Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003544

Physical Location & Seq

Genomic Coordinates Reverse (-)

49328105 .. 49347388

Gene Structure 19284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG310000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCAATTGATGCTAGCCTGTCAAATTGGTTGGGTTCATCAGAAGCTACACTTGTTAACAAGACTAGCACAATATCTCTGGACACATCTATGCCTGAGAAAAGCATGTCCTATGGATTACCACACTCAGTAACAAGCCACGAAGATAGACCAATTTTAGGTGCATTAATAGTTGAAGAGCTGAGACAGTTTTCAGCTTCATCTTCACCGCGGAAGTCACCCAGTAGAAGCCCCGATGAGATGGCCATAATTGGGACTGTTGGGAGCTACTGGAATGATCACACTGGTCCTGCCAAGGGTTCTAGCGCCTCCTCTTACAAAGGAATACCAAACACGACCAGCAAGTACAGAGAGGATAGAAGAGTCAACTGGCACTCTACCCCATTTGAGACACGGCTGGAAAGAGCTTTGAATAGAGGTGCTGCAGATGCTTACTCTTCTTCTCGTACGCCTCATGGTTTCATTTCTGGGTTCATAAGGAAACAACTCCCGTTGGGATTAACCTATAATTTCACAGCAGTGAGGACTAATGCTCGAATTGTGGAAGGGGATCCAGGTAAATGCCCAACCAAGCCAAAAATGAAATGGCGTTATTATTCATCTTCAGCTCGCCACAATGTAGCCATTACTTTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.36

Weight (kDa)

9.77

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04030 AT1G04030 AT5G44040
fragaria_vesca	FvH4_2g20800 FvH4_2g20800
malus_domestica	MD05G1191900.v1.1 MD10G1178600.v1.1 MD10G1178700.v1.1
prunus_persica	Prupe.8G218000_v2.0.a1 Prupe.8G218000_v2.0.a1
pyrus_communis	pycom05g17880 pycom10g15500
rosa_chinensis	RchiOBHm_Chr0c16g0499811 RchiOBHm_Chr6g0287131 RchiOBHm_Chr6g0287181
rosa_laevigata	RLG00000012518
rosa_multiflora	Rmu_sc0005297.1_g000021
rosa_roxburghii	Rroxscaffold_7G00181680
rosa_rugosa	Rorug06G0185800 Rorug06G0185900 Rorug06G0185900
rosa_samantha	Rh6AG297200 Rh6BG302400 Rh6CG307500 Rh6CG309500 Rh6CG309800 Rh6CG310000 Rh6CG310400 Rh6CG310600 Rh6DG293100 Rh6DG293400 Rh6DG293600 Rh6DG294000 Rh6DG294300
rosa_wichuraiana	Rw6G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	211
AciI	CCGC	2 cut(s)	209, 211
AclWI	GGATC	2 cut(s)	545, 558
AcoI	YGGCCR	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	588
AfaI	GTAC	2 cut(s)	347, 448
AfiI	CCNNNNNNNGG	3 cut(s)	158, 252, 296
AgsI	TTSAA	2 cut(s)	176, 412
AjnI	CCWGG	1 cut(s)	553
AleI	CACNNNNGTG	1 cut(s)	518
AluBI	AGCT	6 cut(s)	47, 181, 197, 267, 407, 608
AluI	AGCT	6 cut(s)	47, 181, 197, 267, 407, 608
Alw26I	GTCTC	2 cut(s)	178, 383
AlwI	GGATC	2 cut(s)	545, 558
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	1 cut(s)	422
AseI	ATTAAT	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	2 cut(s)	198, 210
AsuNHI	GCTAGC	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	287
BalI	TGGCCA	1 cut(s)	245
BamHI	GGATCC	1 cut(s)	550
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	1 cut(s)	235
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	1 cut(s)	555
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	178, 383
BfaI	CTAG	3 cut(s)	15, 66, 303
BfmI	CTRYAG	1 cut(s)	423
BfoI	RGCGCY	1 cut(s)	309
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	555
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	552
BmrFI	CCNGG	1 cut(s)	555
BmrI	ACTGGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	418
BmtI	GCTAGC	1 cut(s)	18
BmuI	ACTGGG	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	209, 294
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 252, 296
Bse1I	ACTGG	4 cut(s)	222, 275, 289, 374
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	2 cut(s)	209, 294
BseLI	CCNNNNNNNGG	3 cut(s)	158, 252, 296
BseMII	CTCAG	3 cut(s)	87, 141, 173
BseNI	ACTGG	4 cut(s)	222, 275, 289, 374
BseRI	GAGGAG	1 cut(s)	301
BseXI	GCAGC	1 cut(s)	409
Bsh1236I	CGCG	1 cut(s)	211
BshFI	GGCC	1 cut(s)	245
BsiWI	CGTACG	1 cut(s)	446
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	3 cut(s)	158, 252, 296
BsmAI	GTCTC	2 cut(s)	178, 383
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	277, 550
BspACI	CCGC	2 cut(s)	209, 211
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	3 cut(s)	88, 140, 174
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	552
BspMAI	CTGCAG	1 cut(s)	427
BspOI	GCTAGC	1 cut(s)	18
BspPI	GGATC	2 cut(s)	545, 558
BspQI	GCTCTTC	1 cut(s)	171
BsrI	ACTGG	4 cut(s)	222, 275, 289, 374
BssECI	CCNNGG	2 cut(s)	209, 294
BssMI	GATC	2 cut(s)	277, 550
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	2 cut(s)	189, 259
Bst6I	CTCTTC	3 cut(s)	171, 355, 442
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	16, 610
BstDEI	CTNAG	3 cut(s)	96, 127, 182
BstDSI	CCRYGG	1 cut(s)	209
BstFNI	CGCG	1 cut(s)	211
BstH2I	RGCGCY	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	2 cut(s)	280, 553
BstMAI	GTCTC	2 cut(s)	178, 383
BstMBI	GATC	2 cut(s)	277, 550
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 428
BstNI	CCWGG	1 cut(s)	555
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	553
BstSFI	CTRYAG	1 cut(s)	423
BstUI	CGCG	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	409
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
BsuRI	GGCC	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	209
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	2 cut(s)	282, 525
Cac8I	GCNNGC	2 cut(s)	16, 610
CfoI	GCGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	287
Cfr42I	CCGCGG	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	346, 447
CviAII	CATG	2 cut(s)	106, 455
CviQI	GTAC	2 cut(s)	346, 447
DdeI	CTNAG	3 cut(s)	96, 127, 182
DpnI	GATC	2 cut(s)	279, 552
DpnII	GATC	2 cut(s)	277, 550
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	3 cut(s)	171, 355, 442
EarI	CTCTTC	3 cut(s)	171, 355, 442
Eco130I	CCWWGG	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	588
EcoRII	CCWGG	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	2 cut(s)	109, 458
FaiI	YATR	8 cut(s)	92, 107, 114, 248, 456, 476, 507, 637
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	2 cut(s)	105, 454
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	423
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	3 cut(s)	15, 66, 303
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	1 cut(s)	423
HaeII	RGCGCY	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	2 cut(s)	109, 458
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	2 cut(s)	58, 367
HindII	GTYRAC	2 cut(s)	58, 367
HinfI	GANTC	1 cut(s)	363
HpaI	GTTAAC	1 cut(s)	58
HphI	GGTGA	2 cut(s)	198, 210
Hpy166II	GTNNAC	2 cut(s)	58, 367
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	2 cut(s)	58, 367
HpyAV	CCTTC	1 cut(s)	539
HpyCH4III	ACNGT	2 cut(s)	189, 259
HpyCH4V	TGCA	2 cut(s)	164, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 428
HpyF3I	CTNAG	3 cut(s)	96, 127, 182
Hsp92II	CATG	2 cut(s)	109, 458
HspAI	GCGC	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	277
KspAI	GTTAAC	1 cut(s)	58
KspI	CCGCGG	1 cut(s)	212
Kzo9I	GATC	2 cut(s)	277, 550
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	264
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	3 cut(s)	15, 66, 303
MaeIII	GTNAC	2 cut(s)	130, 216
MalI	GATC	2 cut(s)	279, 552
MboI	GATC	2 cut(s)	277, 550
MboII	GAAGA	7 cut(s)	155, 188, 195, 372, 429, 432, 594
MfeI	CAATTG	1 cut(s)	6
MflI	RGATCY	1 cut(s)	550
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	6 cut(s)	6, 25, 153, 249, 508, 537
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	1 cut(s)	372
MnlI	CCTC	6 cut(s)	319, 322, 346, 410, 462, 516
Mox20I	TGGCCA	1 cut(s)	245
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	3 cut(s)	57, 167, 500
MslI	CAYNNNNRTG	2 cut(s)	89, 518
Msp20I	TGGCCA	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	211
MspR9I	CCNGG	1 cut(s)	555
MunI	CAATTG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	555
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	2 cut(s)	11, 428
NdeII	GATC	2 cut(s)	277, 550
NheI	GCTAGC	1 cut(s)	14
NlaIII	CATG	2 cut(s)	109, 458
NlaIV	GGNNCC	1 cut(s)	552
NmuCI	GTSAC	1 cut(s)	216
NspI	RCATGY	1 cut(s)	109
OliI	CACNNNNGTG	1 cut(s)	518
PciSI	GCTCTTC	1 cut(s)	171
Pfl23II	CGTACG	1 cut(s)	446
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
PshBI	ATTAAT	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	553
PspLI	CGTACG	1 cut(s)	446
PspN4I	GGNNCC	1 cut(s)	552
PspPI	GGNCC	1 cut(s)	287
PstI	CTGCAG	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	550
RsaI	GTAC	2 cut(s)	347, 448
RsaNI	GTAC	2 cut(s)	346, 447
RseI	CAYNNNNRTG	2 cut(s)	89, 518
SacII	CCGCGG	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	57, 167, 500
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	2 cut(s)	277, 550
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	372
ScrFI	CCNGG	1 cut(s)	555
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	423
Sfr303I	CCGCGG	1 cut(s)	212
SgrBI	CCGCGG	1 cut(s)	212
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	2 cut(s)	89, 518
Sse9I	AATT	6 cut(s)	6, 25, 153, 249, 508, 537
SsiI	CCGC	2 cut(s)	209, 211
SspMI	CTAG	3 cut(s)	15, 66, 303
StyD4I	CCNGG	1 cut(s)	553
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	189, 259
TaqI	TCGA	1 cut(s)	535
TasI	AATT	6 cut(s)	6, 25, 153, 249, 508, 537
TatI	WGTACW	1 cut(s)	345
Tru1I	TTAA	3 cut(s)	57, 167, 500
Tru9I	TTAA	3 cut(s)	57, 167, 500
TscAI	CASTG	2 cut(s)	289, 525
TseFI	GTSAC	1 cut(s)	216
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	6 cut(s)	27, 189, 451, 463, 588, 596
TspRI	CASTG	2 cut(s)	289, 525
VpaK11BI	GGWCC	1 cut(s)	287
VspI	ATTAAT	1 cut(s)	167
XceI	RCATGY	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	582
XspI	CTAG	3 cut(s)	15, 66, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.