Rmu_sc0005297.1_g000021

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005297.1
Physical Location & Seq
Reverse (-)
83357 .. 85294
1938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005297.1_g000021.1.cds

Sequence Viewer

Length: 1446 bp
atgggttgctttcttgcatgttttggttcttccaaagataaaagccggaggaatcaacagcggtacagggttcagcaccgagaacaaagatatacaagttttgagcctgttcaatctgctgtgtcttctgtgccggtttgggaaaaacccattagcccggaattgaaatatgaaaaacccatcagcccggaattgaaatgtgaaaaacccatcagcccagaattgaatgatgaaaaacccatcagcgtggaattgaaggaagaaaaacccagttgcccagaattggaagaagttaggtataagccagtggaacaactgagcttcattactagaaagaaagttacttttgattctaatgtccaaacctatgagcatgttggaatcaacgaatccacggatcttttattcgatagtaaagagtgtcagcaggaggaggggaaaaccttgaaagaatcaagccaatctaagacttcgtctgaagatggttccatcacttctagctcagggtcatgccctcctaatcataggtaccagaattgcagggacagtgacgatgaagatgaaccattagactatgatgaggacagtgatctcgatgatgatgatggtgatcttgaggatgacactgatgataatggggaactagagtatgaagatgaaattgtagactcgaagagagggacacaagtaatgactgaggattctgatagtgcaatgccgaaaaagccaactgggctaaactacagtgctcgtgataggagtggttatgttcatgctgtgcttaacccggttgaaaatctcacacaatggaaagctgtcaaagccaaaaagacaacagtaatgaagcctcagaaggagaatttcaccctggctgatgaaccccggatttcgttcagttcagagccaagttttaaggaagtatcgtcgagtttcaaatcacttaagaggcaatctggtcaggccaggaattctaaccaagaaatggcagttgatgctagcctgtcaaattggttgggttcatcagaagctacacctgtttacaagactagcacaatatctctggacactgctacacctgagaaaagcatgtcctacggatcaccacactcagcaacaagccacgaagatagaccaattttaggtgcattaacagttgaagagctgagacagttttcagcttcatcttcaccgcggaagtcacccagtagaagccctgatgagatggccataattgggactgttgggagctactggaatgatcacactggtcctgacaagggttctggcgcctcctcttacaaaggaataccaaacacgaccagcaagtacagagaggatagaaaagtcaactggcactctaccccatttgagacacggttggaaagagctttgaatagaggtgctgcagatgcttactcttcttctcgtacgcctcatggtttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

481

Amino Acids

53.81

Weight (kDa)

5.01

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 528
AccB1I GGYRCC 2 cut(s) 528, 1286
AccB7I CCANNNNNTGG 1 cut(s) 982
AccI GTMKAC 1 cut(s) 666
AccII CGCG 1 cut(s) 1192
AciI CCGC 3 cut(s) 61, 1190, 1192
AclWI GGATC 2 cut(s) 405, 1105
AcoI YGGCCR 1 cut(s) 1224
AcsI RAATTY 2 cut(s) 859, 967
AcuI CTGAAG 1 cut(s) 498
AcyI GRCGYC 1 cut(s) 1287
AfaI GTAC 4 cut(s) 65, 530, 1328, 1429
AfiI CCNNNNNNNGG 5 cut(s) 283, 982, 1139, 1233, 1277
AflII CTTAAG 1 cut(s) 941
AjnI CCWGG 2 cut(s) 867, 962
AluBI AGCT 8 cut(s) 321, 501, 815, 1028, 1162, 1178, 1248, 1388
AluI AGCT 8 cut(s) 321, 501, 815, 1028, 1162, 1178, 1248, 1388
Alw21I GWGCWC 1 cut(s) 751
Alw26I GTCTC 2 cut(s) 1159, 1364
AlwI GGATC 2 cut(s) 405, 1105
AoxI GGCC 2 cut(s) 960, 1224
ApeKI GCWGC 1 cut(s) 1403
ApoI RAATTY 2 cut(s) 859, 967
Asp718I GGTACC 1 cut(s) 528
AspLEI GCGC 1 cut(s) 1289
AspS9I GGNCC 1 cut(s) 1268
AsuC2I CCSGG 4 cut(s) 158, 188, 788, 883
AsuHPI GGTGA 5 cut(s) 620, 856, 1092, 1179, 1191
AsuNHI GCTAGC 1 cut(s) 995
AvaII GGWCC 1 cut(s) 1268
BalI TGGCCA 1 cut(s) 1226
BanI GGYRCC 2 cut(s) 528, 1286
BauI CACGAG 1 cut(s) 750
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 751
BbvI GCAGC 1 cut(s) 1390
BccI CCATC 7 cut(s) 188, 218, 248, 476, 497, 599, 1216
BciT130I CCWGG 2 cut(s) 869, 964
BclI TGATCA 1 cut(s) 1258
BcnI CCSGG 4 cut(s) 158, 188, 788, 883
BcoDI GTCTC 2 cut(s) 1159, 1364
BfaI CTAG 5 cut(s) 330, 498, 644, 996, 1047
BfmI CTRYAG 2 cut(s) 742, 1404
BfoI RGCGCY 1 cut(s) 1290
BfrI CTTAAG 1 cut(s) 941
BglI GCCNNNNNGGC 1 cut(s) 733
BisI GCNGC 1 cut(s) 1404
BlsI GCNGC 1 cut(s) 1405
Bme1390I CCNGG 6 cut(s) 158, 188, 788, 869, 883, 964
Bme18I GGWCC 1 cut(s) 1268
BmgT120I GGNCC 1 cut(s) 1268
BmiI GGNNCC 3 cut(s) 487, 530, 1288
BmrFI CCNGG 6 cut(s) 158, 188, 788, 869, 883, 964
BmrI ACTGGG 3 cut(s) 264, 741, 1197
BmsI GCATC 2 cut(s) 982, 1399
BmtI GCTAGC 1 cut(s) 999
BmuI ACTGGG 3 cut(s) 264, 741, 1197
BpiI GAAGAC 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 502
BpuEI CTTGAG 1 cut(s) 635
BpuMI CCSGG 4 cut(s) 158, 188, 788, 883
BsaBI GATNNNNATC 1 cut(s) 609
BsaHI GRCGYC 1 cut(s) 1287
BsaJI CCNNGG 4 cut(s) 393, 867, 881, 1190
Bsc4I CCNNNNNNNGG 5 cut(s) 283, 982, 1139, 1233, 1277
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 7 cut(s) 270, 305, 736, 1203, 1256, 1270, 1355
Bse3DI GCAATG 1 cut(s) 720
Bse8I GATNNNNATC 1 cut(s) 609
BseBI CCWGG 2 cut(s) 869, 964
BseDI CCNNGG 4 cut(s) 393, 867, 881, 1190
BseGI GGATG 1 cut(s) 625
BseJI GATNNNNATC 1 cut(s) 609
BseLI CCNNNNNNNGG 5 cut(s) 283, 982, 1139, 1233, 1277
BseMI GCAATG 1 cut(s) 720
BseMII CTCAG 7 cut(s) 308, 516, 687, 863, 1068, 1122, 1154
BseNI ACTGG 7 cut(s) 270, 305, 736, 1203, 1256, 1270, 1355
BseRI GAGGAG 2 cut(s) 446, 1282
BseXI GCAGC 1 cut(s) 1390
Bsh1236I CGCG 1 cut(s) 1192
BshFI GGCC 2 cut(s) 962, 1226
BshNI GGYRCC 2 cut(s) 528, 1286
BsiHKAI GWGCWC 1 cut(s) 751
BsiSI CCGG 6 cut(s) 46, 134, 158, 188, 788, 883
BsiWI CGTACG 1 cut(s) 1427
BslFI GGGAC 3 cut(s) 557, 694, 1249
BslI CCNNNNNNNGG 5 cut(s) 283, 982, 1139, 1233, 1277
BsmAI GTCTC 2 cut(s) 1159, 1364
BsmFI GGGAC 3 cut(s) 557, 694, 1249
BsnI GGCC 2 cut(s) 962, 1226
Bsp1286I GDGCHC 1 cut(s) 751
Bsp143I GATC 5 cut(s) 397, 589, 610, 1097, 1258
BspACI CCGC 3 cut(s) 61, 1190, 1192
BspANI GGCC 2 cut(s) 962, 1226
BspCNI CTCAG 7 cut(s) 309, 515, 688, 862, 1069, 1121, 1155
BspFNI CGCG 1 cut(s) 1192
BspLI GGNNCC 3 cut(s) 487, 530, 1288
BspMAI CTGCAG 1 cut(s) 1408
BspOI GCTAGC 1 cut(s) 999
BspPI GGATC 2 cut(s) 405, 1105
BspQI GCTCTTC 1 cut(s) 1152
BspT107I GGYRCC 2 cut(s) 528, 1286
BspTI CTTAAG 1 cut(s) 941
BsrDI GCAATG 1 cut(s) 720
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 7 cut(s) 270, 305, 736, 1203, 1256, 1270, 1355
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 4 cut(s) 393, 867, 881, 1190
BssMI GATC 5 cut(s) 397, 589, 610, 1097, 1258
BssNI GRCGYC 1 cut(s) 1287
BssSI CACGAG 1 cut(s) 750
Bst2BI CACGAG 1 cut(s) 750
Bst2UI CCWGG 2 cut(s) 869, 964
Bst4CI ACNGT 8 cut(s) 548, 587, 746, 838, 1153, 1170, 1240, 1377
Bst6I CTCTTC 3 cut(s) 668, 1152, 1423
BstACI GRCGYC 1 cut(s) 1287
BstAFI CTTAAG 1 cut(s) 941
BstAPI GCANNNNNTGC 1 cut(s) 992
BstC8I GCNNGC 1 cut(s) 997
BstDEI CTNAG 8 cut(s) 317, 465, 502, 696, 849, 1077, 1108, 1163
BstDSI CCRYGG 2 cut(s) 393, 1190
BstF5I GGATG 1 cut(s) 625
BstFNI CGCG 1 cut(s) 1192
BstH2I RGCGCY 1 cut(s) 1290
BstHHI GCGC 1 cut(s) 1289
BstKTI GATC 5 cut(s) 400, 592, 613, 1100, 1261
BstMAI GTCTC 2 cut(s) 1159, 1364
BstMBI GATC 5 cut(s) 397, 589, 610, 1097, 1258
BstMWI GCNNNNNNNGC 5 cut(s) 724, 733, 821, 992, 1409
BstNI CCWGG 2 cut(s) 869, 964
BstNSI RCATGY 3 cut(s) 21, 377, 1090
BstSCI CCNGG 6 cut(s) 156, 186, 786, 867, 881, 962
BstSFI CTRYAG 2 cut(s) 742, 1404
BstUI CGCG 1 cut(s) 1192
BstV1I GCAGC 1 cut(s) 1390
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 397
BstXI CCANNNNNNTGG 1 cut(s) 247
BstYI RGATCY 1 cut(s) 397
BsuRI GGCC 2 cut(s) 962, 1226
BtgI CCRYGG 2 cut(s) 393, 1190
BtsCI GGATG 1 cut(s) 625
BtsI GCAGTG 1 cut(s) 1065
BtsIMutI CAGTG 7 cut(s) 312, 553, 592, 624, 751, 1065, 1263
Cac8I GCNNGC 1 cut(s) 997
CfoI GCGC 1 cut(s) 1289
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 1268
Cfr42I CCGCGG 1 cut(s) 1193
Csp6I GTAC 4 cut(s) 64, 529, 1327, 1428
CviAII CATG 6 cut(s) 18, 374, 510, 773, 1087, 1436
CviQI GTAC 4 cut(s) 64, 529, 1327, 1428
DdeI CTNAG 8 cut(s) 317, 465, 502, 696, 849, 1077, 1108, 1163
DinI GGCGCC 1 cut(s) 1288
DpnI GATC 5 cut(s) 399, 591, 612, 1099, 1260
DpnII GATC 5 cut(s) 397, 589, 610, 1097, 1258
EaeI YGGCCR 1 cut(s) 1224
Eam1104I CTCTTC 3 cut(s) 668, 1152, 1423
EarI CTCTTC 3 cut(s) 668, 1152, 1423
Eco47I GGWCC 1 cut(s) 1268
Eco57I CTGAAG 1 cut(s) 498
EcoRI GAATTC 1 cut(s) 967
EcoRII CCWGG 2 cut(s) 867, 962
EgeI GGCGCC 1 cut(s) 1288
EheI GGCGCC 1 cut(s) 1288
FaeI CATG 6 cut(s) 21, 377, 513, 776, 1090, 1439
FaqI GGGAC 3 cut(s) 557, 694, 1249
FatI CATG 6 cut(s) 17, 373, 509, 772, 1086, 1435
FbaI TGATCA 1 cut(s) 1258
FblI GTMKAC 1 cut(s) 666
Fnu4HI GCNGC 1 cut(s) 1404
FokI GGATG 1 cut(s) 632
Fsp4HI GCNGC 1 cut(s) 1404
FspBI CTAG 5 cut(s) 330, 498, 644, 996, 1047
GlaI GCGC 1 cut(s) 1288
GluI GCNGC 1 cut(s) 1404
HaeII RGCGCY 1 cut(s) 1290
HaeIII GGCC 2 cut(s) 962, 1226
HapII CCGG 6 cut(s) 46, 134, 158, 188, 788, 883
HhaI GCGC 1 cut(s) 1289
Hin1I GRCGYC 1 cut(s) 1287
Hin1II CATG 6 cut(s) 21, 377, 513, 776, 1090, 1439
Hin6I GCGC 1 cut(s) 1287
HinP1I GCGC 1 cut(s) 1287
HincII GTYRAC 1 cut(s) 1348
HindII GTYRAC 1 cut(s) 1348
HinfI GANTC 7 cut(s) 52, 350, 381, 389, 452, 668, 701
HpaII CCGG 6 cut(s) 46, 134, 158, 188, 788, 883
HphI GGTGA 5 cut(s) 620, 856, 1092, 1179, 1191
Hpy166II GTNNAC 3 cut(s) 667, 1039, 1348
Hpy188I TCNGA 5 cut(s) 478, 706, 852, 901, 1024
Hpy188III TCNNGA 5 cut(s) 593, 614, 752, 1061, 1271
Hpy8I GTNNAC 3 cut(s) 667, 1039, 1348
Hpy99I CGWCG 1 cut(s) 928
HpyAV CCTTC 2 cut(s) 250, 847
HpyCH4III ACNGT 8 cut(s) 548, 587, 746, 838, 1153, 1170, 1240, 1377
HpyCH4V TGCA 5 cut(s) 17, 540, 713, 1145, 1406
HpyF10VI GCNNNNNNNGC 5 cut(s) 724, 733, 821, 992, 1409
HpyF3I CTNAG 8 cut(s) 317, 465, 502, 696, 849, 1077, 1108, 1163
Hsp92I GRCGYC 1 cut(s) 1287
Hsp92II CATG 6 cut(s) 21, 377, 513, 776, 1090, 1439
HspAI GCGC 1 cut(s) 1287
KasI GGCGCC 1 cut(s) 1286
KpnI GGTACC 1 cut(s) 532
Ksp22I TGATCA 1 cut(s) 1258
KspI CCGCGG 1 cut(s) 1193
Kzo9I GATC 5 cut(s) 397, 589, 610, 1097, 1258
LguI GCTCTTC 1 cut(s) 1152
LmnI GCTCC 1 cut(s) 1245
Lsp1109I GCAGC 1 cut(s) 1390
LweI GCATC 2 cut(s) 982, 1399
MaeI CTAG 5 cut(s) 330, 498, 644, 996, 1047
MaeIII GTNAC 3 cut(s) 340, 548, 1197
MalI GATC 5 cut(s) 399, 591, 612, 1099, 1260
MboI GATC 5 cut(s) 397, 589, 610, 1097, 1258
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 1 cut(s) 751
MlsI TGGCCA 1 cut(s) 1226
MluNI TGGCCA 1 cut(s) 1226
Mly113I GGCGCC 1 cut(s) 1287
MlyI GAGTC 1 cut(s) 662
MmeI TCCRAC 2 cut(s) 358, 1359
Mox20I TGGCCA 1 cut(s) 1226
MscI TGGCCA 1 cut(s) 1226
MseI TTAA 4 cut(s) 783, 912, 942, 1148
MslI CAYNNNNRTG 1 cut(s) 245
Msp20I TGGCCA 1 cut(s) 1226
MspA1I CMGCKG 2 cut(s) 61, 1192
MspCI CTTAAG 1 cut(s) 941
MspI CCGG 6 cut(s) 46, 134, 158, 188, 788, 883
MspR9I CCNGG 6 cut(s) 158, 188, 788, 869, 883, 964
MvaI CCWGG 2 cut(s) 869, 964
MvnI CGCG 1 cut(s) 1192
MwoI GCNNNNNNNGC 5 cut(s) 724, 733, 821, 992, 1409
NarI GGCGCC 1 cut(s) 1287
NciI CCSGG 4 cut(s) 158, 188, 788, 883
NdeII GATC 5 cut(s) 397, 589, 610, 1097, 1258
NheI GCTAGC 1 cut(s) 995
NlaIII CATG 6 cut(s) 21, 377, 513, 776, 1090, 1439
NlaIV GGNNCC 3 cut(s) 487, 530, 1288
NmuCI GTSAC 2 cut(s) 548, 1197
NspI RCATGY 3 cut(s) 21, 377, 1090
PciSI GCTCTTC 1 cut(s) 1152
PfeI GAWTC 6 cut(s) 52, 350, 381, 389, 452, 701
Pfl23II CGTACG 1 cut(s) 1427
PflFI GACNNNGTC 1 cut(s) 472
PflMI CCANNNNNTGG 1 cut(s) 982
PkrI GCNGC 1 cut(s) 1405
PleI GAGTC 1 cut(s) 662
PluTI GGCGCC 1 cut(s) 1290
PpsI GAGTC 1 cut(s) 662
Psp6I CCWGG 2 cut(s) 867, 962
PspGI CCWGG 2 cut(s) 867, 962
PspLI CGTACG 1 cut(s) 1427
PspN4I GGNNCC 3 cut(s) 487, 530, 1288
PspPI GGNCC 1 cut(s) 1268
PstI CTGCAG 1 cut(s) 1408
PsuI RGATCY 1 cut(s) 397
PsyI GACNNNGTC 1 cut(s) 472
RsaI GTAC 4 cut(s) 65, 530, 1328, 1429
RsaNI GTAC 4 cut(s) 64, 529, 1327, 1428
RseI CAYNNNNRTG 1 cut(s) 245
SacII CCGCGG 1 cut(s) 1193
SapI GCTCTTC 1 cut(s) 1152
SaqAI TTAA 4 cut(s) 783, 912, 942, 1148
SatI GCNGC 1 cut(s) 1404
Sau3AI GATC 5 cut(s) 397, 589, 610, 1097, 1258
Sau96I GGNCC 1 cut(s) 1268
SchI GAGTC 1 cut(s) 662
ScrFI CCNGG 6 cut(s) 158, 188, 788, 869, 883, 964
SduI GDGCHC 1 cut(s) 751
SfaNI GCATC 2 cut(s) 982, 1399
SfcI CTRYAG 2 cut(s) 742, 1404
SfoI GGCGCC 1 cut(s) 1288
Sfr303I CCGCGG 1 cut(s) 1193
SgrBI CCGCGG 1 cut(s) 1193
SinI GGWCC 1 cut(s) 1268
SmiMI CAYNNNNRTG 1 cut(s) 245
SmlI CTYRAG 2 cut(s) 614, 941
SmoI CTYRAG 2 cut(s) 614, 941
SsiI CCGC 3 cut(s) 61, 1190, 1192
SspDI GGCGCC 1 cut(s) 1286
SspMI CTAG 5 cut(s) 330, 498, 644, 996, 1047
StyD4I CCNGG 6 cut(s) 156, 186, 786, 867, 881, 962
TaaI ACNGT 8 cut(s) 548, 587, 746, 838, 1153, 1170, 1240, 1377
TaqI TCGA 4 cut(s) 408, 594, 671, 926
TatI WGTACW 1 cut(s) 1326
TfiI GAWTC 6 cut(s) 52, 350, 381, 389, 452, 701
Tru1I TTAA 4 cut(s) 783, 912, 942, 1148
Tru9I TTAA 4 cut(s) 783, 912, 942, 1148
TscAI CASTG 7 cut(s) 312, 553, 592, 631, 751, 1072, 1270
TseFI GTSAC 2 cut(s) 548, 1197
TseI GCWGC 1 cut(s) 1403
Tsp45I GTSAC 2 cut(s) 548, 1197
TspGWI ACGGA 2 cut(s) 410, 1110
TspRI CASTG 7 cut(s) 312, 553, 592, 631, 751, 1072, 1270
Tth111I GACNNNGTC 1 cut(s) 472
Van91I CCANNNNNTGG 1 cut(s) 982
Vha464I CTTAAG 1 cut(s) 941
VpaK11BI GGWCC 1 cut(s) 1268
XapI RAATTY 2 cut(s) 859, 967
XceI RCATGY 3 cut(s) 21, 377, 1090
XmiI GTMKAC 1 cut(s) 666
XspI CTAG 5 cut(s) 330, 498, 644, 996, 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.