Rw6G025680

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
49116356 .. 49118477
2122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G025680.1

Sequence Viewer

Length: 1656 bp
ATGACCGTTTTGTCCCTTTCCCTCCCCCCCTTTTACCTTTTTCTCAAAGTTTCTAAATTCTTTCTCACCAAACCCAACGGCCATCGCTCTCTTTCTCTCTCGTTCTCTTCTTCTCTCACTCGCAGAGATCAAAGATGCATTGGTTGCTTTGAAAACCCAGAACCCAAATCACAGAAAGACCCAATCTTTGAGGGAGAAGTAGAGAGATTTGTAATGGGTTGCTTTCTTGCGTGTTTTGGTTCTTCCAAAGATAAAAGCCGCAGGAATCAACAGAGGTACAGGGTTCAGCACCGAGAACAAAGATATACAAGTTTTGAGCCTGTTCAATCTGCTGTCTCTTCTGTGCCGGTTTGGGAGAACCACATTAGCCCTGAATTGAAATATGAAAAACCCATCAGCCCGGAATTGAAATGTGAAAAACCCATCAGCCCAGAATTGAAGGATGAAAAACCCATCAGCGTGGAATTGAAGGAAGAAAAACCCCGTAGCCCAGAATTGGAAGAAGTTAGGGATAGGCCGGTGGATCAACTGAGCTTCATTACTAGAAAGAAAGTTACTTTTGATTCTAATGTCCAAACCTATGAGCATGTTGCAATCAACGAATCCACGGATCTTTTATTCGATAGTAAAGAGTGTCAGAAAGAGGAGGGGAAAACCTTGAAAGAATCAAGCCAATCCAAGACTTCGTCTGAAGATGGTTCCATCACTTCTAGCTCAGGGTCATACCCTCCTAATCATAGGTACCAGAATTGCAGGGACAGTGACGATGAAGATGAACCATTAGACTATGATGAGGACAGTGATCTCGATGATGATGATCTTGAGGATGACACTGATGATAATGGGGAACTAGAGTATGAAGATGAAATTGTAGACTCGAAGAGAGGGACACAAGTAATGGCTGAGGATTCTGATAGTACAATGCTGAAAAAGCCAACTGGGCTAAACTACAGTGCTCGTGATAGGAGTGGTTATGTTCATGCTGTGCTTAACCCGGTTGAAAATCTCACACAATGGAAAGCTGTCAAAGCCAAAAAGACAACAGTAATGAAGCCTCAGAAGGAGAATTTCACCCTGGCTGATGAACCCCGGATTTCGTTCAGTTCAGAGCCAAGTTTTAAGGAAGTATCGTCGAGTTTCAAATCTCTTAAGAGGCAATCTGGTCAGGCCAGGAATTCTAACCAAGAAATGGCAGTTGATGCTAGCCTGTCAAATTGGTTGGGTTCATCAGAAGCTACACCTGTTAACAAGACTAGCACAATATCTCTGGACACTGCTACACCTGAGAAAAGCATGTCCTTCGGATCACCACACTCAGCAACAAGCCACGAAGATAGACCAATTTTAGGTGCATTAACAGTTGAAGAGCTGAGACAGTTTTCAGCTTCATCTTCACCGCGGAAGTCACCCAGTAGAAGCCCTGATGAGATGGCCATAATTGGGACTGTTGGGAGCTACTGGAATGATCACACTGGTCCTGCCAAGGGTTCTGGCACCTCCTCTTACAAAGGAATACCAAACACGACCAGCAAGTACAGAGAGGATAGAAGAGTCAACTGGCACTCTACCCCATTTGAGACACGGTTGGAAAGAGCTTTGAATAGAGGTGCTGCTGCAGATGCTTACTCTTCTTCTCGTACGCCTCATGGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

551

Amino Acids

61.97

Weight (kDa)

5.37

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
Acc65I GGTACC 1 cut(s) 741
AccB1I GGYRCC 2 cut(s) 741, 1493
AccB7I CCANNNNNTGG 1 cut(s) 1189
AccI GTMKAC 1 cut(s) 873
AccII CGCG 1 cut(s) 1399
AciI CCGC 3 cut(s) 259, 1397, 1399
AclWI GGATC 3 cut(s) 531, 618, 1312
AcoI YGGCCR 2 cut(s) 79, 1431
AcsI RAATTY 3 cut(s) 56, 1066, 1174
AcuI CTGAAG 1 cut(s) 711
AfaI GTAC 5 cut(s) 278, 743, 919, 1535, 1639
AfiI CCNNNNNNNGG 5 cut(s) 496, 1189, 1346, 1440, 1484
AflII CTTAAG 1 cut(s) 1148
AjnI CCWGG 2 cut(s) 1074, 1169
AluBI AGCT 8 cut(s) 534, 714, 1022, 1235, 1369, 1385, 1455, 1595
AluI AGCT 8 cut(s) 534, 714, 1022, 1235, 1369, 1385, 1455, 1595
Alw21I GWGCWC 1 cut(s) 958
Alw26I GTCTC 3 cut(s) 340, 1366, 1571
AlwI GGATC 3 cut(s) 531, 618, 1312
AoxI GGCC 4 cut(s) 79, 515, 1167, 1431
ApeKI GCWGC 2 cut(s) 1610, 1613
ApoI RAATTY 3 cut(s) 56, 1066, 1174
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
Asp718I GGTACC 1 cut(s) 741
AspS9I GGNCC 1 cut(s) 1475
AsuC2I CCSGG 3 cut(s) 401, 995, 1090
AsuHPI GGTGA 5 cut(s) 58, 1063, 1299, 1386, 1398
AsuNHI GCTAGC 1 cut(s) 1202
AvaII GGWCC 1 cut(s) 1475
BalI TGGCCA 1 cut(s) 1433
BanI GGYRCC 2 cut(s) 741, 1493
BauI CACGAG 1 cut(s) 957
Bbv12I GWGCWC 1 cut(s) 958
BbvCI CCTCAGC 1 cut(s) 903
BbvI GCAGC 2 cut(s) 1597, 1600
BccI CCATC 7 cut(s) 90, 401, 431, 461, 689, 710, 1423
BceAI ACGGC 1 cut(s) 94
BcgI CGANNNNNNTGC 2 cut(s) 1282, 1316
BciT130I CCWGG 2 cut(s) 1076, 1171
BclI TGATCA 1 cut(s) 1465
BcnI CCSGG 3 cut(s) 401, 995, 1090
BcoDI GTCTC 3 cut(s) 340, 1366, 1571
BfaI CTAG 5 cut(s) 543, 711, 851, 1203, 1254
BfmI CTRYAG 2 cut(s) 949, 1614
BfrI CTTAAG 1 cut(s) 1148
BglI GCCNNNNNGGC 1 cut(s) 940
BisI GCNGC 3 cut(s) 259, 1611, 1614
BlsI GCNGC 3 cut(s) 260, 1612, 1615
Bme1390I CCNGG 5 cut(s) 401, 995, 1076, 1090, 1171
Bme18I GGWCC 1 cut(s) 1475
BmgT120I GGNCC 1 cut(s) 1475
BmiI GGNNCC 3 cut(s) 700, 743, 1495
BmrFI CCNGG 5 cut(s) 401, 995, 1076, 1090, 1171
BmrI ACTGGG 2 cut(s) 948, 1404
BmsI GCATC 3 cut(s) 125, 1189, 1609
BmtI GCTAGC 1 cut(s) 1206
BmuI ACTGGG 2 cut(s) 948, 1404
Bpu10I CCTNAGC 2 cut(s) 715, 903
BpuEI CTTGAG 1 cut(s) 842
BpuMI CCSGG 3 cut(s) 401, 995, 1090
BsaBI GATNNNNATC 1 cut(s) 816
BsaJI CCNNGG 5 cut(s) 606, 1074, 1088, 1397, 1482
Bsc4I CCNNNNNNNGG 5 cut(s) 496, 1189, 1346, 1440, 1484
Bse118I RCCGGY 2 cut(s) 346, 517
Bse1I ACTGG 5 cut(s) 943, 1410, 1463, 1477, 1562
Bse8I GATNNNNATC 1 cut(s) 816
BseBI CCWGG 2 cut(s) 1076, 1171
BseDI CCNNGG 5 cut(s) 606, 1074, 1088, 1397, 1482
BseGI GGATG 2 cut(s) 448, 832
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 5 cut(s) 496, 1189, 1346, 1440, 1484
BseMII CTCAG 7 cut(s) 521, 729, 894, 1070, 1275, 1329, 1361
BseNI ACTGG 5 cut(s) 943, 1410, 1463, 1477, 1562
BseRI GAGGAG 2 cut(s) 659, 1489
BseXI GCAGC 2 cut(s) 1597, 1600
Bsh1236I CGCG 1 cut(s) 1399
BshFI GGCC 4 cut(s) 81, 517, 1169, 1433
BshNI GGYRCC 2 cut(s) 741, 1493
BsiHKAI GWGCWC 1 cut(s) 958
BsiSI CCGG 5 cut(s) 347, 401, 518, 995, 1090
BsiWI CGTACG 1 cut(s) 1637
BslFI GGGAC 3 cut(s) 770, 901, 1456
BslI CCNNNNNNNGG 5 cut(s) 496, 1189, 1346, 1440, 1484
BsmAI GTCTC 3 cut(s) 340, 1366, 1571
BsmFI GGGAC 3 cut(s) 770, 901, 1456
BsnI GGCC 4 cut(s) 81, 517, 1169, 1433
Bsp1286I GDGCHC 1 cut(s) 958
Bsp143I GATC 7 cut(s) 127, 523, 610, 802, 817, 1304, 1465
BspACI CCGC 3 cut(s) 259, 1397, 1399
BspANI GGCC 4 cut(s) 81, 517, 1169, 1433
BspCNI CTCAG 7 cut(s) 522, 728, 895, 1069, 1276, 1328, 1362
BspFNI CGCG 1 cut(s) 1399
BspLI GGNNCC 3 cut(s) 700, 743, 1495
BspMAI CTGCAG 1 cut(s) 1618
BspOI GCTAGC 1 cut(s) 1206
BspPI GGATC 3 cut(s) 531, 618, 1312
BspQI GCTCTTC 1 cut(s) 1359
BspT107I GGYRCC 2 cut(s) 741, 1493
BspTI CTTAAG 1 cut(s) 1148
BsrFI RCCGGY 2 cut(s) 346, 517
BsrI ACTGG 5 cut(s) 943, 1410, 1463, 1477, 1562
BssAI RCCGGY 2 cut(s) 346, 517
BssECI CCNNGG 5 cut(s) 606, 1074, 1088, 1397, 1482
BssMI GATC 7 cut(s) 127, 523, 610, 802, 817, 1304, 1465
BssSI CACGAG 1 cut(s) 957
BssT1I CCWWGG 1 cut(s) 1482
Bst2BI CACGAG 1 cut(s) 957
Bst2UI CCWGG 2 cut(s) 1076, 1171
Bst4CI ACNGT 9 cut(s) 7, 761, 800, 953, 1045, 1360, 1377, 1447, 1584
Bst6I CTCTTC 6 cut(s) 112, 343, 875, 1359, 1543, 1633
BstAFI CTTAAG 1 cut(s) 1148
BstAPI GCANNNNNTGC 2 cut(s) 144, 1199
BstC8I GCNNGC 1 cut(s) 1204
BstDEI CTNAG 7 cut(s) 530, 715, 903, 1056, 1284, 1315, 1370
BstDSI CCRYGG 2 cut(s) 606, 1397
BstF5I GGATG 2 cut(s) 448, 832
BstFNI CGCG 1 cut(s) 1399
BstKTI GATC 7 cut(s) 130, 526, 613, 805, 820, 1307, 1468
BstMAI GTCTC 3 cut(s) 340, 1366, 1571
BstMBI GATC 7 cut(s) 127, 523, 610, 802, 817, 1304, 1465
BstMWI GCNNNNNNNGC 6 cut(s) 144, 931, 940, 1028, 1199, 1619
BstNI CCWGG 2 cut(s) 1076, 1171
BstNSI RCATGY 2 cut(s) 590, 1297
BstSCI CCNGG 5 cut(s) 399, 993, 1074, 1088, 1169
BstSFI CTRYAG 2 cut(s) 949, 1614
BstUI CGCG 1 cut(s) 1399
BstV1I GCAGC 2 cut(s) 1597, 1600
BstX2I RGATCY 1 cut(s) 610
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 1 cut(s) 610
BsuRI GGCC 4 cut(s) 81, 517, 1169, 1433
BtgI CCRYGG 2 cut(s) 606, 1397
BtgZI GCGATG 1 cut(s) 68
BtsCI GGATG 2 cut(s) 448, 832
BtsI GCAGTG 1 cut(s) 1272
BtsIMutI CAGTG 6 cut(s) 766, 805, 831, 958, 1272, 1470
Cac8I GCNNGC 1 cut(s) 1204
Cfr10I RCCGGY 2 cut(s) 346, 517
Cfr13I GGNCC 1 cut(s) 1475
Cfr42I CCGCGG 1 cut(s) 1400
Csp6I GTAC 5 cut(s) 277, 742, 918, 1534, 1638
CviAII CATG 4 cut(s) 587, 980, 1294, 1646
CviQI GTAC 5 cut(s) 277, 742, 918, 1534, 1638
DdeI CTNAG 7 cut(s) 530, 715, 903, 1056, 1284, 1315, 1370
DpnI GATC 7 cut(s) 129, 525, 612, 804, 819, 1306, 1467
DpnII GATC 7 cut(s) 127, 523, 610, 802, 817, 1304, 1465
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 2 cut(s) 79, 1431
Eam1104I CTCTTC 6 cut(s) 112, 343, 875, 1359, 1543, 1633
EarI CTCTTC 6 cut(s) 112, 343, 875, 1359, 1543, 1633
Eco130I CCWWGG 1 cut(s) 1482
Eco47I GGWCC 1 cut(s) 1475
Eco57I CTGAAG 1 cut(s) 711
EcoRI GAATTC 1 cut(s) 1174
EcoRII CCWGG 2 cut(s) 1074, 1169
EcoT14I CCWWGG 1 cut(s) 1482
EcoT22I ATGCAT 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 1482
FaeI CATG 4 cut(s) 590, 983, 1297, 1649
FaqI GGGAC 3 cut(s) 770, 901, 1456
FatI CATG 4 cut(s) 586, 979, 1293, 1645
FbaI TGATCA 1 cut(s) 1465
FblI GTMKAC 1 cut(s) 873
Fnu4HI GCNGC 3 cut(s) 259, 1611, 1614
FokI GGATG 2 cut(s) 455, 839
Fsp4HI GCNGC 3 cut(s) 259, 1611, 1614
FspBI CTAG 5 cut(s) 543, 711, 851, 1203, 1254
GluI GCNGC 3 cut(s) 259, 1611, 1614
HaeIII GGCC 4 cut(s) 81, 517, 1169, 1433
HapII CCGG 5 cut(s) 347, 401, 518, 995, 1090
Hin1II CATG 4 cut(s) 590, 983, 1297, 1649
HincII GTYRAC 2 cut(s) 1246, 1555
HindII GTYRAC 2 cut(s) 1246, 1555
HinfI GANTC 7 cut(s) 265, 563, 602, 665, 875, 908, 1551
HpaI GTTAAC 1 cut(s) 1246
HpaII CCGG 5 cut(s) 347, 401, 518, 995, 1090
HphI GGTGA 5 cut(s) 58, 1063, 1299, 1386, 1398
Hpy166II GTNNAC 3 cut(s) 874, 1246, 1555
Hpy188I TCNGA 7 cut(s) 639, 691, 913, 1059, 1108, 1231, 1304
Hpy188III TCNNGA 4 cut(s) 806, 821, 959, 1268
Hpy8I GTNNAC 3 cut(s) 874, 1246, 1555
Hpy99I CGWCG 1 cut(s) 1135
HpyAV CCTTC 4 cut(s) 433, 463, 1054, 1309
HpyCH4III ACNGT 9 cut(s) 7, 761, 800, 953, 1045, 1360, 1377, 1447, 1584
HpyCH4V TGCA 5 cut(s) 138, 593, 753, 1352, 1616
HpyF10VI GCNNNNNNNGC 6 cut(s) 144, 931, 940, 1028, 1199, 1619
HpyF3I CTNAG 7 cut(s) 530, 715, 903, 1056, 1284, 1315, 1370
Hsp92II CATG 4 cut(s) 590, 983, 1297, 1649
KpnI GGTACC 1 cut(s) 745
Ksp22I TGATCA 1 cut(s) 1465
KspAI GTTAAC 1 cut(s) 1246
KspI CCGCGG 1 cut(s) 1400
Kzo9I GATC 7 cut(s) 127, 523, 610, 802, 817, 1304, 1465
LguI GCTCTTC 1 cut(s) 1359
LmnI GCTCC 1 cut(s) 1452
Lsp1109I GCAGC 2 cut(s) 1597, 1600
LweI GCATC 3 cut(s) 125, 1189, 1609
MaeI CTAG 5 cut(s) 543, 711, 851, 1203, 1254
MaeIII GTNAC 3 cut(s) 553, 761, 1404
MalI GATC 7 cut(s) 129, 525, 612, 804, 819, 1306, 1467
MboI GATC 7 cut(s) 127, 523, 610, 802, 817, 1304, 1465
MflI RGATCY 1 cut(s) 610
MhlI GDGCHC 1 cut(s) 958
MlsI TGGCCA 1 cut(s) 1433
MluNI TGGCCA 1 cut(s) 1433
MlyI GAGTC 2 cut(s) 869, 1560
MmeI TCCRAC 1 cut(s) 1566
Mox20I TGGCCA 1 cut(s) 1433
Mph1103I ATGCAT 1 cut(s) 140
MscI TGGCCA 1 cut(s) 1433
MseI TTAA 5 cut(s) 990, 1119, 1149, 1245, 1355
MslI CAYNNNNRTG 1 cut(s) 458
Msp20I TGGCCA 1 cut(s) 1433
MspA1I CMGCKG 1 cut(s) 1399
MspCI CTTAAG 1 cut(s) 1148
MspI CCGG 5 cut(s) 347, 401, 518, 995, 1090
MspR9I CCNGG 5 cut(s) 401, 995, 1076, 1090, 1171
MvaI CCWGG 2 cut(s) 1076, 1171
MvnI CGCG 1 cut(s) 1399
MwoI GCNNNNNNNGC 6 cut(s) 144, 931, 940, 1028, 1199, 1619
NciI CCSGG 3 cut(s) 401, 995, 1090
NdeII GATC 7 cut(s) 127, 523, 610, 802, 817, 1304, 1465
NheI GCTAGC 1 cut(s) 1202
NlaIII CATG 4 cut(s) 590, 983, 1297, 1649
NlaIV GGNNCC 3 cut(s) 700, 743, 1495
NmuCI GTSAC 2 cut(s) 761, 1404
NsiI ATGCAT 1 cut(s) 140
NspI RCATGY 2 cut(s) 590, 1297
PciSI GCTCTTC 1 cut(s) 1359
PfeI GAWTC 5 cut(s) 265, 563, 602, 665, 908
Pfl23II CGTACG 1 cut(s) 1637
PflFI GACNNNGTC 1 cut(s) 685
PflMI CCANNNNNTGG 1 cut(s) 1189
PkrI GCNGC 3 cut(s) 260, 1612, 1615
PleI GAGTC 2 cut(s) 869, 1559
PpsI GAGTC 2 cut(s) 869, 1559
Psp6I CCWGG 2 cut(s) 1074, 1169
PspGI CCWGG 2 cut(s) 1074, 1169
PspLI CGTACG 1 cut(s) 1637
PspN4I GGNNCC 3 cut(s) 700, 743, 1495
PspPI GGNCC 1 cut(s) 1475
PstI CTGCAG 1 cut(s) 1618
PsuI RGATCY 1 cut(s) 610
PsyI GACNNNGTC 1 cut(s) 685
RsaI GTAC 5 cut(s) 278, 743, 919, 1535, 1639
RsaNI GTAC 5 cut(s) 277, 742, 918, 1534, 1638
RseI CAYNNNNRTG 1 cut(s) 458
SacII CCGCGG 1 cut(s) 1400
SapI GCTCTTC 1 cut(s) 1359
SaqAI TTAA 5 cut(s) 990, 1119, 1149, 1245, 1355
SatI GCNGC 3 cut(s) 259, 1611, 1614
Sau3AI GATC 7 cut(s) 127, 523, 610, 802, 817, 1304, 1465
Sau96I GGNCC 1 cut(s) 1475
SchI GAGTC 2 cut(s) 869, 1560
ScrFI CCNGG 5 cut(s) 401, 995, 1076, 1090, 1171
SduI GDGCHC 1 cut(s) 958
SfaNI GCATC 3 cut(s) 125, 1189, 1609
SfcI CTRYAG 2 cut(s) 949, 1614
Sfr303I CCGCGG 1 cut(s) 1400
SgrBI CCGCGG 1 cut(s) 1400
SinI GGWCC 1 cut(s) 1475
SmiMI CAYNNNNRTG 1 cut(s) 458
SmlI CTYRAG 2 cut(s) 821, 1148
SmoI CTYRAG 2 cut(s) 821, 1148
SsiI CCGC 3 cut(s) 259, 1397, 1399
SspMI CTAG 5 cut(s) 543, 711, 851, 1203, 1254
StyD4I CCNGG 5 cut(s) 399, 993, 1074, 1088, 1169
StyI CCWWGG 1 cut(s) 1482
TaaI ACNGT 9 cut(s) 7, 761, 800, 953, 1045, 1360, 1377, 1447, 1584
TaqI TCGA 4 cut(s) 621, 807, 878, 1133
TatI WGTACW 2 cut(s) 917, 1533
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 5 cut(s) 265, 563, 602, 665, 908
Tru1I TTAA 5 cut(s) 990, 1119, 1149, 1245, 1355
Tru9I TTAA 5 cut(s) 990, 1119, 1149, 1245, 1355
TscAI CASTG 6 cut(s) 766, 805, 838, 958, 1279, 1477
TseFI GTSAC 2 cut(s) 761, 1404
TseI GCWGC 2 cut(s) 1610, 1613
Tsp45I GTSAC 2 cut(s) 761, 1404
TspGWI ACGGA 1 cut(s) 623
TspRI CASTG 6 cut(s) 766, 805, 838, 958, 1279, 1477
Tth111I GACNNNGTC 1 cut(s) 685
Van91I CCANNNNNTGG 1 cut(s) 1189
Vha464I CTTAAG 1 cut(s) 1148
VpaK11BI GGWCC 1 cut(s) 1475
XapI RAATTY 3 cut(s) 56, 1066, 1174
XceI RCATGY 2 cut(s) 590, 1297
XmiI GTMKAC 1 cut(s) 873
XspI CTAG 5 cut(s) 543, 711, 851, 1203, 1254
Zsp2I ATGCAT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.