttctttaccccgtttaagaaggaattacacaccgtcttcttgtactgcttgagctcctccacaaggtcagatgaagttaagatagctgcgtttagtgctgtggtcaatttcattcggtgtttgccctactctgaagatgaggataggtttcatgacgtcttgatagaaatgatgagaacagtgatgggggaattgaacaaagggaaggagatcatggcacaggaagcgatcaagttgttcattgaattggccgggacccatccgtcattgcacagccgcaacgggcagatcatccgggctatgctgcagattgctgaagccatagatgtcttggaacaagggacgaggcacttggccattgagtttctgattactctggccgaggccggagagcgtgcaccatggataatgaggaggtgtcgggagtttgttggtctactttttcccattttaatgaggatggtttcaaatgtcaaggatgatccctcatggcatacagctgagactgatgatgacattgccttgggtgtgagtggtgattactgtgtagggcaggagtgtttgcataggcttgccattgccttgggtggcaataacattgttccaattgcgttagaacactttactgcccattttgctgcacccgagtggcccaagcatcatgcagcattgattgcccttgctcaaatcgctgagggttgctctgaggtaatgataaaagatttggagcaagtggtggcaatggttttgaactcccttgaacatccacatattcgggtaaggtggtcagctattaatgcagttggccagttgtctacttatttggccccagacctgcaagttcaatatcatcaacaggtgttttctgctctgaatgccactatatatggtttgcagaaccgtcatctactggcacatgctgcttcagcactgcaaaaattcattgagaaatgtgccagggatatcttgacaccttatttggatgaagtggtttctcaattggttgtacttttgcagagtgagatacaaatggtgcatgtagaagcattgactgctttggcattagttgttgtttcatttccggaccaattccaaaaatactatgaagatgtcatgattcccctgagagttatgttgttggatgccactaataacccggtttggtccaagcccgtggagtgtattagcctcgctggtatggctgttggaaaggagaaattcagggatgatgctaagaaagtcatggaagtgctgatgtcttttcaaggatctcaaatggagctagatgacccaactgcaagttgcatgctacagatatgcgctgacctgtgcaagtgtctaggacaagatttccttccttacatgggtgctgttatgcctcctttgcttcagtttgttcaaattaagcctgttgaaactgttacctccgcaaatgacaatagtgatatggatgaatctgatgatgaaagtatggaaacaattactcttggagataaaaggattagaatcaagactagtgtattggaggaaaaagttacagcttgcaatttgctgtgttgctatgctgatgaactgaaggaaggattctttccatggatcgatcaggttgttccaacgttagttccacttatatcttatatccatgtaaaagtgcggaagtctgctgtttcagcaatgccgaagctactgctttctgcaaagttagctatagagaaaagacaagcccaaggatgtaatgaaacctatataaagaaattgtctgaccacatccttccagctctggtggaagcatcacatcaggaaactgatagagaaatcactgcaataatattggatgcgttaaatgaatgcatacagatatctggaccacttcgagatgaagccatgtcacatgcacctagtcgaggtgataaagcagggatcactccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

825

Amino Acids

91.83

Weight (kDa)

5.18

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_IPO5	PF25780	128 - 272	3.5e-14	IPO5-like, TPR repeats
Importin_rep_4	PF18808	293 - 384	8.2e-15	Importin repeat
TOR1L1_N	PF24714	370 - 540	2.4e-06	TORTIFOLIA1 N-terminal
HEAT_EZ	PF13513	399 - 453	7.2e-07	HEAT-like repeat
TPR_IMB1	PF25574	485 - 652	3.4e-06	Importin subunit beta-1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004551)

Species	Orthologous Gene IDs
malus_domestica	MD11G1005500.v1.1
rosa_chinensis	RchiOBHm_Chr5g0054081 RchiOBHm_Chr5g0054171 RchiOBHm_Chr5g0054201 RchiOBHm_Chr5g0054251
rosa_laevigata	RLG00000034915 RLG00000034916 RLG00000034918 RLG00000034920 RLG00000034921
rosa_multiflora	Rmu_sc0000094.1_g000006 Rmu_sc0000509.1_g000025 Rmu_sc0006889.1_g000007 Rmu_sc0010082.1_g000001 Rmu_sc0023670.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026650 Rroxscaffold_1G00026670
rosa_rugosa	Rorug05G0285300
rosa_samantha	Rh5AG354200 Rh5AG354300 Rh5AG354700 Rh5AG355200 Rh5BG366000 Rh5BG366100 Rh5BG367300 Rh5CG390800 Rh5DG055000 Rh5DG380900 Rh5DG381500
rosa_wichuraiana	Rw5G033390 Rw5G033410 Rw5G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	808
AatII	GACGTC	1 cut(s)	705
Acc36I	ACCTGC	1 cut(s)	1389
AccI	GTMKAC	3 cut(s)	11, 982, 1361
AccII	CGCG	1 cut(s)	366
AccIII	TCCGGA	2 cut(s)	273, 1627
AclI	AACGTT	1 cut(s)	2162
AclWI	GGATC	4 cut(s)	1022, 1822, 2150, 2474
AcoI	YGGCCR	6 cut(s)	33, 449, 795, 900, 924, 1351
AcsI	RAATTY	2 cut(s)	1484, 1763
AcuI	CTGAAG	6 cut(s)	491, 699, 882, 1455, 1919, 2141
AcyI	GRCGYC	1 cut(s)	702
AfaI	GTAC	3 cut(s)	545, 590, 1554
AfiI	CCNNNNNNNGG	6 cut(s)	144, 300, 447, 609, 1910, 2450
AhlI	ACTAGT	1 cut(s)	2060
AjnI	CCWGG	1 cut(s)	1502
AjuI	GAANNNNNNNTTGG	2 cut(s)	370, 402
AleI	CACNNNNGTG	1 cut(s)	1192
Alw21I	GWGCWC	5 cut(s)	162, 420, 459, 602, 946
Alw26I	GTCTC	2 cut(s)	235, 1043
Alw44I	GTGCAC	1 cut(s)	942
AlwI	GGATC	4 cut(s)	1022, 1822, 2150, 2474
AlwNI	CAGNNNCTG	1 cut(s)	28
Ama87I	CYCGRG	2 cut(s)	224, 1190
Aor13HI	TCCGGA	2 cut(s)	273, 1627
ApaLI	GTGCAC	1 cut(s)	942
ApeKI	GCWGC	5 cut(s)	632, 850, 1184, 1211, 1466
ApoI	RAATTY	2 cut(s)	1484, 1763
ArsI	GACNNNNNNTTYG	2 cut(s)	1507, 1539
AseI	ATTAAT	1 cut(s)	1341
AspLEI	GCGC	2 cut(s)	496, 1868
AspS9I	GGNCC	8 cut(s)	44, 147, 801, 1197, 1372, 1630, 1710, 2411
AsuC2I	CCSGG	3 cut(s)	799, 842, 1703
AsuHPI	GGTGA	3 cut(s)	280, 1094, 2465
AsuII	TTCGAA	1 cut(s)	389
AvaI	CYCGRG	2 cut(s)	224, 1190
AvaII	GGWCC	6 cut(s)	44, 147, 801, 1630, 1710, 2411
BaeGI	GKGCMC	1 cut(s)	946
BalI	TGGCCA	2 cut(s)	902, 1353
BanII	GRGCYC	5 cut(s)	54, 162, 420, 459, 602
BauI	CACGAG	1 cut(s)	191
BbsI	GAAGAC	3 cut(s)	157, 251, 574
Bbv12I	GWGCWC	5 cut(s)	162, 420, 459, 602, 946
BbvCI	CCTCAGC	1 cut(s)	1239
BbvI	GCAGC	5 cut(s)	619, 837, 1171, 1223, 1453
BccI	CCATC	4 cut(s)	404, 724, 813, 1000
BceAI	ACGGC	1 cut(s)	392
BcgI	CGANNNNNNTGC	2 cut(s)	2215, 2249
BciT130I	CCWGG	1 cut(s)	1504
BcnI	CCSGG	3 cut(s)	799, 842, 1703
BcoDI	GTCTC	2 cut(s)	235, 1043
BcuI	ACTAGT	1 cut(s)	2060
BfaI	CTAG	4 cut(s)	1829, 1886, 2061, 2445
BfmI	CTRYAG	3 cut(s)	851, 1856, 2253
BfuAI	ACCTGC	1 cut(s)	1389
BisI	GCNGC	9 cut(s)	33, 57, 497, 633, 823, 851, 1185, 1212, 1467
BlpI	GCTNAGC	2 cut(s)	216, 534
BlsI	GCNGC	9 cut(s)	34, 58, 498, 634, 824, 852, 1186, 1213, 1468
Bme1390I	CCNGG	4 cut(s)	799, 842, 1504, 1703
Bme18I	GGWCC	6 cut(s)	44, 147, 801, 1630, 1710, 2411
BmeT110I	CYCGRG	2 cut(s)	224, 1190
BmgT120I	GGNCC	8 cut(s)	44, 147, 801, 1197, 1372, 1630, 1710, 2411
BmiI	GGNNCC	3 cut(s)	802, 803, 1374
BmrFI	CCNGG	4 cut(s)	799, 842, 1504, 1703
BmsI	GCATC	7 cut(s)	28, 481, 1213, 1678, 1765, 2345, 2371
BpiI	GAAGAC	3 cut(s)	157, 251, 574
BplI	GAGNNNNNCTC	4 cut(s)	407, 439, 1232, 1264
Bpu10I	CCTNAGC	2 cut(s)	48, 1239
Bpu1102I	GCTNAGC	2 cut(s)	216, 534
Bpu14I	TTCGAA	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	616
BpuMI	CCSGG	3 cut(s)	799, 842, 1703
Bsa29I	ATCGAT	2 cut(s)	383, 2145
BsaBI	GATNNNNATC	1 cut(s)	2051
BsaHI	GRCGYC	1 cut(s)	702
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	9 cut(s)	150, 927, 947, 1068, 1128, 1503, 1719, 2138, 2272
BsaWI	WCCGGW	2 cut(s)	273, 1627
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 116, 146
Bsc4I	CCNNNNNNNGG	6 cut(s)	144, 300, 447, 609, 1910, 2450
Bse1I	ACTGG	3 cut(s)	33, 1354, 1461
Bse3DI	GCAATG	5 cut(s)	812, 1062, 1122, 1293, 2226
Bse8I	GATNNNNATC	1 cut(s)	2051
BseAI	TCCGGA	2 cut(s)	273, 1627
BseBI	CCWGG	1 cut(s)	1504
BseCI	ATCGAT	2 cut(s)	383, 2145
BseDI	CCNNGG	9 cut(s)	150, 927, 947, 1068, 1128, 1503, 1719, 2138, 2272
BseJI	GATNNNNATC	1 cut(s)	2051
BseLI	CCNNNNNNNGG	6 cut(s)	144, 300, 447, 609, 1910, 2450
BseMI	GCAATG	5 cut(s)	812, 1062, 1122, 1293, 2226
BseMII	CTCAG	8 cut(s)	6, 39, 230, 548, 1038, 1230, 1242, 1661
BseNI	ACTGG	3 cut(s)	33, 1354, 1461
BseRI	GAGGAG	6 cut(s)	82, 91, 124, 260, 592, 973
BseSI	GKGCMC	1 cut(s)	946
BseXI	GCAGC	5 cut(s)	619, 837, 1171, 1223, 1453
BsgI	GTGCAG	1 cut(s)	1170
Bsh1236I	CGCG	1 cut(s)	366
BshVI	ATCGAT	2 cut(s)	383, 2145
BsiHKAI	GWGCWC	5 cut(s)	162, 420, 459, 602, 946
BsiHKCI	CYCGRG	2 cut(s)	224, 1190
BsiSI	CCGG	7 cut(s)	274, 452, 798, 841, 933, 1628, 1703
BslFI	GGGAC	2 cut(s)	814, 901
BslI	CCNNNNNNNGG	6 cut(s)	144, 300, 447, 609, 1910, 2450
BsmAI	GTCTC	2 cut(s)	235, 1043
BsmFI	GGGAC	2 cut(s)	814, 901
BsmI	GAATGC	2 cut(s)	1426, 2399
Bso31I	GGTCTC	1 cut(s)	235
BsoBI	CYCGRG	2 cut(s)	224, 1190
Bsp119I	TTCGAA	1 cut(s)	389
Bsp1286I	GDGCHC	6 cut(s)	54, 162, 420, 459, 602, 946
Bsp13I	TCCGGA	2 cut(s)	273, 1627
Bsp143I	GATC	9 cut(s)	187, 756, 774, 834, 1027, 1814, 2142, 2146, 2466
Bsp1720I	GCTNAGC	2 cut(s)	216, 534
Bsp19I	CCATGG	2 cut(s)	947, 2138
BspCNI	CTCAG	8 cut(s)	7, 40, 229, 547, 1039, 1231, 1243, 1662
BspDI	ATCGAT	2 cut(s)	383, 2145
BspEI	TCCGGA	2 cut(s)	273, 1627
BspFNI	CGCG	1 cut(s)	366
BspHI	TCATGA	2 cut(s)	697, 1659
BspLI	GGNNCC	3 cut(s)	802, 803, 1374
BspMAI	CTGCAG	1 cut(s)	855
BspMI	ACCTGC	1 cut(s)	1389
BspPI	GGATC	4 cut(s)	1022, 1822, 2150, 2474
BspT104I	TTCGAA	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	235
BsrDI	GCAATG	5 cut(s)	812, 1062, 1122, 1293, 2226
BsrI	ACTGG	3 cut(s)	33, 1354, 1461
BssECI	CCNNGG	9 cut(s)	150, 927, 947, 1068, 1128, 1503, 1719, 2138, 2272
BssMI	GATC	9 cut(s)	187, 756, 774, 834, 1027, 1814, 2142, 2146, 2466
BssNI	GRCGYC	1 cut(s)	702
BssSI	CACGAG	1 cut(s)	191
BssT1I	CCWWGG	5 cut(s)	947, 1068, 1128, 2138, 2272
Bst2BI	CACGAG	1 cut(s)	191
Bst2UI	CCWGG	1 cut(s)	1504
Bst4CI	ACNGT	6 cut(s)	73, 580, 727, 1091, 1448, 1966
BstACI	GRCGYC	1 cut(s)	702
BstAPI	GCANNNNNTGC	3 cut(s)	1220, 1466, 1598
BstBI	TTCGAA	1 cut(s)	389
BstC8I	GCNNGC	9 cut(s)	54, 179, 183, 420, 449, 942, 1119, 1853, 2089
BstDEI	CTNAG	9 cut(s)	15, 48, 216, 534, 1047, 1239, 1251, 1670, 1779
BstDSI	CCRYGG	3 cut(s)	947, 1719, 2138
BstENI	CCTNNNNNAGG	2 cut(s)	607, 2448
BstFNI	CGCG	1 cut(s)	366
BstHHI	GCGC	2 cut(s)	496, 1868
BstKTI	GATC	9 cut(s)	190, 759, 777, 837, 1030, 1817, 2145, 2149, 2469
BstMAI	GTCTC	2 cut(s)	235, 1043
BstMBI	GATC	9 cut(s)	187, 756, 774, 834, 1027, 1814, 2142, 2146, 2466
BstNI	CCWGG	1 cut(s)	1504
BstNSI	RCATGY	4 cut(s)	1466, 1586, 1855, 2441
BstSCI	CCNGG	4 cut(s)	797, 840, 1502, 1701
BstSFI	CTRYAG	3 cut(s)	851, 1856, 2253
BstSLI	GKGCMC	1 cut(s)	946
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	5 cut(s)	619, 837, 1171, 1223, 1453
BstV2I	GAAGAC	3 cut(s)	157, 251, 574
BstX2I	RGATCY	1 cut(s)	1814
BstXI	CCANNNNNNTGG	2 cut(s)	1129, 1720
BstYI	RGATCY	1 cut(s)	1814
Bsu15I	ATCGAT	2 cut(s)	383, 2145
BsuTUI	ATCGAT	2 cut(s)	383, 2145
BtgI	CCRYGG	3 cut(s)	947, 1719, 2138
BtsI	GCAGTG	3 cut(s)	435, 1475, 2364
BtsIMutI	CAGTG	4 cut(s)	435, 732, 1475, 2364
BveI	ACCTGC	1 cut(s)	1389
Cac8I	GCNNGC	9 cut(s)	54, 179, 183, 420, 449, 942, 1119, 1853, 2089
CaiI	CAGNNNCTG	1 cut(s)	28
CciI	TCATGA	2 cut(s)	697, 1659
CfoI	GCGC	2 cut(s)	496, 1868
Cfr13I	GGNCC	8 cut(s)	44, 147, 801, 1197, 1372, 1630, 1710, 2411
ClaI	ATCGAT	2 cut(s)	383, 2145
CpoI	CGGWCCG	1 cut(s)	147
Csp6I	GTAC	3 cut(s)	544, 589, 1553
CspI	CGGWCCG	1 cut(s)	147
CviQI	GTAC	3 cut(s)	544, 589, 1553
DdeI	CTNAG	9 cut(s)	15, 48, 216, 534, 1047, 1239, 1251, 1670, 1779
DpnI	GATC	9 cut(s)	189, 758, 776, 836, 1029, 1816, 2144, 2148, 2468
DpnII	GATC	9 cut(s)	187, 756, 774, 834, 1027, 1814, 2142, 2146, 2466
DrdI	GACNNNNNNGTC	1 cut(s)	808
DseDI	GACNNNNNNGTC	1 cut(s)	808
EaeI	YGGCCR	6 cut(s)	33, 449, 795, 900, 924, 1351
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	4 cut(s)	160, 418, 457, 600
Eco130I	CCWWGG	5 cut(s)	947, 1068, 1128, 2138, 2272
Eco24I	GRGCYC	5 cut(s)	54, 162, 420, 459, 602
Eco31I	GGTCTC	1 cut(s)	235
Eco32I	GATATC	2 cut(s)	1510, 2406
Eco47I	GGWCC	6 cut(s)	44, 147, 801, 1630, 1710, 2411
Eco53kI	GAGCTC	4 cut(s)	160, 418, 457, 600
Eco57I	CTGAAG	6 cut(s)	491, 699, 882, 1455, 1919, 2141
Eco88I	CYCGRG	2 cut(s)	224, 1190
EcoICRI	GAGCTC	4 cut(s)	160, 418, 457, 600
EcoNI	CCTNNNNNAGG	2 cut(s)	607, 2448
EcoO109I	RGGNCCY	1 cut(s)	801
EcoRII	CCWGG	1 cut(s)	1502
EcoRV	GATATC	2 cut(s)	1510, 2406
EcoT14I	CCWWGG	5 cut(s)	947, 1068, 1128, 2138, 2272
EcoT22I	ATGCAT	1 cut(s)	2399
EcoT38I	GRGCYC	5 cut(s)	54, 162, 420, 459, 602
ErhI	CCWWGG	5 cut(s)	947, 1068, 1128, 2138, 2272
FalI	AAGNNNNNCTT	2 cut(s)	1884, 1916
FaqI	GGGAC	2 cut(s)	814, 901
FauI	CCCGC	1 cut(s)	61
FblI	GTMKAC	3 cut(s)	11, 982, 1361
Fnu4HI	GCNGC	9 cut(s)	33, 57, 497, 633, 823, 851, 1185, 1212, 1467
FriOI	GRGCYC	5 cut(s)	54, 162, 420, 459, 602
Fsp4HI	GCNGC	9 cut(s)	33, 57, 497, 633, 823, 851, 1185, 1212, 1467
FspBI	CTAG	4 cut(s)	1829, 1886, 2061, 2445
GlaI	GCGC	2 cut(s)	495, 1867
GluI	GCNGC	9 cut(s)	33, 57, 497, 633, 823, 851, 1185, 1212, 1467
HapII	CCGG	7 cut(s)	274, 452, 798, 841, 933, 1628, 1703
HhaI	GCGC	2 cut(s)	496, 1868
Hin1I	GRCGYC	1 cut(s)	702
Hin6I	GCGC	2 cut(s)	494, 1866
HinP1I	GCGC	2 cut(s)	494, 1866
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	6 cut(s)	8, 194, 1663, 2000, 2052, 2130
HpaII	CCGG	7 cut(s)	274, 452, 798, 841, 933, 1628, 1703
HphI	GGTGA	3 cut(s)	280, 1094, 2465
Hpy166II	GTNNAC	4 cut(s)	12, 944, 983, 1362
Hpy8I	GTNNAC	4 cut(s)	12, 944, 983, 1362
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	9 cut(s)	385, 437, 529, 559, 745, 1910, 2116, 2120, 2327
HpyCH4III	ACNGT	6 cut(s)	73, 580, 727, 1091, 1448, 1966
HpyCH4IV	ACGT	2 cut(s)	702, 2162
HpyF3I	CTNAG	9 cut(s)	15, 48, 216, 534, 1047, 1239, 1251, 1670, 1779
HpySE526I	ACGT	2 cut(s)	702, 2162
Hsp92I	GRCGYC	1 cut(s)	702
HspAI	GCGC	2 cut(s)	494, 1866
KflI	GGGWCCC	1 cut(s)	801
Kpn2I	TCCGGA	2 cut(s)	273, 1627
Kzo9I	GATC	9 cut(s)	187, 756, 774, 834, 1027, 1814, 2142, 2146, 2466
LmnI	GCTCC	5 cut(s)	415, 454, 605, 1273, 1825
Lsp1109I	GCAGC	5 cut(s)	619, 837, 1171, 1223, 1453
LweI	GCATC	7 cut(s)	28, 481, 1213, 1678, 1765, 2345, 2371
MaeI	CTAG	4 cut(s)	1829, 1886, 2061, 2445
MaeII	ACGT	2 cut(s)	702, 2162
MaeIII	GTNAC	3 cut(s)	1966, 2080, 2433
MalI	GATC	9 cut(s)	189, 758, 776, 836, 1029, 1816, 2144, 2148, 2468
MboI	GATC	9 cut(s)	187, 756, 774, 834, 1027, 1814, 2142, 2146, 2466
MboII	GAAGA	5 cut(s)	157, 256, 574, 692, 1664
MfeI	CAATTG	2 cut(s)	1152, 1544
MflI	RGATCY	1 cut(s)	1814
MhlI	GDGCHC	6 cut(s)	54, 162, 420, 459, 602, 946
MlsI	TGGCCA	2 cut(s)	902, 1353
MluNI	TGGCCA	2 cut(s)	902, 1353
MlyI	GAGTC	2 cut(s)	17, 203
MmeI	TCCRAC	5 cut(s)	147, 393, 1665, 1732, 2183
Mox20I	TGGCCA	2 cut(s)	902, 1353
Mph1103I	ATGCAT	1 cut(s)	2399
MroI	TCCGGA	2 cut(s)	273, 1627
MscI	TGGCCA	2 cut(s)	902, 1353
MseI	TTAA	7 cut(s)	86, 561, 624, 998, 1341, 1950, 2387
MslI	CAYNNNNRTG	3 cut(s)	998, 1192, 1793
Msp20I	TGGCCA	2 cut(s)	902, 1353
MspA1I	CMGCKG	1 cut(s)	1046
MspI	CCGG	7 cut(s)	274, 452, 798, 841, 933, 1628, 1703
MspR9I	CCNGG	4 cut(s)	799, 842, 1504, 1703
MunI	CAATTG	2 cut(s)	1152, 1544
Mva1269I	GAATGC	2 cut(s)	1426, 2399
MvaI	CCWGG	1 cut(s)	1504
MvnI	CGCG	1 cut(s)	366
NciI	CCSGG	3 cut(s)	799, 842, 1703
NcoI	CCATGG	2 cut(s)	947, 2138
NdeII	GATC	9 cut(s)	187, 756, 774, 834, 1027, 1814, 2142, 2146, 2466
NlaIV	GGNNCC	3 cut(s)	802, 803, 1374
NmeAIII	GCCGAG	2 cut(s)	181, 952
NmuCI	GTSAC	1 cut(s)	2433
NsiI	ATGCAT	1 cut(s)	2399
NspI	RCATGY	4 cut(s)	1466, 1586, 1855, 2441
NspV	TTCGAA	1 cut(s)	389
OliI	CACNNNNGTG	1 cut(s)	1192
PaeI	GCATGC	1 cut(s)	1855
PaeR7I	CTCGAG	1 cut(s)	224
PagI	TCATGA	2 cut(s)	697, 1659
PctI	GAATGC	2 cut(s)	1426, 2399
PfeI	GAWTC	4 cut(s)	1663, 2000, 2052, 2130
PkrI	GCNGC	9 cut(s)	34, 58, 498, 634, 824, 852, 1186, 1213, 1468
PleI	GAGTC	2 cut(s)	16, 202
PpsI	GAGTC	2 cut(s)	16, 202
PpuMI	RGGWCCY	1 cut(s)	801
PshBI	ATTAAT	1 cut(s)	1341
Psp124BI	GAGCTC	4 cut(s)	162, 420, 459, 602
Psp1406I	AACGTT	1 cut(s)	2162
Psp5II	RGGWCCY	1 cut(s)	801
Psp6I	CCWGG	1 cut(s)	1502
PspGI	CCWGG	1 cut(s)	1502
PspN4I	GGNNCC	3 cut(s)	802, 803, 1374
PspPI	GGNCC	8 cut(s)	44, 147, 801, 1197, 1372, 1630, 1710, 2411
PspPPI	RGGWCCY	1 cut(s)	801
PstI	CTGCAG	1 cut(s)	855
PstNI	CAGNNNCTG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	1814
PvuII	CAGCTG	1 cut(s)	1046
RsaI	GTAC	3 cut(s)	545, 590, 1554
RsaNI	GTAC	3 cut(s)	544, 589, 1553
RseI	CAYNNNNRTG	3 cut(s)	998, 1192, 1793
Rsr2I	CGGWCCG	1 cut(s)	147
RsrII	CGGWCCG	1 cut(s)	147
SacI	GAGCTC	4 cut(s)	162, 420, 459, 602
SalI	GTCGAC	1 cut(s)	10
SaqAI	TTAA	7 cut(s)	86, 561, 624, 998, 1341, 1950, 2387
SatI	GCNGC	9 cut(s)	33, 57, 497, 633, 823, 851, 1185, 1212, 1467
Sau3AI	GATC	9 cut(s)	187, 756, 774, 834, 1027, 1814, 2142, 2146, 2466
Sau96I	GGNCC	8 cut(s)	44, 147, 801, 1197, 1372, 1630, 1710, 2411
SchI	GAGTC	2 cut(s)	17, 203
ScrFI	CCNGG	4 cut(s)	799, 842, 1504, 1703
SduI	GDGCHC	6 cut(s)	54, 162, 420, 459, 602, 946
SfaNI	GCATC	7 cut(s)	28, 481, 1213, 1678, 1765, 2345, 2371
SfcI	CTRYAG	3 cut(s)	851, 1856, 2253
Sfr274I	CTCGAG	1 cut(s)	224
SfuI	TTCGAA	1 cut(s)	389
SinI	GGWCC	6 cut(s)	44, 147, 801, 1630, 1710, 2411
SlaI	CTCGAG	1 cut(s)	224
SmiMI	CAYNNNNRTG	3 cut(s)	998, 1192, 1793
SmlI	CTYRAG	2 cut(s)	224, 595
SmoI	CTYRAG	2 cut(s)	224, 595
SpeI	ACTAGT	1 cut(s)	2060
SphI	GCATGC	1 cut(s)	1855
SspI	AATATT	1 cut(s)	2376
SspMI	CTAG	4 cut(s)	1829, 1886, 2061, 2445
SstI	GAGCTC	4 cut(s)	162, 420, 459, 602
StyD4I	CCNGG	4 cut(s)	797, 840, 1502, 1701
StyI	CCWWGG	5 cut(s)	947, 1068, 1128, 2138, 2272
TaaI	ACNGT	6 cut(s)	73, 580, 727, 1091, 1448, 1966
TaiI	ACGT	2 cut(s)	705, 2165
TaqI	TCGA	7 cut(s)	11, 225, 383, 389, 2145, 2419, 2449
TaqII	GACCGA	1 cut(s)	32
TatI	WGTACW	2 cut(s)	588, 1552
TauI	GCSGC	4 cut(s)	35, 59, 499, 825
TfiI	GAWTC	4 cut(s)	1663, 2000, 2052, 2130
Tru1I	TTAA	7 cut(s)	86, 561, 624, 998, 1341, 1950, 2387
Tru9I	TTAA	7 cut(s)	86, 561, 624, 998, 1341, 1950, 2387
TscAI	CASTG	4 cut(s)	435, 732, 1482, 2371
TseFI	GTSAC	1 cut(s)	2433
TseI	GCWGC	5 cut(s)	632, 850, 1184, 1211, 1466
Tsp45I	GTSAC	1 cut(s)	2433
TspGWI	ACGGA	1 cut(s)	798
TspRI	CASTG	4 cut(s)	435, 732, 1482, 2371
VneI	GTGCAC	1 cut(s)	942
VpaK11BI	GGWCC	6 cut(s)	44, 147, 801, 1630, 1710, 2411
VspI	ATTAAT	1 cut(s)	1341
XagI	CCTNNNNNAGG	2 cut(s)	607, 2448
XapI	RAATTY	2 cut(s)	1484, 1763
XceI	RCATGY	4 cut(s)	1466, 1586, 1855, 2441
XcmI	CCANNNNNNNNNTGG	1 cut(s)	874
XhoI	CTCGAG	1 cut(s)	224
XmiI	GTMKAC	3 cut(s)	11, 982, 1361
XspI	CTAG	4 cut(s)	1829, 1886, 2061, 2445
ZraI	GACGTC	1 cut(s)	703
Zsp2I	ATGCAT	1 cut(s)	2399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.