RchiOBHm_Chr6g0287181

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
50568501 .. 50570994
2494 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25762

Sequence Viewer

Length: 1452 bp
ATGGGTTGCTTTCTTGCATGTTTTGGTTCTTCCAAAGATAAAAGCCGCAGGAATCAACAGAGGTACAGGGTTCAGCACCGAGAACAAAGATATACAAGTTTTGAGCCTGTTCAATCTGCTGTCTCTTCTGTGCCGGTTTGGGAAAACCCCATTAGCCCTGAATTGAAATATGAAAAACCCATCAGCCCGGAATTGAAATGTGAAAAACCCATCAGCCCAGAATTGAAGGATGAAAAACCCATCAGCGTGGAATTGAAGGAAGAAAAACCCCGTAGCCCAGAATTGGAAGAAGTTAGGGATAAGCCGGTGGATCAACTGAGCTTCATTACTAGAAAGAAAGTTACTTTTGATTCTAATGTCCAAACCTATGAGCATGTTGCAATCAACGAATCCACGGATCTTTTATTCGATAGTAAAGAGTGTCAGAAAGAGGAGGGGAAAACCTTGAAAGAATCAAGCCAATCCAAGACTTCGTCTGAAGATGGTTCCATCACTTCTAGCTCAGGGTCATACCCTCCTAATCATAGGTACCAGAATTGCAGGGACAGTGACGATGAAGATGAACCATTAGACTATGATGAGGACAGTGATCTCGATGATGATGATGATGATGATGATCTTGAGGATGACACTGATGATAATGGGGAACTAGAGTATGAAGATGAAATTGTAGACTCGAAGAGAGGGACACAAGTAATGGCTGAGGATTCTGATAGTGCAATGCCGAAAAAGCCAACTGGGCTAAACTACAGTGCTCGTGATAGGAGTGATTATGTTCATGCTGTGCTTAACCCGGTTGAAAATCTCACACAATGGAAAGCTGTCAAAGCCAAAAAGACAACAGTAATGAAGCCTCAGAAGGAGAATTTCACCCCAGCTGATGAACCCCGGATTTCGTTCAGTTCAGAGCCAATTTTTAAGGAAGTATCGTCGAGTTTCAAATCACTTAAGAGGCAACCTGGTCAGGCCAGGAATTCTAACCAAGAAATGGCAGTTGATGCTAGCCTGTCAAATTGGTTGGGTTCATCAGAATCTACACCTATTAACAAGACTAGCACAATATCTCTGGACACTGCTACACCTGAGAAAAGCATGTCCTACGGATCACCACACTCGGCAACAAGCCACGAAGATAGACCAATTTTAGGTGCGTTAACAGTTGAAGAGCTGAGACAGTTTTCAGCTTCATCTTCGCCGCGGAAGTCACCCAGTAGAAGCCCTGATGAGATGGCCATAATTGGGACTGTTGGGAGCTACTGGAATGATCACACTGGTCCTGCCAAGGGTTCTGGCGCCTCCTCTTACAAAGGAATACCGAACACGACCAGCAAGTACAGAGAGGATAGAAGAGTCAACTGGCACTCTACCCCATTTGAGACACGGTTGGAAAGAGCTTTGAATAGAGGTGCTGCAGATGCTTACTCTTCTTCTCATACGCCTCATGGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

483

Amino Acids

54.15

Weight (kDa)

4.95

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 528
AccB1I GGYRCC 2 cut(s) 528, 1292
AccB7I CCANNNNNTGG 1 cut(s) 988
AccI GTMKAC 1 cut(s) 672
AccII CGCG 1 cut(s) 1198
AciI CCGC 3 cut(s) 46, 1196, 1198
AclWI GGATC 3 cut(s) 318, 405, 1111
AcoI YGGCCR 1 cut(s) 1230
AcsI RAATTY 2 cut(s) 865, 973
AcuI CTGAAG 1 cut(s) 498
AcyI GRCGYC 1 cut(s) 1293
AfaI GTAC 3 cut(s) 65, 530, 1334
AfiI CCNNNNNNNGG 5 cut(s) 283, 988, 1145, 1239, 1283
AflII CTTAAG 1 cut(s) 947
AjnI CCWGG 2 cut(s) 958, 968
AluBI AGCT 8 cut(s) 321, 501, 821, 878, 1168, 1184, 1254, 1394
AluI AGCT 8 cut(s) 321, 501, 821, 878, 1168, 1184, 1254, 1394
Alw21I GWGCWC 1 cut(s) 757
Alw26I GTCTC 3 cut(s) 127, 1165, 1370
AlwI GGATC 3 cut(s) 318, 405, 1111
AoxI GGCC 2 cut(s) 966, 1230
ApeKI GCWGC 1 cut(s) 1409
ApoI RAATTY 2 cut(s) 865, 973
Asp718I GGTACC 1 cut(s) 528
AspLEI GCGC 1 cut(s) 1295
AspS9I GGNCC 1 cut(s) 1274
AsuC2I CCSGG 3 cut(s) 188, 794, 889
AsuHPI GGTGA 3 cut(s) 862, 1098, 1197
AsuNHI GCTAGC 1 cut(s) 1001
AvaII GGWCC 1 cut(s) 1274
BalI TGGCCA 1 cut(s) 1232
BanI GGYRCC 2 cut(s) 528, 1292
BauI CACGAG 1 cut(s) 756
Bbv12I GWGCWC 1 cut(s) 757
BbvCI CCTCAGC 1 cut(s) 702
BbvI GCAGC 1 cut(s) 1396
BccI CCATC 6 cut(s) 188, 218, 248, 476, 497, 1222
BciT130I CCWGG 2 cut(s) 960, 970
BclI TGATCA 1 cut(s) 1264
BcnI CCSGG 3 cut(s) 188, 794, 889
BcoDI GTCTC 3 cut(s) 127, 1165, 1370
BfaI CTAG 5 cut(s) 330, 498, 650, 1002, 1053
BfmI CTRYAG 2 cut(s) 748, 1410
BfoI RGCGCY 1 cut(s) 1296
BfrI CTTAAG 1 cut(s) 947
BglI GCCNNNNNGGC 1 cut(s) 739
BisI GCNGC 3 cut(s) 46, 1196, 1410
BlsI GCNGC 3 cut(s) 47, 1197, 1411
Bme1390I CCNGG 5 cut(s) 188, 794, 889, 960, 970
Bme18I GGWCC 1 cut(s) 1274
BmgT120I GGNCC 1 cut(s) 1274
BmiI GGNNCC 3 cut(s) 487, 530, 1294
BmrFI CCNGG 5 cut(s) 188, 794, 889, 960, 970
BmrI ACTGGG 2 cut(s) 747, 1203
BmsI GCATC 2 cut(s) 988, 1405
BmtI GCTAGC 1 cut(s) 1005
BmuI ACTGGG 2 cut(s) 747, 1203
Bpu10I CCTNAGC 2 cut(s) 502, 702
BpuEI CTTGAG 1 cut(s) 641
BpuMI CCSGG 3 cut(s) 188, 794, 889
BsaBI GATNNNNATC 1 cut(s) 615
BsaHI GRCGYC 1 cut(s) 1293
BsaJI CCNNGG 4 cut(s) 393, 887, 1196, 1281
Bsc4I CCNNNNNNNGG 5 cut(s) 283, 988, 1145, 1239, 1283
Bse118I RCCGGY 2 cut(s) 133, 304
Bse1I ACTGG 5 cut(s) 742, 1209, 1262, 1276, 1361
Bse3DI GCAATG 1 cut(s) 726
Bse8I GATNNNNATC 1 cut(s) 615
BseBI CCWGG 2 cut(s) 960, 970
BseDI CCNNGG 4 cut(s) 393, 887, 1196, 1281
BseGI GGATG 2 cut(s) 235, 631
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 5 cut(s) 283, 988, 1145, 1239, 1283
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 6 cut(s) 308, 516, 693, 869, 1074, 1160
BseNI ACTGG 5 cut(s) 742, 1209, 1262, 1276, 1361
BseRI GAGGAG 2 cut(s) 446, 1288
BseXI GCAGC 1 cut(s) 1396
BseYI CCCAGC 1 cut(s) 874
Bsh1236I CGCG 1 cut(s) 1198
BshFI GGCC 2 cut(s) 968, 1232
BshNI GGYRCC 2 cut(s) 528, 1292
BsiHKAI GWGCWC 1 cut(s) 757
BsiSI CCGG 5 cut(s) 134, 188, 305, 794, 889
BslFI GGGAC 3 cut(s) 557, 700, 1255
BslI CCNNNNNNNGG 5 cut(s) 283, 988, 1145, 1239, 1283
BsmAI GTCTC 3 cut(s) 127, 1165, 1370
BsmFI GGGAC 3 cut(s) 557, 700, 1255
BsnI GGCC 2 cut(s) 968, 1232
Bsp1286I GDGCHC 1 cut(s) 757
Bsp143I GATC 6 cut(s) 310, 397, 589, 616, 1103, 1264
BspACI CCGC 3 cut(s) 46, 1196, 1198
BspANI GGCC 2 cut(s) 968, 1232
BspCNI CTCAG 6 cut(s) 309, 515, 694, 868, 1075, 1161
BspFNI CGCG 1 cut(s) 1198
BspLI GGNNCC 3 cut(s) 487, 530, 1294
BspMAI CTGCAG 1 cut(s) 1414
BspOI GCTAGC 1 cut(s) 1005
BspPI GGATC 3 cut(s) 318, 405, 1111
BspQI GCTCTTC 1 cut(s) 1158
BspT107I GGYRCC 2 cut(s) 528, 1292
BspTI CTTAAG 1 cut(s) 947
BsrDI GCAATG 1 cut(s) 726
BsrFI RCCGGY 2 cut(s) 133, 304
BsrI ACTGG 5 cut(s) 742, 1209, 1262, 1276, 1361
BssAI RCCGGY 2 cut(s) 133, 304
BssECI CCNNGG 4 cut(s) 393, 887, 1196, 1281
BssMI GATC 6 cut(s) 310, 397, 589, 616, 1103, 1264
BssNI GRCGYC 1 cut(s) 1293
BssSI CACGAG 1 cut(s) 756
BssT1I CCWWGG 1 cut(s) 1281
Bst2BI CACGAG 1 cut(s) 756
Bst2UI CCWGG 2 cut(s) 960, 970
Bst4CI ACNGT 8 cut(s) 548, 587, 752, 844, 1159, 1176, 1246, 1383
Bst6I CTCTTC 5 cut(s) 130, 674, 1158, 1342, 1429
BstACI GRCGYC 1 cut(s) 1293
BstAFI CTTAAG 1 cut(s) 947
BstAPI GCANNNNNTGC 1 cut(s) 998
BstC8I GCNNGC 1 cut(s) 1003
BstDEI CTNAG 6 cut(s) 317, 502, 702, 855, 1083, 1169
BstDSI CCRYGG 2 cut(s) 393, 1196
BstF5I GGATG 2 cut(s) 235, 631
BstFNI CGCG 1 cut(s) 1198
BstH2I RGCGCY 1 cut(s) 1296
BstHHI GCGC 1 cut(s) 1295
BstKTI GATC 6 cut(s) 313, 400, 592, 619, 1106, 1267
BstMAI GTCTC 3 cut(s) 127, 1165, 1370
BstMBI GATC 6 cut(s) 310, 397, 589, 616, 1103, 1264
BstMWI GCNNNNNNNGC 5 cut(s) 730, 739, 827, 998, 1415
BstNI CCWGG 2 cut(s) 960, 970
BstNSI RCATGY 3 cut(s) 21, 377, 1096
BstSCI CCNGG 5 cut(s) 186, 792, 887, 958, 968
BstSFI CTRYAG 2 cut(s) 748, 1410
BstUI CGCG 1 cut(s) 1198
BstV1I GCAGC 1 cut(s) 1396
BstX2I RGATCY 1 cut(s) 397
BstXI CCANNNNNNTGG 1 cut(s) 247
BstYI RGATCY 1 cut(s) 397
BsuRI GGCC 2 cut(s) 968, 1232
BtgI CCRYGG 2 cut(s) 393, 1196
BtsCI GGATG 2 cut(s) 235, 631
BtsI GCAGTG 1 cut(s) 1071
BtsIMutI CAGTG 6 cut(s) 553, 592, 630, 757, 1071, 1269
Cac8I GCNNGC 1 cut(s) 1003
CfoI GCGC 1 cut(s) 1295
Cfr10I RCCGGY 2 cut(s) 133, 304
Cfr13I GGNCC 1 cut(s) 1274
Cfr42I CCGCGG 1 cut(s) 1199
CsiI ACCWGGT 1 cut(s) 958
Csp6I GTAC 3 cut(s) 64, 529, 1333
CviAII CATG 5 cut(s) 18, 374, 779, 1093, 1442
CviQI GTAC 3 cut(s) 64, 529, 1333
DdeI CTNAG 6 cut(s) 317, 502, 702, 855, 1083, 1169
DinI GGCGCC 1 cut(s) 1294
DpnI GATC 6 cut(s) 312, 399, 591, 618, 1105, 1266
DpnII GATC 6 cut(s) 310, 397, 589, 616, 1103, 1264
EaeI YGGCCR 1 cut(s) 1230
Eam1104I CTCTTC 5 cut(s) 130, 674, 1158, 1342, 1429
EarI CTCTTC 5 cut(s) 130, 674, 1158, 1342, 1429
Eco130I CCWWGG 1 cut(s) 1281
Eco47I GGWCC 1 cut(s) 1274
Eco57I CTGAAG 1 cut(s) 498
EcoRI GAATTC 1 cut(s) 973
EcoRII CCWGG 2 cut(s) 958, 968
EcoT14I CCWWGG 1 cut(s) 1281
EgeI GGCGCC 1 cut(s) 1294
EheI GGCGCC 1 cut(s) 1294
ErhI CCWWGG 1 cut(s) 1281
FaeI CATG 5 cut(s) 21, 377, 782, 1096, 1445
FaqI GGGAC 3 cut(s) 557, 700, 1255
FatI CATG 5 cut(s) 17, 373, 778, 1092, 1441
FbaI TGATCA 1 cut(s) 1264
FblI GTMKAC 1 cut(s) 672
Fnu4HI GCNGC 3 cut(s) 46, 1196, 1410
FokI GGATG 2 cut(s) 242, 638
Fsp4HI GCNGC 3 cut(s) 46, 1196, 1410
FspBI CTAG 5 cut(s) 330, 498, 650, 1002, 1053
GlaI GCGC 1 cut(s) 1294
GluI GCNGC 3 cut(s) 46, 1196, 1410
GsaI CCCAGC 1 cut(s) 878
HaeII RGCGCY 1 cut(s) 1296
HaeIII GGCC 2 cut(s) 968, 1232
HapII CCGG 5 cut(s) 134, 188, 305, 794, 889
HhaI GCGC 1 cut(s) 1295
Hin1I GRCGYC 1 cut(s) 1293
Hin1II CATG 5 cut(s) 21, 377, 782, 1096, 1445
Hin6I GCGC 1 cut(s) 1293
HinP1I GCGC 1 cut(s) 1293
HincII GTYRAC 2 cut(s) 1155, 1354
HindII GTYRAC 2 cut(s) 1155, 1354
HinfI GANTC 8 cut(s) 52, 350, 389, 452, 674, 707, 1031, 1350
HpaI GTTAAC 1 cut(s) 1155
HpaII CCGG 5 cut(s) 134, 188, 305, 794, 889
HphI GGTGA 3 cut(s) 862, 1098, 1197
Hpy166II GTNNAC 3 cut(s) 673, 1155, 1354
Hpy188I TCNGA 6 cut(s) 426, 478, 712, 858, 907, 1030
Hpy188III TCNNGA 4 cut(s) 593, 620, 758, 1067
Hpy8I GTNNAC 3 cut(s) 673, 1155, 1354
Hpy99I CGWCG 1 cut(s) 934
HpyAV CCTTC 3 cut(s) 220, 250, 853
HpyCH4III ACNGT 8 cut(s) 548, 587, 752, 844, 1159, 1176, 1246, 1383
HpyCH4V TGCA 5 cut(s) 17, 380, 540, 719, 1412
HpyF10VI GCNNNNNNNGC 5 cut(s) 730, 739, 827, 998, 1415
HpyF3I CTNAG 6 cut(s) 317, 502, 702, 855, 1083, 1169
Hsp92I GRCGYC 1 cut(s) 1293
Hsp92II CATG 5 cut(s) 21, 377, 782, 1096, 1445
HspAI GCGC 1 cut(s) 1293
KasI GGCGCC 1 cut(s) 1292
KpnI GGTACC 1 cut(s) 532
Ksp22I TGATCA 1 cut(s) 1264
KspAI GTTAAC 1 cut(s) 1155
KspI CCGCGG 1 cut(s) 1199
Kzo9I GATC 6 cut(s) 310, 397, 589, 616, 1103, 1264
LguI GCTCTTC 1 cut(s) 1158
LmnI GCTCC 1 cut(s) 1251
Lsp1109I GCAGC 1 cut(s) 1396
LweI GCATC 2 cut(s) 988, 1405
MabI ACCWGGT 1 cut(s) 958
MaeI CTAG 5 cut(s) 330, 498, 650, 1002, 1053
MaeIII GTNAC 3 cut(s) 340, 548, 1203
MalI GATC 6 cut(s) 312, 399, 591, 618, 1105, 1266
MboI GATC 6 cut(s) 310, 397, 589, 616, 1103, 1264
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 1 cut(s) 757
MlsI TGGCCA 1 cut(s) 1232
MluNI TGGCCA 1 cut(s) 1232
Mly113I GGCGCC 1 cut(s) 1293
MlyI GAGTC 2 cut(s) 668, 1359
MmeI TCCRAC 1 cut(s) 1365
Mox20I TGGCCA 1 cut(s) 1232
MscI TGGCCA 1 cut(s) 1232
MseI TTAA 5 cut(s) 789, 918, 948, 1044, 1154
MslI CAYNNNNRTG 1 cut(s) 245
Msp20I TGGCCA 1 cut(s) 1232
MspA1I CMGCKG 2 cut(s) 878, 1198
MspCI CTTAAG 1 cut(s) 947
MspI CCGG 5 cut(s) 134, 188, 305, 794, 889
MspR9I CCNGG 5 cut(s) 188, 794, 889, 960, 970
MvaI CCWGG 2 cut(s) 960, 970
MvnI CGCG 1 cut(s) 1198
MwoI GCNNNNNNNGC 5 cut(s) 730, 739, 827, 998, 1415
NarI GGCGCC 1 cut(s) 1293
NciI CCSGG 3 cut(s) 188, 794, 889
NdeII GATC 6 cut(s) 310, 397, 589, 616, 1103, 1264
NheI GCTAGC 1 cut(s) 1001
NlaIII CATG 5 cut(s) 21, 377, 782, 1096, 1445
NlaIV GGNNCC 3 cut(s) 487, 530, 1294
NmeAIII GCCGAG 1 cut(s) 1094
NmuCI GTSAC 2 cut(s) 548, 1203
NspI RCATGY 3 cut(s) 21, 377, 1096
PciSI GCTCTTC 1 cut(s) 1158
PfeI GAWTC 6 cut(s) 52, 350, 389, 452, 707, 1031
PflFI GACNNNGTC 1 cut(s) 472
PflMI CCANNNNNTGG 1 cut(s) 988
PkrI GCNGC 3 cut(s) 47, 1197, 1411
PleI GAGTC 2 cut(s) 668, 1358
PluTI GGCGCC 1 cut(s) 1296
PpsI GAGTC 2 cut(s) 668, 1358
Psp6I CCWGG 2 cut(s) 958, 968
PspFI CCCAGC 1 cut(s) 874
PspGI CCWGG 2 cut(s) 958, 968
PspN4I GGNNCC 3 cut(s) 487, 530, 1294
PspPI GGNCC 1 cut(s) 1274
PstI CTGCAG 1 cut(s) 1414
PsuI RGATCY 1 cut(s) 397
PsyI GACNNNGTC 1 cut(s) 472
PvuII CAGCTG 1 cut(s) 878
RsaI GTAC 3 cut(s) 65, 530, 1334
RsaNI GTAC 3 cut(s) 64, 529, 1333
RseI CAYNNNNRTG 1 cut(s) 245
SacII CCGCGG 1 cut(s) 1199
SapI GCTCTTC 1 cut(s) 1158
SaqAI TTAA 5 cut(s) 789, 918, 948, 1044, 1154
SatI GCNGC 3 cut(s) 46, 1196, 1410
Sau3AI GATC 6 cut(s) 310, 397, 589, 616, 1103, 1264
Sau96I GGNCC 1 cut(s) 1274
SchI GAGTC 2 cut(s) 668, 1359
ScrFI CCNGG 5 cut(s) 188, 794, 889, 960, 970
SduI GDGCHC 1 cut(s) 757
SexAI ACCWGGT 1 cut(s) 958
SfaNI GCATC 2 cut(s) 988, 1405
SfcI CTRYAG 2 cut(s) 748, 1410
SfoI GGCGCC 1 cut(s) 1294
Sfr303I CCGCGG 1 cut(s) 1199
SgrBI CCGCGG 1 cut(s) 1199
SinI GGWCC 1 cut(s) 1274
SmiMI CAYNNNNRTG 1 cut(s) 245
SmlI CTYRAG 2 cut(s) 620, 947
SmoI CTYRAG 2 cut(s) 620, 947
SsiI CCGC 3 cut(s) 46, 1196, 1198
SspDI GGCGCC 1 cut(s) 1292
SspMI CTAG 5 cut(s) 330, 498, 650, 1002, 1053
StyD4I CCNGG 5 cut(s) 186, 792, 887, 958, 968
StyI CCWWGG 1 cut(s) 1281
TaaI ACNGT 8 cut(s) 548, 587, 752, 844, 1159, 1176, 1246, 1383
TaqI TCGA 4 cut(s) 408, 594, 677, 932
TatI WGTACW 1 cut(s) 1332
TauI GCSGC 2 cut(s) 48, 1198
TfiI GAWTC 6 cut(s) 52, 350, 389, 452, 707, 1031
Tru1I TTAA 5 cut(s) 789, 918, 948, 1044, 1154
Tru9I TTAA 5 cut(s) 789, 918, 948, 1044, 1154
TscAI CASTG 6 cut(s) 553, 592, 637, 757, 1078, 1276
TseFI GTSAC 2 cut(s) 548, 1203
TseI GCWGC 1 cut(s) 1409
Tsp45I GTSAC 2 cut(s) 548, 1203
TspGWI ACGGA 2 cut(s) 410, 1116
TspRI CASTG 6 cut(s) 553, 592, 637, 757, 1078, 1276
Tth111I GACNNNGTC 1 cut(s) 472
Van91I CCANNNNNTGG 1 cut(s) 988
Vha464I CTTAAG 1 cut(s) 947
VpaK11BI GGWCC 1 cut(s) 1274
XapI RAATTY 2 cut(s) 865, 973
XceI RCATGY 3 cut(s) 21, 377, 1096
XmiI GTMKAC 1 cut(s) 672
XspI CTAG 5 cut(s) 330, 498, 650, 1002, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.