Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001388

Physical Location & Seq

Genomic Coordinates Reverse (-)

25382965 .. 25386495

Gene Structure 3531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG225400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGACTTCTCATCAGAGGTTCTGACTCTCACAATTGCTTGCATTGTGATTGGTGCTTTCACTGGCTTCGGAAATATTTTGGCTCTTTGGACATAGCTGGTCATAGCTACCTCATGGGAGATGCAAGAGTTCAAGAAGGGAGTAACATTCACGCAGCCCCTACTGTACCACATGCATTGTCCACAAGGAGGACTTTGGGAGATTCTTCAGAGGACTGCAGTCTACTCTATGGTTTGTTTCCATGTACTTATACCGTTTTGGGGAAACTCTTCTTGATTGTGGGATATGTTCTTCTGTATATAATTGGAGAATATTATGTCGTTGCTGGAGGTAAGCTGATTTTTGAGGTTAATGGCTCTGTAGGAGCCAATTTGTTTCACTTACTCAGTGCCATTCCAGATGCCATTATACTTCTAGGTTCTGGTGTGAGTACCAAAATTTGGACTACTTATGCTGCAAGGATTATGGTCATATCTATCATCCCAGTTGTTGTTTCTCAAATACCTCAAGTTCTCCACTTAAGTTCAGGTGGCCAACACCTTGCAATTTTAATTGCTCTCATTGTCTCCGTGATACTTACTATAGCTTATATCTTCTATGAGTTCTACTGTGAACCTTTGATACAGACAAGCCGTATCAATTATGTAGAGCACAAGCAAGCTATGTCAGGACTCTTAATATACTTAGATTCTTGTGCACAAGGAGAGCTCCTAACCAGCAATGGTGAACCTAATAAAGATGTTCTCGAAAGGTTATTGTTTAAGACCCTTGATACTGATAAAAGTGGATTTGTTTCACCTGATGAAATGAGAACACTGATTATCAAAATCCAATCAGCAGAGACTGGTTCGAGTAGGAATCATGATCAATTGGATAACATTATGAAAGAGTTTGATAGGTCTGGGGATAAATGCATTGATGTCACAGAGTTTATCGCGCACATAACAGAGTGGCTTAATAAGGCAAAGTGTCCAAAGAATGCTTTTCATGAGCCTGGTCGCCAGTCAATTAAGTACTCCTTTACGGGCATACAAAAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005432 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006816 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009506 GO:0009628 GO:0009651 GO:0009987 GO:0015075 GO:0015077 GO:0015081 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015318 GO:0015368 GO:0015491 GO:0015672 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031090 GO:0033554 GO:0034220 GO:0035725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0055065 GO:0055074 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071214 GO:0071470 GO:0071472 GO:0072507 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099516 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_7 Na_Ca_ex

Protein Analysis

347

Amino Acids

38.51

Weight (kDa)

6.22

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	249 - 314	5.2e-11	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53210
fragaria_vesca	FvH4_3g18760 FvH4_3g18770 FvH4_3g18770 FvH4_3g18770 FvH4_3g18770 FvH4_3g18800 FvH4_4g13751
malus_domestica	MD03G1238600.v1.1 MD03G1238700.v1.1 MD11G1258400.v1.1
prunus_persica	Prupe.4G171300_v2.0.a1 Prupe.4G171300_v2.0.a1 Prupe.4G171300_v2.0.a1 Prupe.4G171400_v2.0.a1
pyrus_communis	pycom03g18400 pycom03g18410 pycom05g21930 pycom11g22820
rosa_chinensis	RchiOBHm_Chr5g0031571 RchiOBHm_Chr5g0031591 RchiOBHm_Chr5g0031601 RchiOBHm_Chr5g0031631
rosa_laevigata	RLG00000033325 RLG00000033326 RLG00000033327 RLG00000033330
rosa_multiflora	Rmu_sc0001905.1_g000007 Rmu_sc0001905.1_g000015 Rmu_sc0014784.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048650 Rroxscaffold_1G00048690 Rroxscaffold_1G00048700 Rroxscaffold_1G00048730
rosa_rugosa	Rorug02G0269100 Rorug05G0127000 Rorug05G0127100
rosa_samantha	Rh5AG220400 Rh5AG220600 Rh5AG220700 Rh5BG220000 Rh5BG220100 Rh5CG243100 Rh5CG243200 Rh5CG243900 Rh5DG224800 Rh5DG225000 Rh5DG225100 Rh5DG225300 Rh5DG225400
rosa_wichuraiana	Rw5G020090 Rw5G020100 Rw5G020110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	441
AccI	GTMKAC	1 cut(s)	223
AccII	CGCG	1 cut(s)	938
AcoI	YGGCCR	1 cut(s)	532
AcsI	RAATTY	1 cut(s)	438
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	4 cut(s)	168, 247, 433, 1016
AfiI	CCNNNNNNNGG	3 cut(s)	189, 261, 441
AflII	CTTAAG	1 cut(s)	520
AgsI	TTSAA	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	994
AluBI	AGCT	6 cut(s)	98, 108, 337, 587, 662, 709
AluI	AGCT	6 cut(s)	98, 108, 337, 587, 662, 709
Alw21I	GWGCWC	3 cut(s)	654, 700, 711
Alw26I	GTCTC	2 cut(s)	571, 836
Alw44I	GTGCAC	1 cut(s)	696
AlwNI	CAGNNNCTG	1 cut(s)	845
AoxI	GGCC	1 cut(s)	532
ApaLI	GTGCAC	1 cut(s)	696
ApeKI	GCWGC	2 cut(s)	155, 455
ApoI	RAATTY	1 cut(s)	438
Asp700I	GAANNNNTTC	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	940
AsuHPI	GGTGA	2 cut(s)	737, 789
BaeGI	GKGCMC	1 cut(s)	700
BalI	TGGCCA	1 cut(s)	534
BanII	GRGCYC	1 cut(s)	711
Bbv12I	GWGCWC	3 cut(s)	654, 700, 711
BbvI	GCAGC	2 cut(s)	167, 442
BceAI	ACGGC	1 cut(s)	618
BciT130I	CCWGG	1 cut(s)	996
BclI	TGATCA	1 cut(s)	865
BcoDI	GTCTC	2 cut(s)	571, 836
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	3 cut(s)	217, 360, 582
BfrI	CTTAAG	1 cut(s)	520
BisI	GCNGC	2 cut(s)	156, 456
BlsI	GCNGC	2 cut(s)	157, 457
BmcAI	AGTACT	1 cut(s)	1016
Bme1390I	CCNGG	1 cut(s)	996
BmiI	GGNNCC	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	996
BmrI	ACTGGG	1 cut(s)	479
BmsI	GCATC	2 cut(s)	112, 391
BmuI	ACTGGG	1 cut(s)	479
BoxI	GACNNNNGTC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 261, 441
Bse1I	ACTGG	4 cut(s)	68, 485, 850, 1003
Bse3DI	GCAATG	1 cut(s)	727
BseBI	CCWGG	1 cut(s)	996
BseGI	GGATG	1 cut(s)	480
BseLI	CCNNNNNNNGG	3 cut(s)	189, 261, 441
BseMI	GCAATG	1 cut(s)	727
BseMII	CTCAG	1 cut(s)	400
BseNI	ACTGG	4 cut(s)	68, 485, 850, 1003
BseSI	GKGCMC	1 cut(s)	700
BseXI	GCAGC	2 cut(s)	167, 442
Bsh1236I	CGCG	1 cut(s)	938
BshFI	GGCC	1 cut(s)	534
BsiHKAI	GWGCWC	3 cut(s)	654, 700, 711
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	3 cut(s)	189, 261, 441
BsmAI	GTCTC	2 cut(s)	571, 836
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	985
BsnI	GGCC	1 cut(s)	534
Bsp1286I	GDGCHC	3 cut(s)	654, 700, 711
Bsp143I	GATC	1 cut(s)	865
BspANI	GGCC	1 cut(s)	534
BspCNI	CTCAG	1 cut(s)	399
BspFNI	CGCG	1 cut(s)	938
BspHI	TCATGA	2 cut(s)	862, 988
BspLI	GGNNCC	1 cut(s)	367
BspMAI	CTGCAG	1 cut(s)	221
BspTI	CTTAAG	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	727
BsrI	ACTGG	4 cut(s)	68, 485, 850, 1003
BssMI	GATC	1 cut(s)	865
Bst2UI	CCWGG	1 cut(s)	996
Bst4CI	ACNGT	3 cut(s)	166, 256, 611
Bst6I	CTCTTC	1 cut(s)	275
BstAFI	CTTAAG	1 cut(s)	520
BstC8I	GCNNGC	2 cut(s)	41, 660
BstDEI	CTNAG	2 cut(s)	386, 685
BstF5I	GGATG	1 cut(s)	480
BstFNI	CGCG	1 cut(s)	938
BstHHI	GCGC	1 cut(s)	940
BstKTI	GATC	1 cut(s)	868
BstMAI	GTCTC	2 cut(s)	571, 836
BstMBI	GATC	1 cut(s)	865
BstNI	CCWGG	1 cut(s)	996
BstNSI	RCATGY	1 cut(s)	176
BstPAI	GACNNNNGTC	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	994
BstSFI	CTRYAG	3 cut(s)	217, 360, 582
BstSLI	GKGCMC	1 cut(s)	700
BstUI	CGCG	1 cut(s)	938
BstV1I	GCAGC	2 cut(s)	167, 442
BsuRI	GGCC	1 cut(s)	534
BtsCI	GGATG	1 cut(s)	480
BtsIMutI	CAGTG	3 cut(s)	61, 394, 815
Cac8I	GCNNGC	2 cut(s)	41, 660
CaiI	CAGNNNCTG	1 cut(s)	845
CciI	TCATGA	2 cut(s)	862, 988
CfoI	GCGC	1 cut(s)	940
Csp6I	GTAC	4 cut(s)	167, 246, 432, 1015
CspCI	CAANNNNNGTGG	2 cut(s)	159, 194
CviAII	CATG	5 cut(s)	115, 173, 243, 863, 989
CviQI	GTAC	4 cut(s)	167, 246, 432, 1015
DdeI	CTNAG	2 cut(s)	386, 685
DpnI	GATC	1 cut(s)	867
DpnII	GATC	1 cut(s)	865
EaeI	YGGCCR	1 cut(s)	532
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Ecl136II	GAGCTC	1 cut(s)	709
Eco24I	GRGCYC	1 cut(s)	711
Eco53kI	GAGCTC	1 cut(s)	709
Eco57I	CTGAAG	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	709
EcoRII	CCWGG	1 cut(s)	994
EcoT22I	ATGCAT	2 cut(s)	178, 917
EcoT38I	GRGCYC	1 cut(s)	711
FaeI	CATG	5 cut(s)	118, 176, 246, 866, 992
FalI	AAGNNNNNCTT	4 cut(s)	178, 210, 1004, 1036
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	5 cut(s)	114, 172, 242, 862, 988
FbaI	TGATCA	1 cut(s)	865
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	2 cut(s)	156, 456
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	1 cut(s)	711
Fsp4HI	GCNGC	2 cut(s)	156, 456
FspBI	CTAG	1 cut(s)	416
GlaI	GCGC	1 cut(s)	939
GluI	GCNGC	2 cut(s)	156, 456
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	534
HhaI	GCGC	1 cut(s)	940
Hin1II	CATG	5 cut(s)	118, 176, 246, 866, 992
Hin6I	GCGC	1 cut(s)	938
HinP1I	GCGC	1 cut(s)	938
HinfI	GANTC	5 cut(s)	26, 203, 672, 689, 859
HphI	GGTGA	2 cut(s)	737, 789
Hpy166II	GTNNAC	5 cut(s)	183, 224, 614, 698, 728
Hpy188I	TCNGA	4 cut(s)	17, 25, 72, 211
Hpy188III	TCNNGA	7 cut(s)	134, 274, 398, 669, 746, 863, 989
Hpy8I	GTNNAC	5 cut(s)	183, 224, 614, 698, 728
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	3 cut(s)	166, 256, 611
HpyCH4V	TGCA	8 cut(s)	43, 125, 176, 219, 458, 545, 698, 915
HpyF3I	CTNAG	2 cut(s)	386, 685
Hsp92II	CATG	5 cut(s)	118, 176, 246, 866, 992
HspAI	GCGC	1 cut(s)	938
Ksp22I	TGATCA	1 cut(s)	865
Kzo9I	GATC	1 cut(s)	865
LmnI	GCTCC	2 cut(s)	365, 714
Lsp1109I	GCAGC	2 cut(s)	167, 442
LweI	GCATC	2 cut(s)	112, 391
MaeI	CTAG	1 cut(s)	416
MaeIII	GTNAC	2 cut(s)	143, 922
MalI	GATC	1 cut(s)	867
MboI	GATC	1 cut(s)	865
MboII	GAAGA	4 cut(s)	198, 262, 284, 586
MfeI	CAATTG	2 cut(s)	34, 869
MhlI	GDGCHC	3 cut(s)	654, 700, 711
MlsI	TGGCCA	1 cut(s)	534
MluCI	AATT	9 cut(s)	34, 303, 370, 438, 546, 552, 640, 869, 1008
MluNI	TGGCCA	1 cut(s)	534
MlyI	GAGTC	2 cut(s)	20, 666
MnlI	CCTC	7 cut(s)	11, 122, 183, 205, 323, 340, 516
Mox20I	TGGCCA	1 cut(s)	534
Mph1103I	ATGCAT	2 cut(s)	178, 917
MroXI	GAANNNNTTC	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	534
MseI	TTAA	7 cut(s)	351, 521, 551, 677, 762, 957, 1011
Msp20I	TGGCCA	1 cut(s)	534
MspCI	CTTAAG	1 cut(s)	520
MspR9I	CCNGG	1 cut(s)	996
MunI	CAATTG	2 cut(s)	34, 869
Mva1269I	GAATGC	1 cut(s)	985
MvaI	CCWGG	1 cut(s)	996
MvnI	CGCG	1 cut(s)	938
NdeII	GATC	1 cut(s)	865
NlaIII	CATG	5 cut(s)	118, 176, 246, 866, 992
NlaIV	GGNNCC	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	922
NsiI	ATGCAT	2 cut(s)	178, 917
NspI	RCATGY	1 cut(s)	176
PagI	TCATGA	2 cut(s)	862, 988
PctI	GAATGC	1 cut(s)	985
PdmI	GAANNNNTTC	1 cut(s)	269
PfeI	GAWTC	3 cut(s)	203, 689, 859
PflMI	CCANNNNNTGG	1 cut(s)	441
PkrI	GCNGC	2 cut(s)	157, 457
PleI	GAGTC	2 cut(s)	20, 666
PpsI	GAGTC	2 cut(s)	20, 666
PshAI	GACNNNNGTC	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	711
Psp6I	CCWGG	1 cut(s)	994
PspGI	CCWGG	1 cut(s)	994
PspN4I	GGNNCC	1 cut(s)	367
PsrI	GAACNNNNNNTAC	2 cut(s)	606, 638
PstI	CTGCAG	1 cut(s)	221
PstNI	CAGNNNCTG	1 cut(s)	845
RsaI	GTAC	4 cut(s)	168, 247, 433, 1016
RsaNI	GTAC	4 cut(s)	167, 246, 432, 1015
SacI	GAGCTC	1 cut(s)	711
SaqAI	TTAA	7 cut(s)	351, 521, 551, 677, 762, 957, 1011
SatI	GCNGC	2 cut(s)	156, 456
Sau3AI	GATC	1 cut(s)	865
ScaI	AGTACT	1 cut(s)	1016
SchI	GAGTC	2 cut(s)	20, 666
ScrFI	CCNGG	1 cut(s)	996
SduI	GDGCHC	3 cut(s)	654, 700, 711
SfaNI	GCATC	2 cut(s)	112, 391
SfcI	CTRYAG	3 cut(s)	217, 360, 582
SmlI	CTYRAG	2 cut(s)	507, 520
SmoI	CTYRAG	2 cut(s)	507, 520
Sse9I	AATT	9 cut(s)	34, 303, 370, 438, 546, 552, 640, 869, 1008
SspI	AATATT	2 cut(s)	77, 314
SspMI	CTAG	1 cut(s)	416
SstI	GAGCTC	1 cut(s)	711
StyD4I	CCNGG	1 cut(s)	994
TaaI	ACNGT	3 cut(s)	166, 256, 611
TaqI	TCGA	2 cut(s)	747, 851
TasI	AATT	9 cut(s)	34, 303, 370, 438, 546, 552, 640, 869, 1008
TatI	WGTACW	2 cut(s)	245, 1014
TfiI	GAWTC	3 cut(s)	203, 689, 859
Tru1I	TTAA	7 cut(s)	351, 521, 551, 677, 762, 957, 1011
Tru9I	TTAA	7 cut(s)	351, 521, 551, 677, 762, 957, 1011
TscAI	CASTG	3 cut(s)	68, 394, 822
TseFI	GTSAC	1 cut(s)	922
TseI	GCWGC	2 cut(s)	155, 455
Tsp45I	GTSAC	1 cut(s)	922
TspDTI	ATGAA	3 cut(s)	819, 899, 977
TspGWI	ACGGA	1 cut(s)	559
TspRI	CASTG	3 cut(s)	68, 394, 822
Van91I	CCANNNNNTGG	1 cut(s)	441
Vha464I	CTTAAG	1 cut(s)	520
VneI	GTGCAC	1 cut(s)	696
XapI	RAATTY	1 cut(s)	438
XceI	RCATGY	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	269
XspI	CTAG	1 cut(s)	416
ZrmI	AGTACT	1 cut(s)	1016
Zsp2I	ATGCAT	2 cut(s)	178, 917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.