AT1G04030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003544
Physical Location & Seq
Forward (+)
1040375 .. 1042892
2518 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04030.2

Sequence Viewer

Length: 1305 bp
ATGGGTTGCTTTTCGGGTTGCTTCGGTGGACGGAAGAATCGCCGGCGTCAGAGACGCAGAGATTCCGATGAAGCTAGAGATAACAAACTCTCTGTGGAAACTGCAGAACCTCATCATCTGAATGATAGAGTCCACATTGTTGAGGAGATCCCGAAAGCTTCTGTGATTCCAATCACTGAAATTTGTGACGAGGCTGAAGAGAAATGCAGTCCAAGCACTATTTCTAGGAAGAGAGTCACTTTTGACTCCAAAGTCAAAACCTATGAACACGTTGTTTCAGAAGAATCTGTTGAACTCTCAGAAGAGAAGAACGAAGAGGTTGAATCCGAAAAGAGGTCATTAAAGTCAAGCAAGACTGATGATCAGATCATTGAGGTTGCCTCCAACTCCTCAGGGTCGTATCCTGAAAACCACAGATACAAGAATTGCAGAGAAAGTGATGATGACATAGAGGAGGATGAGTTTGACTGCAGTGACAGCGATCTAGATGAAGATGAAGAATATTACAGTGATGTTGGATTTAGTGAGGATAGCTTGCATAACCCAACCAAGGAAGTTTATACTCAAGATATTGGGGATAAAACAGAGGAGATTGATTCAAAGCTGAGAAGGTCTAACGAGACTGTTAGAGATGGAAACCACTATGATGGCCAAGGAGTACTTAACCCTGTTGAGAATCTTACTCAGTGGAAATCCGCTAAATCCAAAGGGAGAACAAAGCAGAAACAGTCTCAAAAGGAGAACTCTAACTTCATCGCAGATCAAGAAGAAAAAAGGGATTCCTCTTCTTTCGGTACAGACCCTCAGATTGATGATATAACACTCAGCGTCAAACCGAAATGCAGAATTGAACCCAAGAAACTGCGAAACCAAGAACTGGCCGTTGATGCTAGCCTTTCAACATGGTTATCAACATCTGAGTCTGGTAGTGAATGCAACAGCGCCTCTATGTATACCTTAACACCCGAGAAACTCAAGTCTACCAGCTGCTACTCAAAACCGCTTAGAATCAATCATGACGATAGACCTGTATTATGCGCATTGACATTGGAGGATATCAAACAGTTCTCGGCTACATCTACGCCAAGGAAATCACCGAGCAAAAGCCCTGATGAGACACCTATTATAGGCACAGTTGGTGGTTACTGGGGTAATCGCTCAAAGGCAATAGATTGCGGCTCTGCATCTTCATTCAAGGGAATACCAAACACCAGTAGCAAGTACAGAGAGGATAAGAGCGTAAATTGGCATTCAACACCATTTGAGGCAAGACTGGAGAAAGCTTTGAACAACATAGACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

434

Amino Acids

49.02

Weight (kDa)

5.12

Isoelectric Point (pI)

60.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
Acc16I TGCGCA 1 cut(s) 1039
AccB7I CCANNNNNTGG 1 cut(s) 877
AccI GTMKAC 2 cut(s) 953, 980
AciI CCGC 3 cut(s) 696, 1001, 1176
AclWI GGATC 1 cut(s) 142
AcoI YGGCCR 2 cut(s) 649, 879
AcsI RAATTY 1 cut(s) 180
AcuI CTGAAG 1 cut(s) 216
AcyI GRCGYC 1 cut(s) 46
AfaI GTAC 3 cut(s) 660, 796, 1223
AfiI CCNNNNNNNGG 4 cut(s) 333, 550, 877, 1127
AflIII ACRYGT 1 cut(s) 268
AgsI TTSAA 8 cut(s) 293, 323, 600, 851, 900, 1195, 1254, 1288
AjuI GAANNNNNNNTTGG 2 cut(s) 205, 237
AluBI AGCT 6 cut(s) 74, 158, 534, 604, 987, 1283
AluI AGCT 6 cut(s) 74, 158, 534, 604, 987, 1283
Alw26I GTCTC 4 cut(s) 46, 614, 735, 1109
AlwI GGATC 1 cut(s) 142
Ama87I CYCGRG 1 cut(s) 965
AoxI GGCC 2 cut(s) 649, 879
ApeKI GCWGC 1 cut(s) 987
ApoI RAATTY 1 cut(s) 180
AspLEI GCGC 2 cut(s) 944, 1040
AsuHPI GGTGA 1 cut(s) 1086
AsuNHI GCTAGC 1 cut(s) 890
AvaI CYCGRG 1 cut(s) 965
AxyI CCTNAGG 1 cut(s) 391
BalI TGGCCA 1 cut(s) 651
BbvI GCAGC 1 cut(s) 974
BccI CCATC 2 cut(s) 626, 641
BceAI ACGGC 1 cut(s) 866
BciVI GTATCC 1 cut(s) 411
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 4 cut(s) 46, 614, 735, 1109
BfaI CTAG 4 cut(s) 75, 225, 485, 891
BfmI CTRYAG 2 cut(s) 102, 469
BfoI RGCGCY 1 cut(s) 945
BfuI GTATCC 1 cut(s) 411
BisI GCNGC 2 cut(s) 988, 1177
BlsI GCNGC 2 cut(s) 989, 1178
BmcAI AGTACT 1 cut(s) 660
BmeT110I CYCGRG 1 cut(s) 965
BmrI ACTGGG 1 cut(s) 1156
BmsI GCATC 2 cut(s) 877, 1193
BmtI GCTAGC 1 cut(s) 894
BmuI ACTGGG 1 cut(s) 1156
BplI GAGNNNNNCTC 2 cut(s) 365, 397
BpmI CTGGAG 1 cut(s) 1295
BpuEI CTTGAG 2 cut(s) 549, 959
BsaBI GATNNNNATC 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 46
BsaJI CCNNGG 3 cut(s) 549, 652, 1085
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 4 cut(s) 333, 550, 877, 1127
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 4 cut(s) 882, 1151, 1212, 1278
Bse21I CCTNAGG 1 cut(s) 391
Bse8I GATNNNNATC 1 cut(s) 170
BseDI CCNNGG 3 cut(s) 549, 652, 1085
BseGI GGATG 1 cut(s) 463
BseJI GATNNNNATC 1 cut(s) 170
BseLI CCNNNNNNNGG 4 cut(s) 333, 550, 877, 1127
BseMII CTCAG 7 cut(s) 312, 405, 596, 698, 818, 838, 909
BseNI ACTGG 4 cut(s) 882, 1151, 1212, 1278
BseRI GAGGAG 4 cut(s) 158, 379, 467, 602
BseXI GCAGC 1 cut(s) 974
BshFI GGCC 2 cut(s) 651, 881
BsiHKCI CYCGRG 1 cut(s) 965
BsiSI CCGG 1 cut(s) 43
BslI CCNNNNNNNGG 4 cut(s) 333, 550, 877, 1127
BsmAI GTCTC 4 cut(s) 46, 614, 735, 1109
BsmBI CGTCTC 1 cut(s) 46
BsmI GAATGC 2 cut(s) 938, 1249
BsnI GGCC 2 cut(s) 651, 881
BsoBI CYCGRG 1 cut(s) 965
Bsp143I GATC 5 cut(s) 147, 361, 366, 481, 760
BspACI CCGC 3 cut(s) 696, 1001, 1176
BspANI GGCC 2 cut(s) 651, 881
BspCNI CTCAG 7 cut(s) 311, 404, 597, 697, 817, 837, 910
BspHI TCATGA 1 cut(s) 1015
BspMAI CTGCAG 2 cut(s) 106, 473
BspOI GCTAGC 1 cut(s) 894
BspPI GGATC 1 cut(s) 142
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 4 cut(s) 882, 1151, 1212, 1278
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 3 cut(s) 549, 652, 1085
BssMI GATC 5 cut(s) 147, 361, 366, 481, 760
BssNAI GTATAC 1 cut(s) 954
BssNI GRCGYC 1 cut(s) 46
BssT1I CCWWGG 3 cut(s) 549, 652, 1085
Bst1107I GTATAC 1 cut(s) 954
Bst4CI ACNGT 5 cut(s) 509, 625, 729, 1065, 1135
Bst6I CTCTTC 5 cut(s) 192, 224, 297, 309, 790
BstACI GRCGYC 1 cut(s) 46
BstC8I GCNNGC 3 cut(s) 44, 536, 892
BstDEI CTNAG 8 cut(s) 298, 391, 605, 684, 804, 824, 918, 1004
BstENI CCTNNNNNAGG 1 cut(s) 1125
BstF5I GGATG 1 cut(s) 463
BstH2I RGCGCY 1 cut(s) 945
BstHHI GCGC 2 cut(s) 944, 1040
BstKTI GATC 5 cut(s) 150, 364, 369, 484, 763
BstMAI GTCTC 4 cut(s) 46, 614, 735, 1109
BstMBI GATC 5 cut(s) 147, 361, 366, 481, 760
BstMWI GCNNNNNNNGC 3 cut(s) 213, 477, 887
BstSFI CTRYAG 2 cut(s) 102, 469
BstV1I GCAGC 1 cut(s) 974
BstX2I RGATCY 1 cut(s) 147
BstXI CCANNNNNNTGG 1 cut(s) 647
BstYI RGATCY 1 cut(s) 147
BstZ17I GTATAC 1 cut(s) 954
Bsu36I CCTNAGG 1 cut(s) 391
BsuI GTATCC 1 cut(s) 411
BsuRI GGCC 2 cut(s) 651, 881
BtgZI GCGATG 1 cut(s) 739
BtsCI GGATG 1 cut(s) 463
BtsI GCAGTG 1 cut(s) 478
BtsIMutI CAGTG 4 cut(s) 174, 478, 514, 692
Cac8I GCNNGC 3 cut(s) 44, 536, 892
CciI TCATGA 1 cut(s) 1015
CfoI GCGC 2 cut(s) 944, 1040
Cfr10I RCCGGY 1 cut(s) 42
CseI GACGC 3 cut(s) 35, 63, 817
Csp6I GTAC 3 cut(s) 659, 795, 1222
CviAII CATG 2 cut(s) 903, 1016
CviQI GTAC 3 cut(s) 659, 795, 1222
DdeI CTNAG 8 cut(s) 298, 391, 605, 684, 804, 824, 918, 1004
DpnI GATC 5 cut(s) 149, 363, 368, 483, 762
DpnII GATC 5 cut(s) 147, 361, 366, 481, 760
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 2 cut(s) 649, 879
Eam1104I CTCTTC 5 cut(s) 192, 224, 297, 309, 790
EarI CTCTTC 5 cut(s) 192, 224, 297, 309, 790
Eco130I CCWWGG 3 cut(s) 549, 652, 1085
Eco32I GATATC 1 cut(s) 1057
Eco57I CTGAAG 1 cut(s) 216
Eco81I CCTNAGG 1 cut(s) 391
Eco88I CYCGRG 1 cut(s) 965
EcoNI CCTNNNNNAGG 1 cut(s) 1125
EcoRV GATATC 1 cut(s) 1057
EcoT14I CCWWGG 3 cut(s) 549, 652, 1085
ErhI CCWWGG 3 cut(s) 549, 652, 1085
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 2 cut(s) 906, 1019
FalI AAGNNNNNCTT 2 cut(s) 645, 677
FatI CATG 2 cut(s) 902, 1015
FbaI TGATCA 1 cut(s) 361
FblI GTMKAC 2 cut(s) 953, 980
Fnu4HI GCNGC 2 cut(s) 988, 1177
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 2 cut(s) 988, 1177
FspAI RTGCGCAY 1 cut(s) 1039
FspBI CTAG 4 cut(s) 75, 225, 485, 891
FspI TGCGCA 1 cut(s) 1039
GlaI GCGC 2 cut(s) 943, 1039
GluI GCNGC 2 cut(s) 988, 1177
GsuI CTGGAG 1 cut(s) 1295
HaeII RGCGCY 1 cut(s) 945
HaeIII GGCC 2 cut(s) 651, 881
HapII CCGG 1 cut(s) 43
HgaI GACGC 3 cut(s) 35, 63, 817
HhaI GCGC 2 cut(s) 944, 1040
Hin1I GRCGYC 1 cut(s) 46
Hin1II CATG 2 cut(s) 906, 1019
Hin6I GCGC 2 cut(s) 942, 1038
HinP1I GCGC 2 cut(s) 942, 1038
HindIII AAGCTT 2 cut(s) 156, 1281
HpaII CCGG 1 cut(s) 43
HphI GGTGA 1 cut(s) 1086
Hpy166II GTNNAC 4 cut(s) 29, 133, 954, 981
Hpy188I TCNGA 9 cut(s) 51, 67, 120, 280, 301, 328, 366, 807, 919
Hpy188III TCNNGA 6 cut(s) 151, 404, 485, 566, 764, 1016
Hpy8I GTNNAC 4 cut(s) 29, 133, 954, 981
HpyAV CCTTC 1 cut(s) 603
HpyCH4III ACNGT 5 cut(s) 509, 625, 729, 1065, 1135
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 8 cut(s) 104, 207, 429, 471, 538, 843, 936, 1184
HpyF10VI GCNNNNNNNGC 3 cut(s) 213, 477, 887
HpyF3I CTNAG 8 cut(s) 298, 391, 605, 684, 804, 824, 918, 1004
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 1 cut(s) 46
Hsp92II CATG 2 cut(s) 906, 1019
HspAI GCGC 2 cut(s) 942, 1038
KroI GCCGGC 1 cut(s) 42
KroNI GCCGGC 1 cut(s) 44
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 5 cut(s) 147, 361, 366, 481, 760
Lsp1109I GCAGC 1 cut(s) 974
LweI GCATC 2 cut(s) 877, 1193
MaeI CTAG 4 cut(s) 75, 225, 485, 891
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 4 cut(s) 185, 235, 473, 1142
MalI GATC 5 cut(s) 149, 363, 368, 483, 762
MboI GATC 5 cut(s) 147, 361, 366, 481, 760
MflI RGATCY 1 cut(s) 147
MlsI TGGCCA 1 cut(s) 651
MluCI AATT 4 cut(s) 180, 424, 846, 1243
MluNI TGGCCA 1 cut(s) 651
MlyI GAGTC 4 cut(s) 138, 239, 243, 929
MmeI TCCRAC 2 cut(s) 408, 496
Mox20I TGGCCA 1 cut(s) 651
MreI CGCCGGCG 1 cut(s) 42
MroNI GCCGGC 1 cut(s) 42
MscI TGGCCA 1 cut(s) 651
MseI TTAA 3 cut(s) 341, 663, 959
MslI CAYNNNNRTG 2 cut(s) 120, 645
Msp20I TGGCCA 1 cut(s) 651
MspA1I CMGCKG 1 cut(s) 987
MspI CCGG 1 cut(s) 43
Mva1269I GAATGC 2 cut(s) 938, 1249
MwoI GCNNNNNNNGC 3 cut(s) 213, 477, 887
NaeI GCCGGC 1 cut(s) 44
NdeII GATC 5 cut(s) 147, 361, 366, 481, 760
NgoMIV GCCGGC 1 cut(s) 42
NheI GCTAGC 1 cut(s) 890
NlaIII CATG 2 cut(s) 906, 1019
NmeAIII GCCGAG 1 cut(s) 1049
NmuCI GTSAC 3 cut(s) 185, 235, 473
NsbI TGCGCA 1 cut(s) 1039
PagI TCATGA 1 cut(s) 1015
PctI GAATGC 2 cut(s) 938, 1249
PdiI GCCGGC 1 cut(s) 44
PfeI GAWTC 9 cut(s) 37, 62, 166, 284, 323, 596, 676, 779, 1008
PflMI CCANNNNNTGG 1 cut(s) 877
PkrI GCNGC 2 cut(s) 989, 1178
PleI GAGTC 4 cut(s) 137, 239, 242, 928
PpsI GAGTC 4 cut(s) 137, 239, 242, 928
PstI CTGCAG 2 cut(s) 106, 473
PsuI RGATCY 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 987
RsaI GTAC 3 cut(s) 660, 796, 1223
RsaNI GTAC 3 cut(s) 659, 795, 1222
RseI CAYNNNNRTG 2 cut(s) 120, 645
SaqAI TTAA 3 cut(s) 341, 663, 959
SatI GCNGC 2 cut(s) 988, 1177
Sau3AI GATC 5 cut(s) 147, 361, 366, 481, 760
ScaI AGTACT 1 cut(s) 660
SchI GAGTC 4 cut(s) 138, 239, 243, 929
SfaNI GCATC 2 cut(s) 877, 1193
SfcI CTRYAG 2 cut(s) 102, 469
SgrAI CRCCGGYG 1 cut(s) 42
SmiMI CAYNNNNRTG 2 cut(s) 120, 645
SmlI CTYRAG 2 cut(s) 564, 974
SmoI CTYRAG 2 cut(s) 564, 974
Sse9I AATT 4 cut(s) 180, 424, 846, 1243
SsiI CCGC 3 cut(s) 696, 1001, 1176
SspI AATATT 1 cut(s) 503
SspMI CTAG 4 cut(s) 75, 225, 485, 891
StyI CCWWGG 3 cut(s) 549, 652, 1085
TaaI ACNGT 5 cut(s) 509, 625, 729, 1065, 1135
TaiI ACGT 1 cut(s) 273
TasI AATT 4 cut(s) 180, 424, 846, 1243
TatI WGTACW 2 cut(s) 658, 1221
TauI GCSGC 1 cut(s) 1179
TfiI GAWTC 9 cut(s) 37, 62, 166, 284, 323, 596, 676, 779, 1008
Tru1I TTAA 3 cut(s) 341, 663, 959
Tru9I TTAA 3 cut(s) 341, 663, 959
TscAI CASTG 4 cut(s) 181, 478, 514, 692
TseFI GTSAC 3 cut(s) 185, 235, 473
TseI GCWGC 1 cut(s) 987
Tsp45I GTSAC 3 cut(s) 185, 235, 473
TspDTI ATGAA 6 cut(s) 84, 279, 504, 510, 742, 1179
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 4 cut(s) 181, 478, 514, 692
Van91I CCANNNNNTGG 1 cut(s) 877
XagI CCTNNNNNAGG 1 cut(s) 1125
XapI RAATTY 1 cut(s) 180
XbaI TCTAGA 1 cut(s) 484
XmiI GTMKAC 2 cut(s) 953, 980
XspI CTAG 4 cut(s) 75, 225, 485, 891
ZrmI AGTACT 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.