Rmu_ssc0000421.1_g000059

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000421.1
OG0008185
Physical Location & Seq
Forward (+)
231049 .. 232167
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 507 bp
atggggagggccgggacccggatccgattgatggcggcacgattctatgtgctccaatctgtgggaatggctgagatagtcgtcgtgcgtcgttttgaagatgccaatatgaaagaaagtcaggccttggtgaatgcagagcatgccggcaaggtgaccagaggtgagaagatggcggcatctgctgcgtttggcaagggtgcagcaaagtgggtgcccagatcatattggaagcccaaaaggattcgacggttcgcttttgaatatgtgagcactgattgtctaatgggtggtgctaccatgccacgtcctagacttgcccatagatggcaagggaaggaatttccaccaacaagcacgctcgatccaaaagtttatggtgatcagaccagtacaagaaccgaagaacacatcaagaataacttcaatgcactgacagtggagggggtaatatctttgattaatttcgttcgaaagatatttcatacacttgacatatccacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00591 map00591
Pfam Domains
Protein Families
Lipoxygenase PLAT

Protein Analysis

168

Amino Acids

18.95

Weight (kDa)

10.27

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipoxygenase PF00305 113 - 151 3.1e-07 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 61
AciI CCGC 2 cut(s) 35, 176
AclWI GGATC 3 cut(s) 16, 29, 359
AcsI RAATTY 1 cut(s) 341
AfaI GTAC 1 cut(s) 394
AfiI CCNNNNNNNGG 4 cut(s) 18, 31, 61, 327
AgsI TTSAA 3 cut(s) 98, 263, 427
AjiI CACGTC 1 cut(s) 308
Alw21I GWGCWC 2 cut(s) 54, 275
AlwI GGATC 3 cut(s) 16, 29, 359
AoxI GGCC 2 cut(s) 9, 123
ApeKI GCWGC 2 cut(s) 185, 203
ApoI RAATTY 1 cut(s) 341
AseI ATTAAT 1 cut(s) 462
Asp700I GAANNNNTTC 1 cut(s) 422
AspS9I GGNCC 2 cut(s) 9, 15
AsuC2I CCSGG 2 cut(s) 13, 19
AsuHPI GGTGA 4 cut(s) 142, 166, 176, 392
AsuII TTCGAA 1 cut(s) 472
AvaII GGWCC 1 cut(s) 15
BaeGI GKGCMC 1 cut(s) 219
BamHI GGATCC 1 cut(s) 21
BanI GGYRCC 1 cut(s) 214
Bbv12I GWGCWC 2 cut(s) 54, 275
BbvI GCAGC 2 cut(s) 172, 215
BccI CCATC 3 cut(s) 25, 166, 321
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 2 cut(s) 13, 19
BfaI CTAG 2 cut(s) 312, 505
BisI GCNGC 4 cut(s) 36, 177, 186, 204
BlsI GCNGC 4 cut(s) 37, 178, 187, 205
Bme1390I CCNGG 2 cut(s) 13, 19
Bme18I GGWCC 1 cut(s) 15
BmgBI CACGTC 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 9, 15
BmiI GGNNCC 4 cut(s) 16, 17, 23, 216
BmrFI CCNGG 2 cut(s) 13, 19
BmsI GCATC 2 cut(s) 91, 188
Bpu14I TTCGAA 1 cut(s) 472
BpuMI CCSGG 2 cut(s) 13, 19
BsaJI CCNNGG 1 cut(s) 126
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 31, 61, 327
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 126
BseLI CCNNNNNNNGG 4 cut(s) 18, 31, 61, 327
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 390
BseSI GKGCMC 1 cut(s) 219
BseXI GCAGC 2 cut(s) 172, 215
BsgI GTGCAG 1 cut(s) 222
BshFI GGCC 2 cut(s) 11, 125
BshNI GGYRCC 1 cut(s) 214
BsiHKAI GWGCWC 2 cut(s) 54, 275
BsiSI CCGG 3 cut(s) 12, 19, 147
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 4 cut(s) 18, 31, 61, 327
BsmFI GGGAC 1 cut(s) 28
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 2 cut(s) 11, 125
Bsp119I TTCGAA 1 cut(s) 472
Bsp1286I GDGCHC 3 cut(s) 54, 219, 275
Bsp143I GATC 4 cut(s) 21, 221, 364, 382
BspACI CCGC 2 cut(s) 35, 176
BspANI GGCC 2 cut(s) 11, 125
BspCNI CTCAG 1 cut(s) 64
BspLI GGNNCC 4 cut(s) 16, 17, 23, 216
BspPI GGATC 3 cut(s) 16, 29, 359
BspT104I TTCGAA 1 cut(s) 472
BspT107I GGYRCC 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 1 cut(s) 390
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 4 cut(s) 21, 221, 364, 382
BssT1I CCWWGG 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 252, 439
BstAPI GCANNNNNTGC 2 cut(s) 143, 185
BstBI TTCGAA 1 cut(s) 472
BstC8I GCNNGC 3 cut(s) 144, 148, 359
BstDEI CTNAG 1 cut(s) 72
BstEII GGTNACC 1 cut(s) 154
BstKTI GATC 4 cut(s) 24, 224, 367, 385
BstMBI GATC 4 cut(s) 21, 221, 364, 382
BstMWI GCNNNNNNNGC 3 cut(s) 143, 182, 185
BstNSI RCATGY 1 cut(s) 146
BstPI GGTNACC 1 cut(s) 154
BstSCI CCNGG 2 cut(s) 11, 17
BstSLI GKGCMC 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 172, 215
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
BsuRI GGCC 2 cut(s) 11, 125
BtrI CACGTC 1 cut(s) 308
BtsIMutI CAGTG 3 cut(s) 273, 431, 444
Cac8I GCNNGC 3 cut(s) 144, 148, 359
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 2 cut(s) 9, 15
CseI GACGC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 393
CviAII CATG 2 cut(s) 143, 301
CviJI RGCY 4 cut(s) 11, 71, 125, 235
CviKI_1 RGCY 4 cut(s) 11, 71, 125, 235
CviQI GTAC 1 cut(s) 393
DdeI CTNAG 1 cut(s) 72
DpnI GATC 4 cut(s) 23, 223, 366, 384
DpnII GATC 4 cut(s) 21, 221, 364, 382
Eco130I CCWWGG 1 cut(s) 126
Eco147I AGGCCT 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 15
Eco91I GGTNACC 1 cut(s) 154
EcoO109I RGGNCCY 1 cut(s) 15
EcoO65I GGTNACC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 146, 304
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FaqI GGGAC 1 cut(s) 28
FatI CATG 2 cut(s) 142, 300
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 4 cut(s) 36, 177, 186, 204
Fsp4HI GCNGC 4 cut(s) 36, 177, 186, 204
FspBI CTAG 2 cut(s) 312, 505
GluI GCNGC 4 cut(s) 36, 177, 186, 204
HaeIII GGCC 2 cut(s) 11, 125
HapII CCGG 3 cut(s) 12, 19, 147
HgaI GACGC 1 cut(s) 77
Hin1II CATG 2 cut(s) 146, 304
HinfI GANTC 2 cut(s) 42, 244
HpaII CCGG 3 cut(s) 12, 19, 147
HphI GGTGA 4 cut(s) 142, 166, 176, 392
Hpy188I TCNGA 2 cut(s) 26, 387
Hpy188III TCNNGA 1 cut(s) 415
Hpy99I CGWCG 3 cut(s) 86, 93, 252
HpyAV CCTTC 1 cut(s) 331
HpyCH4III ACNGT 2 cut(s) 252, 439
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 3 cut(s) 137, 203, 431
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 182, 185
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 1 cut(s) 307
Hsp92II CATG 2 cut(s) 146, 304
KflI GGGWCCC 1 cut(s) 15
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 4 cut(s) 21, 221, 364, 382
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 7 cut(s) 25, 32, 107, 160, 172, 232, 403
Lsp1109I GCAGC 2 cut(s) 172, 215
LweI GCATC 2 cut(s) 91, 188
MaeI CTAG 2 cut(s) 312, 505
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 1 cut(s) 154
MalI GATC 4 cut(s) 23, 223, 366, 384
MboI GATC 4 cut(s) 21, 221, 364, 382
MboII GAAGA 3 cut(s) 110, 181, 416
MflI RGATCY 1 cut(s) 21
MhlI GDGCHC 3 cut(s) 54, 219, 275
MluCI AATT 2 cut(s) 341, 463
MnlI CCTC 2 cut(s) 155, 436
MroNI GCCGGC 1 cut(s) 146
MroXI GAANNNNTTC 1 cut(s) 422
MseI TTAA 1 cut(s) 462
MspI CCGG 3 cut(s) 12, 19, 147
MspR9I CCNGG 2 cut(s) 13, 19
Mva1269I GAATGC 1 cut(s) 139
MwoI GCNNNNNNNGC 3 cut(s) 143, 182, 185
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 2 cut(s) 13, 19
NdeII GATC 4 cut(s) 21, 221, 364, 382
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 2 cut(s) 146, 304
NlaIV GGNNCC 4 cut(s) 16, 17, 23, 216
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 1 cut(s) 146
NspV TTCGAA 1 cut(s) 472
PaeI GCATGC 1 cut(s) 146
PceI AGGCCT 1 cut(s) 125
PctI GAATGC 1 cut(s) 139
PdiI GCCGGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 2 cut(s) 42, 244
PflMI CCANNNNNTGG 1 cut(s) 61
PkrI GCNGC 4 cut(s) 37, 178, 187, 205
PpuMI RGGWCCY 1 cut(s) 15
PshBI ATTAAT 1 cut(s) 462
Psp5II RGGWCCY 1 cut(s) 15
PspEI GGTNACC 1 cut(s) 154
PspN4I GGNNCC 4 cut(s) 16, 17, 23, 216
PspPI GGNCC 2 cut(s) 9, 15
PspPPI RGGWCCY 1 cut(s) 15
PsuI RGATCY 1 cut(s) 21
RsaI GTAC 1 cut(s) 394
RsaNI GTAC 1 cut(s) 393
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 4 cut(s) 36, 177, 186, 204
Sau3AI GATC 4 cut(s) 21, 221, 364, 382
Sau96I GGNCC 2 cut(s) 9, 15
ScrFI CCNGG 2 cut(s) 13, 19
SduI GDGCHC 3 cut(s) 54, 219, 275
SetI ASST 4 cut(s) 156, 166, 310, 506
SfaNI GCATC 2 cut(s) 91, 188
SfuI TTCGAA 1 cut(s) 472
SinI GGWCC 1 cut(s) 15
SphI GCATGC 1 cut(s) 146
Sse9I AATT 2 cut(s) 341, 463
SseBI AGGCCT 1 cut(s) 125
SsiI CCGC 2 cut(s) 35, 176
SspMI CTAG 2 cut(s) 312, 505
StuI AGGCCT 1 cut(s) 125
StyD4I CCNGG 2 cut(s) 11, 17
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 252, 439
TaiI ACGT 1 cut(s) 310
TaqI TCGA 3 cut(s) 247, 363, 472
TasI AATT 2 cut(s) 341, 463
TatI WGTACW 1 cut(s) 392
TauI GCSGC 2 cut(s) 38, 179
TfiI GAWTC 2 cut(s) 42, 244
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 3 cut(s) 280, 438, 444
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 185, 203
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 2 cut(s) 125, 473
TspRI CASTG 3 cut(s) 280, 438, 444
Van91I CCANNNNNTGG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 15
VspI ATTAAT 1 cut(s) 462
XapI RAATTY 1 cut(s) 341
XceI RCATGY 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 422
XspI CTAG 2 cut(s) 312, 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.