Rmu_ssc0000114.1_g000027

Ribonuclease P protein subunit p25-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000114.1
OG0004900
Physical Location & Seq
Forward (+)
146312 .. 150778
4467 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 882 bp
atggagttgaggcatagtcaattgcacggcttccgcggcgtaaaagaaaaacgaagccgtagaagagggctcttttttgtgtggagcactacttatccgtttttgaacttcacgatggatcggtaccagagagtggagaagccaagagcagagacgccaattgatgagaatgagattaggattacgagccaagggaggatgcgaaactacatcacttacgccatgactctgcttcaggacaagggttcggatgaaattgttttcaaggctatgggaagagctatcaacaagactgtgacgattgtggagctaattaagagaagaattgtcggtcttcaccagtatactacaattggatccaccgacataactgatacttgggaaccccttgaggaaggccttctaccactggaaacaacgaggcatgtgtcaatgatcgtcataacactgtcaaagaaggaagtcaacaaatctaccattgggtaccagcccccattacctgctgaactggtgaaggcatctgcagagattgattatgaaggagaggactcacctagtggtcgtggccgtggcagaggaaggggaagggggagggggaggggcaggttcagaggaaacaatggctttgtgcctgaatatgatgatggaggttatgaccgcagtgggggtgatttcaggggtaggggccgtggtagaggacgtagtttccgaggccgtggaaggggagggtacaatggggcccaggctgatgtgcagcaagatggaggatacaatgaagaagcacctcaaggcggccgtggtcgtggccgtggcaggggaggatatcgtggaaggggccgtggcggctataggtctaatgggccgatccaggcagctgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

293

Amino Acids

32.78

Weight (kDa)

10.39

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 57 - 121 1e-21 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 508, 594
Acc65I GGTACC 2 cut(s) 123, 483
AccB1I GGYRCC 2 cut(s) 123, 483
AccB7I CCANNNNNTGG 1 cut(s) 133
AccI GTMKAC 1 cut(s) 344
AccII CGCG 1 cut(s) 36
AciI CCGC 5 cut(s) 34, 36, 658, 792, 843
AclWI GGATC 4 cut(s) 126, 351, 364, 859
AcoI YGGCCR 3 cut(s) 565, 793, 805
AcuI CTGAAG 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 155
AdeI CACNNNGTG 1 cut(s) 557
AfaI GTAC 3 cut(s) 125, 485, 731
AfiI CCNNNNNNNGG 5 cut(s) 133, 664, 721, 791, 814
AgsI TTSAA 2 cut(s) 106, 265
AjnI CCWGG 2 cut(s) 741, 867
AluBI AGCT 3 cut(s) 281, 310, 875
AluI AGCT 3 cut(s) 281, 310, 875
Alw21I GWGCWC 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 4 cut(s) 126, 351, 364, 859
AoxI GGCC 9 cut(s) 397, 565, 685, 712, 738, 793, 805, 835, 860
ApaI GGGCCC 1 cut(s) 742
ApeKI GCWGC 3 cut(s) 754, 872, 875
Asp700I GAANNNNTTC 1 cut(s) 399
Asp718I GGTACC 2 cut(s) 123, 483
AspS9I GGNCC 5 cut(s) 685, 738, 739, 835, 860
AsuHPI GGTGA 4 cut(s) 329, 523, 543, 680
BaeGI GKGCMC 1 cut(s) 742
BamHI GGATCC 1 cut(s) 356
BanI GGYRCC 2 cut(s) 123, 483
BanII GRGCYC 2 cut(s) 72, 742
BarI GAAGNNNNNNTAC 2 cut(s) 387, 419
BbsI GAAGAC 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 89
BbvI GCAGC 2 cut(s) 766, 862
BccI CCATC 3 cut(s) 109, 638, 755
BceAI ACGGC 8 cut(s) 42, 43, 552, 672, 699, 780, 792, 822
BciT130I CCWGG 2 cut(s) 743, 869
BciVI GTATCC 1 cut(s) 761
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 1 cut(s) 555
BfmI CTRYAG 2 cut(s) 522, 847
BfuAI ACCTGC 2 cut(s) 508, 594
BfuI GTATCC 1 cut(s) 761
BglI GCCNNNNNGGC 1 cut(s) 843
BisI GCNGC 6 cut(s) 37, 755, 793, 844, 873, 876
BlsI GCNGC 6 cut(s) 38, 756, 794, 845, 874, 877
Bme1390I CCNGG 2 cut(s) 743, 869
BmgT120I GGNCC 5 cut(s) 685, 738, 739, 835, 860
BmiI GGNNCC 8 cut(s) 125, 358, 384, 485, 686, 739, 740, 836
BmrFI CCNGG 2 cut(s) 743, 869
BmsI GCATC 2 cut(s) 189, 527
BpiI GAAGAC 1 cut(s) 326
BpuEI CTTGAG 2 cut(s) 410, 771
BsaHI GRCGYC 1 cut(s) 155
Bsc4I CCNNNNNNNGG 5 cut(s) 133, 664, 721, 791, 814
Bse1I ACTGG 3 cut(s) 340, 414, 513
BseBI CCWGG 2 cut(s) 743, 869
BseGI GGATG 2 cut(s) 204, 256
BseLI CCNNNNNNNGG 5 cut(s) 133, 664, 721, 791, 814
BseNI ACTGG 3 cut(s) 340, 414, 513
BseSI GKGCMC 1 cut(s) 742
BseX3I CGGCCG 1 cut(s) 793
BseXI GCAGC 2 cut(s) 766, 862
BsgI GTGCAG 1 cut(s) 773
Bsh1236I CGCG 1 cut(s) 36
Bsh1285I CGRYCG 1 cut(s) 796
BshFI GGCC 9 cut(s) 399, 567, 687, 714, 740, 795, 807, 837, 862
BshNI GGYRCC 2 cut(s) 123, 483
BsiEI CGRYCG 1 cut(s) 796
BsiHKAI GWGCWC 1 cut(s) 89
BslI CCNNNNNNNGG 5 cut(s) 133, 664, 721, 791, 814
BsmAI GTCTC 1 cut(s) 146
BsmBI CGTCTC 1 cut(s) 146
BsnI GGCC 9 cut(s) 399, 567, 687, 714, 740, 795, 807, 837, 862
Bsp120I GGGCCC 1 cut(s) 738
Bsp1286I GDGCHC 3 cut(s) 72, 89, 742
Bsp143I GATC 4 cut(s) 118, 356, 435, 864
BspACI CCGC 5 cut(s) 34, 36, 658, 792, 843
BspANI GGCC 9 cut(s) 399, 567, 687, 714, 740, 795, 807, 837, 862
BspFNI CGCG 1 cut(s) 36
BspLI GGNNCC 8 cut(s) 125, 358, 384, 485, 686, 739, 740, 836
BspMAI CTGCAG 1 cut(s) 526
BspMI ACCTGC 2 cut(s) 508, 594
BspPI GGATC 4 cut(s) 126, 351, 364, 859
BspQI GCTCTTC 1 cut(s) 271
BspT107I GGYRCC 2 cut(s) 123, 483
BsrI ACTGG 3 cut(s) 340, 414, 513
BssMI GATC 4 cut(s) 118, 356, 435, 864
BssNAI GTATAC 1 cut(s) 345
BssNI GRCGYC 1 cut(s) 155
BssT1I CCWWGG 1 cut(s) 190
Bst1107I GTATAC 1 cut(s) 345
Bst2UI CCWGG 2 cut(s) 743, 869
Bst4CI ACNGT 2 cut(s) 295, 450
Bst6I CTCTTC 2 cut(s) 58, 271
BstACI GRCGYC 1 cut(s) 155
BstDSI CCRYGG 7 cut(s) 34, 568, 688, 715, 796, 808, 838
BstF5I GGATG 2 cut(s) 204, 256
BstFNI CGCG 1 cut(s) 36
BstKTI GATC 4 cut(s) 121, 359, 438, 867
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 4 cut(s) 118, 356, 435, 864
BstMCI CGRYCG 1 cut(s) 796
BstMWI GCNNNNNNNGC 2 cut(s) 36, 843
BstNI CCWGG 2 cut(s) 743, 869
BstNSI RCATGY 1 cut(s) 428
BstSCI CCNGG 2 cut(s) 741, 867
BstSFI CTRYAG 2 cut(s) 522, 847
BstSLI GKGCMC 1 cut(s) 742
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 2 cut(s) 766, 862
BstV2I GAAGAC 1 cut(s) 326
BstX2I RGATCY 1 cut(s) 356
BstYI RGATCY 1 cut(s) 356
BstZ17I GTATAC 1 cut(s) 345
BstZI CGGCCG 1 cut(s) 793
BsuI GTATCC 1 cut(s) 761
BsuRI GGCC 9 cut(s) 399, 567, 687, 714, 740, 795, 807, 837, 862
BtgI CCRYGG 7 cut(s) 34, 568, 688, 715, 796, 808, 838
BtsCI GGATG 2 cut(s) 204, 256
BtsI GCAGTG 1 cut(s) 667
BtsIMutI CAGTG 3 cut(s) 407, 446, 667
BveI ACCTGC 2 cut(s) 508, 594
Cfr13I GGNCC 5 cut(s) 685, 738, 739, 835, 860
Cfr42I CCGCGG 1 cut(s) 37
CseI GACGC 1 cut(s) 163
Csp6I GTAC 3 cut(s) 124, 484, 730
CviAII CATG 2 cut(s) 223, 425
CviQI GTAC 3 cut(s) 124, 484, 730
DpnI GATC 4 cut(s) 120, 358, 437, 866
DpnII GATC 4 cut(s) 118, 356, 435, 864
DraIII CACNNNGTG 1 cut(s) 557
EaeI YGGCCR 3 cut(s) 565, 793, 805
EagI CGGCCG 1 cut(s) 793
Eam1104I CTCTTC 2 cut(s) 58, 271
EarI CTCTTC 2 cut(s) 58, 271
EclXI CGGCCG 1 cut(s) 793
Eco130I CCWWGG 1 cut(s) 190
Eco147I AGGCCT 1 cut(s) 399
Eco24I GRGCYC 2 cut(s) 72, 742
Eco32I GATATC 1 cut(s) 824
Eco52I CGGCCG 1 cut(s) 793
Eco57I CTGAAG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 738
EcoRII CCWGG 2 cut(s) 741, 867
EcoRV GATATC 1 cut(s) 824
EcoT14I CCWWGG 1 cut(s) 190
EcoT38I GRGCYC 2 cut(s) 72, 742
ErhI CCWWGG 1 cut(s) 190
Esp3I CGTCTC 1 cut(s) 146
FaeI CATG 2 cut(s) 226, 428
FatI CATG 2 cut(s) 222, 424
FblI GTMKAC 1 cut(s) 344
Fnu4HI GCNGC 6 cut(s) 37, 755, 793, 844, 873, 876
FokI GGATG 2 cut(s) 211, 263
FriOI GRGCYC 2 cut(s) 72, 742
Fsp4HI GCNGC 6 cut(s) 37, 755, 793, 844, 873, 876
FspBI CTAG 1 cut(s) 555
GluI GCNGC 6 cut(s) 37, 755, 793, 844, 873, 876
HaeIII GGCC 9 cut(s) 399, 567, 687, 714, 740, 795, 807, 837, 862
HgaI GACGC 1 cut(s) 163
Hin1I GRCGYC 1 cut(s) 155
Hin1II CATG 2 cut(s) 226, 428
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 2 cut(s) 226, 548
HphI GGTGA 4 cut(s) 329, 523, 543, 680
Hpy166II GTNNAC 2 cut(s) 345, 466
Hpy188I TCNGA 3 cut(s) 250, 611, 710
Hpy188III TCNNGA 2 cut(s) 112, 236
Hpy8I GTNNAC 2 cut(s) 345, 466
HpyAV CCTTC 9 cut(s) 389, 410, 451, 508, 533, 573, 579, 714, 825
HpyCH4III ACNGT 2 cut(s) 295, 450
HpyCH4IV ACGT 1 cut(s) 700
HpyCH4V TGCA 3 cut(s) 25, 524, 754
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 843
HpySE526I ACGT 1 cut(s) 700
Hsp92I GRCGYC 1 cut(s) 155
Hsp92II CATG 2 cut(s) 226, 428
KpnI GGTACC 2 cut(s) 127, 487
KspI CCGCGG 1 cut(s) 37
Kzo9I GATC 4 cut(s) 118, 356, 435, 864
LguI GCTCTTC 1 cut(s) 271
LmnI GCTCC 2 cut(s) 84, 307
Lsp1109I GCAGC 2 cut(s) 766, 862
LweI GCATC 2 cut(s) 189, 527
MaeI CTAG 1 cut(s) 555
MaeII ACGT 1 cut(s) 700
MaeIII GTNAC 1 cut(s) 295
MalI GATC 4 cut(s) 120, 358, 437, 866
MboI GATC 4 cut(s) 118, 356, 435, 864
MboII GAAGA 5 cut(s) 75, 288, 326, 333, 788
MfeI CAATTG 3 cut(s) 20, 159, 351
MflI RGATCY 1 cut(s) 356
MhlI GDGCHC 3 cut(s) 72, 89, 742
MluCI AATT 6 cut(s) 20, 159, 255, 312, 324, 351
MlyI GAGTC 2 cut(s) 220, 542
MroXI GAANNNNTTC 1 cut(s) 399
MseI TTAA 1 cut(s) 315
MspA1I CMGCKG 2 cut(s) 36, 875
MspR9I CCNGG 2 cut(s) 743, 869
MunI CAATTG 3 cut(s) 20, 159, 351
MvaI CCWGG 2 cut(s) 743, 869
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 2 cut(s) 36, 843
NdeII GATC 4 cut(s) 118, 356, 435, 864
NlaIII CATG 2 cut(s) 226, 428
NlaIV GGNNCC 8 cut(s) 125, 358, 384, 485, 686, 739, 740, 836
NmuCI GTSAC 1 cut(s) 295
NspI RCATGY 1 cut(s) 428
PceI AGGCCT 1 cut(s) 399
PciSI GCTCTTC 1 cut(s) 271
PcsI WCGNNNNNNNCGW 1 cut(s) 706
PdmI GAANNNNTTC 1 cut(s) 399
PflMI CCANNNNNTGG 1 cut(s) 133
PkrI GCNGC 6 cut(s) 38, 756, 794, 845, 874, 877
PleI GAGTC 2 cut(s) 220, 542
PpsI GAGTC 2 cut(s) 220, 542
Psp6I CCWGG 2 cut(s) 741, 867
PspGI CCWGG 2 cut(s) 741, 867
PspN4I GGNNCC 8 cut(s) 125, 358, 384, 485, 686, 739, 740, 836
PspOMI GGGCCC 1 cut(s) 738
PspPI GGNCC 5 cut(s) 685, 738, 739, 835, 860
PstI CTGCAG 1 cut(s) 526
PsuI RGATCY 1 cut(s) 356
PvuII CAGCTG 1 cut(s) 875
RsaI GTAC 3 cut(s) 125, 485, 731
RsaNI GTAC 3 cut(s) 124, 484, 730
SacII CCGCGG 1 cut(s) 37
SapI GCTCTTC 1 cut(s) 271
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 6 cut(s) 37, 755, 793, 844, 873, 876
Sau3AI GATC 4 cut(s) 118, 356, 435, 864
Sau96I GGNCC 5 cut(s) 685, 738, 739, 835, 860
SchI GAGTC 2 cut(s) 220, 542
ScrFI CCNGG 2 cut(s) 743, 869
SduI GDGCHC 3 cut(s) 72, 89, 742
SfaNI GCATC 2 cut(s) 189, 527
SfcI CTRYAG 2 cut(s) 522, 847
Sfr303I CCGCGG 1 cut(s) 37
SgrBI CCGCGG 1 cut(s) 37
SmlI CTYRAG 2 cut(s) 389, 786
SmoI CTYRAG 2 cut(s) 389, 786
Sse9I AATT 6 cut(s) 20, 159, 255, 312, 324, 351
SseBI AGGCCT 1 cut(s) 399
SsiI CCGC 5 cut(s) 34, 36, 658, 792, 843
SspMI CTAG 1 cut(s) 555
StuI AGGCCT 1 cut(s) 399
StyD4I CCNGG 2 cut(s) 741, 867
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 2 cut(s) 295, 450
TaiI ACGT 1 cut(s) 703
TaqII GACCGA 1 cut(s) 320
TasI AATT 6 cut(s) 20, 159, 255, 312, 324, 351
TauI GCSGC 3 cut(s) 39, 795, 846
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 3 cut(s) 414, 453, 667
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 3 cut(s) 754, 872, 875
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 3 cut(s) 267, 552, 789
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 3 cut(s) 414, 453, 667
Van91I CCANNNNNTGG 1 cut(s) 133
XceI RCATGY 1 cut(s) 428
XmiI GTMKAC 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 399
XspI CTAG 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.