Rroxscaffold_1G00048650

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001388
Physical Location & Seq
Forward (+)
68698309 .. 68700841
2533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00048650.1

Sequence Viewer

Length: 621 bp
ATGAAAACTGTATGCGTTACTTTACTTCTTTTTGCCATAATAGTTTTCAAAGTTGGAGGCCGCTCTCTGCAACAGAGCTCATCTAATTTAGTTTCAGATGGCAATGATAATATTGTAGAAGTCACCCAAACTTCTCTTCTTGTTTTTGGAGGAACAGATTCTTCAGAGGACTGCAGTCTACTCTATGGCTTGTTTCCTTGGTCTTATACCGTTTTGGGGAAACTCTTCTTGATTGTGGGATATGTTCTTCTGTATATAATTGGAGAATATTATGTCGTTGCTGGAGGTGAGCTGATTTTTGAGGTTAATGGCTCTGTAGGAGCCAATTTGTTCCACTTCCTCAGTGCCATTCCAGATGCCATTATACTTCTAGTATCCGGGCTCACTGCCAGTACAGAAACTGCTCAAAGTAAAGTTTCCATTGGAGTAGGATTGCTGATTGGGTCAACTGTTTTATACCTTACAGCTGTGTGGGGATTATCAGTTGTGAAACATTGTCAGCGATCAAAATGGCTCGCCAGAAGACCCAGAGAACAGTCTCATCGACATTGTCTGAGGTTCATTTCCCACTATTGTCTAGCCTCAGCTACATTGGCTAAAACATTCATATTAAGCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_7 EF-hand_8 Na_Ca_ex

Protein Analysis

206

Amino Acids

22.36

Weight (kDa)

8.28

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 63
AccI GTMKAC 1 cut(s) 178
AciI CCGC 1 cut(s) 61
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 1 cut(s) 394
AfiI CCNNNNNNNGG 1 cut(s) 216
AgsI TTSAA 1 cut(s) 49
AjuI GAANNNNNNNTTGG 2 cut(s) 120, 152
AluBI AGCT 4 cut(s) 78, 292, 467, 587
AluI AGCT 4 cut(s) 78, 292, 467, 587
Alw21I GWGCWC 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 543
AlwNI CAGNNNCTG 1 cut(s) 401
AoxI GGCC 1 cut(s) 58
Asp700I GAANNNNTTC 2 cut(s) 157, 224
AsuC2I CCSGG 1 cut(s) 379
AsuHPI GGTGA 2 cut(s) 115, 299
BanII GRGCYC 2 cut(s) 80, 384
BbsI GAAGAC 1 cut(s) 529
Bbv12I GWGCWC 1 cut(s) 80
BbvCI CCTCAGC 1 cut(s) 583
BccI CCATC 1 cut(s) 92
BciVI GTATCC 1 cut(s) 385
BcnI CCSGG 1 cut(s) 379
BcoDI GTCTC 1 cut(s) 543
BfaI CTAG 2 cut(s) 371, 578
BfmI CTRYAG 2 cut(s) 172, 315
BfuI GTATCC 1 cut(s) 385
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 379
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 1 cut(s) 379
BmsI GCATC 1 cut(s) 346
BoxI GACNNNNGTC 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 529
BpmI CTGGAG 1 cut(s) 303
Bpu10I CCTNAGC 1 cut(s) 583
BpuMI CCSGG 1 cut(s) 379
BsaJI CCNNGG 1 cut(s) 197
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse1I ACTGG 1 cut(s) 390
Bse3DI GCAATG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 197
BseLI CCNNNNNNNGG 1 cut(s) 216
BseMI GCAATG 1 cut(s) 109
BseMII CTCAG 3 cut(s) 355, 545, 597
BseNI ACTGG 1 cut(s) 390
BshFI GGCC 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 80
BsiSI CCGG 1 cut(s) 378
BslI CCNNNNNNNGG 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 543
BsnI GGCC 1 cut(s) 60
Bsp1286I GDGCHC 2 cut(s) 80, 384
Bsp143I GATC 1 cut(s) 503
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 3 cut(s) 354, 546, 596
BspLI GGNNCC 1 cut(s) 322
BspMAI CTGCAG 1 cut(s) 176
BsrBI CCGCTC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 109
BsrI ACTGG 1 cut(s) 390
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 1 cut(s) 503
BssT1I CCWWGG 1 cut(s) 197
Bst4CI ACNGT 4 cut(s) 10, 211, 451, 537
Bst6I CTCTTC 2 cut(s) 141, 230
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 3 cut(s) 341, 554, 583
BstKTI GATC 1 cut(s) 506
BstMAI GTCTC 1 cut(s) 543
BstMBI GATC 1 cut(s) 503
BstMWI GCNNNNNNNGC 1 cut(s) 593
BstPAI GACNNNNGTC 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 377
BstSFI CTRYAG 2 cut(s) 172, 315
BstV2I GAAGAC 1 cut(s) 529
BsuI GTATCC 1 cut(s) 385
BsuRI GGCC 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 2 cut(s) 349, 384
Cac8I GCNNGC 1 cut(s) 516
CaiI CAGNNNCTG 1 cut(s) 401
CseI GACGC 1 cut(s) 604
Csp6I GTAC 1 cut(s) 393
CviQI GTAC 1 cut(s) 393
DdeI CTNAG 3 cut(s) 341, 554, 583
DpnI GATC 1 cut(s) 505
DpnII GATC 1 cut(s) 503
Eam1104I CTCTTC 2 cut(s) 141, 230
EarI CTCTTC 2 cut(s) 141, 230
Ecl136II GAGCTC 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 197
Eco24I GRGCYC 2 cut(s) 80, 384
Eco53kI GAGCTC 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 197
EcoT38I GRGCYC 2 cut(s) 80, 384
ErhI CCWWGG 1 cut(s) 197
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 61
FriOI GRGCYC 2 cut(s) 80, 384
Fsp4HI GCNGC 1 cut(s) 61
FspBI CTAG 2 cut(s) 371, 578
GluI GCNGC 1 cut(s) 61
GsuI CTGGAG 1 cut(s) 303
HaeIII GGCC 1 cut(s) 60
HapII CCGG 1 cut(s) 378
HgaI GACGC 1 cut(s) 604
HincII GTYRAC 1 cut(s) 447
HindII GTYRAC 1 cut(s) 447
HinfI GANTC 1 cut(s) 158
HpaII CCGG 1 cut(s) 378
HphI GGTGA 2 cut(s) 115, 299
Hpy166II GTNNAC 2 cut(s) 179, 447
Hpy188I TCNGA 4 cut(s) 97, 166, 555, 620
Hpy188III TCNNGA 2 cut(s) 229, 353
Hpy8I GTNNAC 2 cut(s) 179, 447
HpyCH4III ACNGT 4 cut(s) 10, 211, 451, 537
HpyCH4V TGCA 2 cut(s) 70, 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 593
HpyF3I CTNAG 3 cut(s) 341, 554, 583
Kzo9I GATC 1 cut(s) 503
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 6 cut(s) 267, 366, 391, 403, 532, 541
LweI GCATC 1 cut(s) 346
MaeI CTAG 2 cut(s) 371, 578
MaeIII GTNAC 2 cut(s) 16, 121
MalI GATC 1 cut(s) 505
MbiI CCGCTC 1 cut(s) 63
MboI GATC 1 cut(s) 503
MboII GAAGA 5 cut(s) 128, 153, 217, 239, 534
MhlI GDGCHC 2 cut(s) 80, 384
MluCI AATT 3 cut(s) 85, 258, 325
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 8 cut(s) 50, 143, 160, 278, 295, 350, 549, 592
MroXI GAANNNNTTC 2 cut(s) 157, 224
MseI TTAA 2 cut(s) 306, 611
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 379
MwoI GCNNNNNNNGC 1 cut(s) 593
NciI CCSGG 1 cut(s) 379
NdeII GATC 1 cut(s) 503
NlaIV GGNNCC 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 121
PdmI GAANNNNTTC 2 cut(s) 157, 224
PfeI GAWTC 1 cut(s) 158
PflFI GACNNNGTC 1 cut(s) 549
PkrI GCNGC 1 cut(s) 62
PshAI GACNNNNGTC 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 322
PstI CTGCAG 1 cut(s) 176
PstNI CAGNNNCTG 1 cut(s) 401
PsyI GACNNNGTC 1 cut(s) 549
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 1 cut(s) 394
RsaNI GTAC 1 cut(s) 393
SacI GAGCTC 1 cut(s) 80
SaqAI TTAA 2 cut(s) 306, 611
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 1 cut(s) 503
ScrFI CCNGG 1 cut(s) 379
SduI GDGCHC 2 cut(s) 80, 384
SetI ASST 8 cut(s) 80, 289, 294, 306, 462, 469, 560, 589
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 2 cut(s) 172, 315
Sse9I AATT 3 cut(s) 85, 258, 325
SsiI CCGC 1 cut(s) 61
SspI AATATT 2 cut(s) 112, 269
SspMI CTAG 2 cut(s) 371, 578
SstI GAGCTC 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 377
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 4 cut(s) 10, 211, 451, 537
TaqI TCGA 1 cut(s) 544
TasI AATT 3 cut(s) 85, 258, 325
TatI WGTACW 1 cut(s) 392
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 2 cut(s) 306, 611
Tru9I TTAA 2 cut(s) 306, 611
TscAI CASTG 2 cut(s) 349, 391
TseFI GTSAC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 3 cut(s) 17, 550, 595
TspRI CASTG 2 cut(s) 349, 391
Tth111I GACNNNGTC 1 cut(s) 549
XmiI GTMKAC 1 cut(s) 178
XmnI GAANNNNTTC 2 cut(s) 157, 224
XspI CTAG 2 cut(s) 371, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.