Rmu_ssc0000281.1_g000008

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000281.1
OG0003995
Physical Location & Seq
Forward (+)
27784 .. 29028
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 849 bp
atggcacattttgctcataccagcaccaccgctattcttgctttcctcaatttccttcttcttcttccacattcttactcttctatgccaaagtcagatgttgatctcttggagtttcctttgaaccttgagtacttggaagctgagttcttcctgtatggctctttgggttttggcttggacaaagttgcttcaaacttgacattgggaggtccaacaccctttggtgctaagaaagccaaattagaccctttcactagggatgtgatcaatttgcatggcaaaagttggacacttgaggagaggggatttgaactcgggacctcgtttttgtttgcagagctatttttcagtgaaaggccaccatttaatccttatgccaatagcttgaactatctccttgcatcctatttgatcccttatgctggtcttactgcttgttgcgggtcttttggctgtggaatcaggacaagatgtgtgattagaacattgctgtataagaatgctctggtgagagtgcacccatatggaataacagtggtcgagtttacaaatcggctttctgacctgaggaacaagctgggacagacaggttcgaaagatgaaggccctctggttccaaaatataaaggagctgagggaaacatcattggcaatgttcttgccggaaatgcatattcagtagcatatgacaggagtcacaggacaccggaggagatactaagaattgtatatggatcaggtgatgaacatgtccctgggggtttctatcctaaaagagctgatggtcgtattgcaaaatctcatctgcaaaatggtactggaagaaatagtactaggccatcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

282

Amino Acids

31.07

Weight (kDa)

8.78

Isoelectric Point (pI)

28.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 32 - 149 2.2e-10 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 30, 444
AclWI GGATC 2 cut(s) 409, 745
AfaI GTAC 3 cut(s) 134, 820, 835
AfiI CCNNNNNNNGG 1 cut(s) 425
AflIII ACRYGT 1 cut(s) 751
AgsI TTSAA 4 cut(s) 124, 195, 314, 391
AjnI CCWGG 1 cut(s) 757
AloI GAACNNNNNNTCC 2 cut(s) 131, 163
AluBI AGCT 6 cut(s) 143, 343, 387, 580, 635, 782
AluI AGCT 6 cut(s) 143, 343, 387, 580, 635, 782
Alw21I GWGCWC 1 cut(s) 522
Alw44I GTGCAC 1 cut(s) 518
AlwI GGATC 2 cut(s) 409, 745
Ama87I CYCGRG 1 cut(s) 317
AoxI GGCC 3 cut(s) 359, 607, 839
ApaLI GTGCAC 1 cut(s) 518
ArsI GACNNNNNNTTYG 2 cut(s) 313, 345
AspS9I GGNCC 3 cut(s) 212, 321, 608
AsuHPI GGTGA 2 cut(s) 523, 755
AsuII TTCGAA 1 cut(s) 596
AvaI CYCGRG 1 cut(s) 317
AvaII GGWCC 2 cut(s) 212, 321
AxyI CCTNAGG 1 cut(s) 569
BaeGI GKGCMC 1 cut(s) 522
BarI GAAGNNNNNNTAC 2 cut(s) 817, 849
Bbv12I GWGCWC 1 cut(s) 522
BbvCI CCTCAGC 1 cut(s) 636
BccI CCATC 1 cut(s) 779
BciT130I CCWGG 1 cut(s) 759
BclI TGATCA 1 cut(s) 267
BfaI CTAG 2 cut(s) 258, 837
BmcAI AGTACT 2 cut(s) 134, 835
Bme1390I CCNGG 1 cut(s) 759
Bme18I GGWCC 2 cut(s) 212, 321
BmeT110I CYCGRG 1 cut(s) 317
BmgT120I GGNCC 3 cut(s) 212, 321, 608
BmiI GGNNCC 2 cut(s) 322, 618
BmrFI CCNGG 1 cut(s) 759
BmsI GCATC 1 cut(s) 413
BoxI GACNNNNGTC 1 cut(s) 696
Bpu10I CCTNAGC 1 cut(s) 636
Bpu14I TTCGAA 1 cut(s) 596
BpuEI CTTGAG 2 cut(s) 149, 317
BsaBI GATNNNNATC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 757, 758
BsaWI WCCGGW 1 cut(s) 709
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse1I ACTGG 1 cut(s) 826
Bse21I CCTNAGG 1 cut(s) 569
Bse3DI GCAATG 2 cut(s) 488, 661
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 2 cut(s) 757, 758
BseGI GGATG 2 cut(s) 268, 404
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMI GCAATG 2 cut(s) 488, 661
BseMII CTCAG 3 cut(s) 135, 560, 627
BseNI ACTGG 1 cut(s) 826
BseRI GAGGAG 2 cut(s) 314, 728
BseSI GKGCMC 1 cut(s) 522
BseYI CCCAGC 1 cut(s) 580
BshFI GGCC 3 cut(s) 361, 609, 841
BsiHKAI GWGCWC 1 cut(s) 522
BsiHKCI CYCGRG 1 cut(s) 317
BsiSI CCGG 2 cut(s) 666, 710
BslFI GGGAC 3 cut(s) 334, 597, 740
BslI CCNNNNNNNGG 1 cut(s) 425
BsmFI GGGAC 3 cut(s) 334, 597, 740
BsmI GAATGC 1 cut(s) 508
BsnI GGCC 3 cut(s) 361, 609, 841
BsoBI CYCGRG 1 cut(s) 317
Bsp119I TTCGAA 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 4 cut(s) 103, 267, 414, 737
BspACI CCGC 2 cut(s) 30, 444
BspANI GGCC 3 cut(s) 361, 609, 841
BspCNI CTCAG 3 cut(s) 136, 561, 628
BspLI GGNNCC 2 cut(s) 322, 618
BspPI GGATC 2 cut(s) 409, 745
BspT104I TTCGAA 1 cut(s) 596
BsrDI GCAATG 2 cut(s) 488, 661
BsrI ACTGG 1 cut(s) 826
BssECI CCNNGG 2 cut(s) 757, 758
BssMI GATC 4 cut(s) 103, 267, 414, 737
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 1 cut(s) 538
Bst6I CTCTTC 1 cut(s) 85
BstAPI GCANNNNNTGC 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 596
BstDEI CTNAG 6 cut(s) 144, 231, 569, 636, 722, 846
BstF5I GGATG 2 cut(s) 268, 404
BstKTI GATC 4 cut(s) 106, 270, 417, 740
BstMBI GATC 4 cut(s) 103, 267, 414, 737
BstMWI GCNNNNNNNGC 4 cut(s) 11, 38, 236, 671
BstNI CCWGG 1 cut(s) 759
BstNSI RCATGY 1 cut(s) 755
BstPAI GACNNNNGTC 1 cut(s) 696
BstSCI CCNGG 1 cut(s) 757
BstSLI GKGCMC 1 cut(s) 522
Bsu36I CCTNAGG 1 cut(s) 569
BsuRI GGCC 3 cut(s) 361, 609, 841
BtsCI GGATG 2 cut(s) 268, 404
BtsIMutI CAGTG 2 cut(s) 358, 543
Cfr13I GGNCC 3 cut(s) 212, 321, 608
Csp6I GTAC 3 cut(s) 133, 819, 834
CviAII CATG 2 cut(s) 278, 752
CviQI GTAC 3 cut(s) 133, 819, 834
DdeI CTNAG 6 cut(s) 144, 231, 569, 636, 722, 846
DpnI GATC 4 cut(s) 105, 269, 416, 739
DpnII GATC 4 cut(s) 103, 267, 414, 737
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 212, 321
Eco81I CCTNAGG 1 cut(s) 569
Eco88I CYCGRG 1 cut(s) 317
EcoO109I RGGNCCY 2 cut(s) 321, 608
EcoRII CCWGG 1 cut(s) 757
EcoT22I ATGCAT 1 cut(s) 676
FaeI CATG 2 cut(s) 281, 755
FaqI GGGAC 3 cut(s) 334, 597, 740
FatI CATG 2 cut(s) 277, 751
FauI CCCGC 1 cut(s) 437
FauNDI CATATG 2 cut(s) 526, 688
FbaI TGATCA 1 cut(s) 267
FokI GGATG 2 cut(s) 275, 391
FspBI CTAG 2 cut(s) 258, 837
GsaI CCCAGC 1 cut(s) 584
HaeIII GGCC 3 cut(s) 361, 609, 841
HapII CCGG 2 cut(s) 666, 710
Hin1II CATG 2 cut(s) 281, 755
HinfI GANTC 2 cut(s) 462, 697
HpaII CCGG 2 cut(s) 666, 710
HphI GGTGA 2 cut(s) 523, 755
Hpy166II GTNNAC 2 cut(s) 520, 549
Hpy188I TCNGA 2 cut(s) 97, 565
Hpy188III TCNNGA 2 cut(s) 319, 466
Hpy8I GTNNAC 2 cut(s) 520, 549
HpyAV CCTTC 2 cut(s) 65, 599
HpyCH4III ACNGT 1 cut(s) 538
HpyCH4V TGCA 7 cut(s) 277, 338, 404, 520, 674, 797, 811
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 38, 236, 671
HpyF3I CTNAG 6 cut(s) 144, 231, 569, 636, 722, 846
Hsp92II CATG 2 cut(s) 281, 755
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 4 cut(s) 103, 267, 414, 737
LmnI GCTCC 1 cut(s) 632
LweI GCATC 1 cut(s) 413
MaeI CTAG 2 cut(s) 258, 837
MaeIII GTNAC 1 cut(s) 698
MalI GATC 4 cut(s) 105, 269, 416, 739
MboI GATC 4 cut(s) 103, 267, 414, 737
MboII GAAGA 6 cut(s) 50, 53, 56, 72, 142, 837
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 4 cut(s) 49, 242, 271, 726
MlyI GAGTC 1 cut(s) 706
MmeI TCCRAC 2 cut(s) 239, 269
MnlI CCTC 9 cut(s) 56, 203, 292, 297, 334, 564, 621, 631, 706
Mph1103I ATGCAT 1 cut(s) 676
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 1 cut(s) 525
MspI CCGG 2 cut(s) 666, 710
MspR9I CCNGG 1 cut(s) 759
Mva1269I GAATGC 1 cut(s) 508
MvaI CCWGG 1 cut(s) 759
MwoI GCNNNNNNNGC 4 cut(s) 11, 38, 236, 671
NdeI CATATG 2 cut(s) 526, 688
NdeII GATC 4 cut(s) 103, 267, 414, 737
NlaIII CATG 2 cut(s) 281, 755
NlaIV GGNNCC 2 cut(s) 322, 618
NmuCI GTSAC 1 cut(s) 698
NsiI ATGCAT 1 cut(s) 676
NspI RCATGY 1 cut(s) 755
NspV TTCGAA 1 cut(s) 596
PasI CCCWGGG 1 cut(s) 758
PciI ACATGT 1 cut(s) 751
PctI GAATGC 1 cut(s) 508
PfeI GAWTC 1 cut(s) 462
PleI GAGTC 1 cut(s) 705
PpsI GAGTC 1 cut(s) 705
PpuMI RGGWCCY 1 cut(s) 321
PscI ACATGT 1 cut(s) 751
PshAI GACNNNNGTC 1 cut(s) 696
Psp5II RGGWCCY 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 757
PspFI CCCAGC 1 cut(s) 580
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 2 cut(s) 322, 618
PspPI GGNCC 3 cut(s) 212, 321, 608
PspPPI RGGWCCY 1 cut(s) 321
PsrI GAACNNNNNNTAC 2 cut(s) 116, 148
RsaI GTAC 3 cut(s) 134, 820, 835
RsaNI GTAC 3 cut(s) 133, 819, 834
RseI CAYNNNNRTG 1 cut(s) 525
SaqAI TTAA 1 cut(s) 369
Sau3AI GATC 4 cut(s) 103, 267, 414, 737
Sau96I GGNCC 3 cut(s) 212, 321, 608
ScaI AGTACT 2 cut(s) 134, 835
SchI GAGTC 1 cut(s) 706
ScrFI CCNGG 1 cut(s) 759
SduI GDGCHC 1 cut(s) 522
SfaNI GCATC 1 cut(s) 413
SfuI TTCGAA 1 cut(s) 596
SinI GGWCC 2 cut(s) 212, 321
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 2 cut(s) 128, 296
SmoI CTYRAG 2 cut(s) 128, 296
Sse9I AATT 4 cut(s) 49, 242, 271, 726
SsiI CCGC 2 cut(s) 30, 444
SspMI CTAG 2 cut(s) 258, 837
StyD4I CCNGG 1 cut(s) 757
TaaI ACNGT 1 cut(s) 538
TaqI TCGA 2 cut(s) 543, 596
TasI AATT 4 cut(s) 49, 242, 271, 726
TatI WGTACW 2 cut(s) 132, 833
TfiI GAWTC 1 cut(s) 462
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 2 cut(s) 358, 543
TseFI GTSAC 1 cut(s) 698
Tsp45I GTSAC 1 cut(s) 698
TspDTI ATGAA 2 cut(s) 618, 762
TspRI CASTG 2 cut(s) 358, 543
VneI GTGCAC 1 cut(s) 518
VpaK11BI GGWCC 2 cut(s) 212, 321
XceI RCATGY 1 cut(s) 755
XspI CTAG 2 cut(s) 258, 837
ZrmI AGTACT 2 cut(s) 134, 835
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.