Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003544

Physical Location & Seq

Genomic Coordinates Reverse (-)

49351231 .. 49376927

Gene Structure 25697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG293600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCAATTGATGCTAGCCTGTCAAATTGGTTGGGTTCATCAGAAGCTACACTTGTTAACAAGACTAGCACAATATCTCTGGACACATCTATGCCTGAGAAAAGCATGTCCTATGGATTACCACACTCAGTAACAAGCCACGAAGATAGACCAATTTTAGGTGCATTAATAGTTGAAGAGCTGAGACAGTTTTCAGCTTCATCTTCACCGCGGAAGTCACCCAGTAGAAGCCCCGATGAGATGGCCATAATTGGGACTGTTGGGAGCTACTGGAATGATCACACTGGTCCTGCCAAGGGTTCTAGCGCCTCCTCTTACAAAGGAATACCAAACACGACCAGCAAGTACAGAGAGGATAGAAGAGTCAACTGGCACTCTACCCCATTTGAGACACGGCTGGAAAGAGCTTTGAATAGAGGTGCTGCAGATGCTTACTCTTCTTCTCGTACGCCTCATGATGTTATCCAAGTTTTTGTGTTCCTTTTAACTTTCCAGATGTTAAAGCAAGTCAAAAGTCTAAATAGAGTAGGGGCCGCCGCAGATGGCCAGGGGATACCAGAGCGGTCCACCTCAGTTTCCAGACCCTCCACAAATGCAGTTTTCTCAGAGACCAATGGGGCCTCCTGGTCAGATGATGAGGGGTCCACCGCCTCCGCCGCGGCCTGGAATGCAAGGTCCACCGCCTCGTCCTGGGATGCCTCCTCCACCTGGTGGTGTTCCTTTGTATGGACAGCCTCGTGGCATGCCGCCTCCACCCAACTCTCAGAACCAGCAACAAAATCAGCAGCAACAGTGATTTGGCATAAACAGGTTATGATCGGAGGGTTTCCAAGTGGTGTTGAATGCCGGACATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

30.85

Weight (kDa)

7.06

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04030 AT1G04030 AT5G44040
fragaria_vesca	FvH4_2g20800 FvH4_2g20800
malus_domestica	MD05G1191900.v1.1 MD10G1178600.v1.1 MD10G1178700.v1.1
prunus_persica	Prupe.8G218000_v2.0.a1 Prupe.8G218000_v2.0.a1
pyrus_communis	pycom05g17880 pycom10g15500
rosa_chinensis	RchiOBHm_Chr0c16g0499811 RchiOBHm_Chr6g0287131 RchiOBHm_Chr6g0287181
rosa_laevigata	RLG00000012518
rosa_multiflora	Rmu_sc0005297.1_g000021
rosa_roxburghii	Rroxscaffold_7G00181680
rosa_rugosa	Rorug06G0185800 Rorug06G0185900 Rorug06G0185900
rosa_samantha	Rh6AG297200 Rh6BG302400 Rh6CG307500 Rh6CG309500 Rh6CG309800 Rh6CG310000 Rh6CG310400 Rh6CG310600 Rh6DG293100 Rh6DG293400 Rh6DG293600 Rh6DG294000 Rh6DG294300
rosa_wichuraiana	Rw6G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	711
AccBSI	CCGCTC	1 cut(s)	562
AccII	CGCG	2 cut(s)	211, 659
AcoI	YGGCCR	2 cut(s)	243, 544
AdeI	CACNNNGTG	1 cut(s)	711
AfaI	GTAC	2 cut(s)	347, 448
AfiI	CCNNNNNNNGG	8 cut(s)	158, 252, 296, 663, 690, 708, 711, 726
AgsI	TTSAA	3 cut(s)	176, 412, 842
AjnI	CCWGG	5 cut(s)	546, 623, 662, 689, 707
AluBI	AGCT	5 cut(s)	47, 181, 197, 267, 407
AluI	AGCT	5 cut(s)	47, 181, 197, 267, 407
Alw26I	GTCTC	3 cut(s)	178, 383, 602
AoxI	GGCC	5 cut(s)	243, 531, 544, 618, 660
ApeKI	GCWGC	2 cut(s)	422, 785
AseI	ATTAAT	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	6 cut(s)	287, 531, 564, 618, 642, 675
AsuHPI	GGTGA	2 cut(s)	198, 210
AsuNHI	GCTAGC	1 cut(s)	14
AvaII	GGWCC	4 cut(s)	287, 564, 642, 675
BalI	TGGCCA	2 cut(s)	245, 546
BauI	CACGAG	1 cut(s)	736
BbvI	GCAGC	2 cut(s)	409, 797
BccI	CCATC	2 cut(s)	235, 536
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	5 cut(s)	548, 625, 664, 691, 709
BciVI	GTATCC	1 cut(s)	546
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	3 cut(s)	178, 383, 602
BfaI	CTAG	3 cut(s)	15, 66, 303
BfmI	CTRYAG	1 cut(s)	423
BfoI	RGCGCY	1 cut(s)	309
BfuI	GTATCC	1 cut(s)	546
BisI	GCNGC	7 cut(s)	423, 534, 537, 657, 660, 747, 786
BlsI	GCNGC	7 cut(s)	424, 535, 538, 658, 661, 748, 787
Bme1390I	CCNGG	5 cut(s)	548, 625, 664, 691, 709
Bme18I	GGWCC	4 cut(s)	287, 564, 642, 675
BmgT120I	GGNCC	6 cut(s)	287, 531, 564, 618, 642, 675
BmiI	GGNNCC	3 cut(s)	532, 619, 643
BmrFI	CCNGG	5 cut(s)	548, 625, 664, 691, 709
BmrI	ACTGGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	418, 685
BmtI	GCTAGC	1 cut(s)	18
BmuI	ACTGGG	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	5 cut(s)	209, 294, 547, 657, 690
Bsc4I	CCNNNNNNNGG	8 cut(s)	158, 252, 296, 663, 690, 708, 711, 726
Bse1I	ACTGG	4 cut(s)	222, 275, 289, 374
BseBI	CCWGG	5 cut(s)	548, 625, 664, 691, 709
BseDI	CCNNGG	5 cut(s)	209, 294, 547, 657, 690
BseGI	GGATG	1 cut(s)	700
BseLI	CCNNNNNNNGG	8 cut(s)	158, 252, 296, 663, 690, 708, 711, 726
BseMII	CTCAG	6 cut(s)	87, 141, 173, 585, 618, 777
BseNI	ACTGG	4 cut(s)	222, 275, 289, 374
BseRI	GAGGAG	2 cut(s)	301, 691
BseXI	GCAGC	2 cut(s)	409, 797
Bsh1236I	CGCG	2 cut(s)	211, 659
BshFI	GGCC	5 cut(s)	245, 533, 546, 620, 662
BsiSI	CCGG	1 cut(s)	847
BsiWI	CGTACG	1 cut(s)	446
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	8 cut(s)	158, 252, 296, 663, 690, 708, 711, 726
BsmAI	GTCTC	3 cut(s)	178, 383, 602
BsmFI	GGGAC	1 cut(s)	268
BsmI	GAATGC	2 cut(s)	673, 848
BsnI	GGCC	5 cut(s)	245, 533, 546, 620, 662
Bso31I	GGTCTC	1 cut(s)	602
Bsp143I	GATC	2 cut(s)	277, 816
BspANI	GGCC	5 cut(s)	245, 533, 546, 620, 662
BspCNI	CTCAG	6 cut(s)	88, 140, 174, 584, 617, 776
BspFNI	CGCG	2 cut(s)	211, 659
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	3 cut(s)	532, 619, 643
BspMAI	CTGCAG	1 cut(s)	427
BspOI	GCTAGC	1 cut(s)	18
BspQI	GCTCTTC	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	602
BsrBI	CCGCTC	1 cut(s)	562
BsrI	ACTGG	4 cut(s)	222, 275, 289, 374
BssECI	CCNNGG	5 cut(s)	209, 294, 547, 657, 690
BssMI	GATC	2 cut(s)	277, 816
BssSI	CACGAG	1 cut(s)	736
BssT1I	CCWWGG	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	736
Bst2UI	CCWGG	5 cut(s)	548, 625, 664, 691, 709
Bst4CI	ACNGT	3 cut(s)	189, 259, 793
Bst6I	CTCTTC	3 cut(s)	171, 355, 442
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	16, 744
BstDEI	CTNAG	6 cut(s)	96, 127, 182, 571, 604, 763
BstDSI	CCRYGG	2 cut(s)	209, 657
BstF5I	GGATG	1 cut(s)	700
BstFNI	CGCG	2 cut(s)	211, 659
BstH2I	RGCGCY	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	2 cut(s)	280, 819
BstMAI	GTCTC	3 cut(s)	178, 383, 602
BstMBI	GATC	2 cut(s)	277, 816
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 428, 656, 668
BstNI	CCWGG	5 cut(s)	548, 625, 664, 691, 709
BstNSI	RCATGY	2 cut(s)	109, 746
BstSCI	CCNGG	5 cut(s)	546, 623, 662, 689, 707
BstSFI	CTRYAG	1 cut(s)	423
BstUI	CGCG	2 cut(s)	211, 659
BstV1I	GCAGC	2 cut(s)	409, 797
BsuI	GTATCC	1 cut(s)	546
BsuRI	GGCC	5 cut(s)	245, 533, 546, 620, 662
BtgI	CCRYGG	2 cut(s)	209, 657
BtsCI	GGATG	1 cut(s)	700
BtsIMutI	CAGTG	2 cut(s)	282, 798
Cac8I	GCNNGC	2 cut(s)	16, 744
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	1 cut(s)	308
Cfr13I	GGNCC	6 cut(s)	287, 531, 564, 618, 642, 675
Cfr42I	CCGCGG	2 cut(s)	212, 660
CsiI	ACCWGGT	1 cut(s)	707
Csp6I	GTAC	2 cut(s)	346, 447
CviAII	CATG	3 cut(s)	106, 455, 743
CviQI	GTAC	2 cut(s)	346, 447
DdeI	CTNAG	6 cut(s)	96, 127, 182, 571, 604, 763
DpnI	GATC	2 cut(s)	279, 818
DpnII	GATC	2 cut(s)	277, 816
DraIII	CACNNNGTG	1 cut(s)	711
EaeI	YGGCCR	2 cut(s)	243, 544
Eam1104I	CTCTTC	3 cut(s)	171, 355, 442
EarI	CTCTTC	3 cut(s)	171, 355, 442
EciI	GGCGGA	1 cut(s)	643
Eco130I	CCWWGG	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	602
Eco47I	GGWCC	4 cut(s)	287, 564, 642, 675
EcoO109I	RGGNCCY	1 cut(s)	618
EcoRII	CCWGG	5 cut(s)	546, 623, 662, 689, 707
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	3 cut(s)	109, 458, 746
FaiI	YATR	9 cut(s)	92, 107, 114, 248, 456, 727, 744, 804, 815
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	3 cut(s)	105, 454, 742
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	7 cut(s)	423, 534, 537, 657, 660, 747, 786
FokI	GGATG	1 cut(s)	707
Fsp4HI	GCNGC	7 cut(s)	423, 534, 537, 657, 660, 747, 786
FspBI	CTAG	3 cut(s)	15, 66, 303
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	7 cut(s)	423, 534, 537, 657, 660, 747, 786
HaeII	RGCGCY	1 cut(s)	309
HaeIII	GGCC	5 cut(s)	245, 533, 546, 620, 662
HapII	CCGG	1 cut(s)	847
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	3 cut(s)	109, 458, 746
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	2 cut(s)	58, 367
HindII	GTYRAC	2 cut(s)	58, 367
HinfI	GANTC	1 cut(s)	363
HpaI	GTTAAC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	847
HphI	GGTGA	2 cut(s)	198, 210
Hpy166II	GTNNAC	5 cut(s)	58, 367, 567, 645, 678
Hpy188I	TCNGA	5 cut(s)	43, 607, 631, 766, 821
Hpy188III	TCNNGA	4 cut(s)	80, 455, 493, 579
Hpy8I	GTNNAC	5 cut(s)	58, 367, 567, 645, 678
HpyCH4III	ACNGT	3 cut(s)	189, 259, 793
HpyCH4V	TGCA	4 cut(s)	164, 425, 596, 671
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 428, 656, 668
HpyF3I	CTNAG	6 cut(s)	96, 127, 182, 571, 604, 763
Hsp92II	CATG	3 cut(s)	109, 458, 746
HspAI	GCGC	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	277
KspAI	GTTAAC	1 cut(s)	58
KspI	CCGCGG	2 cut(s)	212, 660
Kzo9I	GATC	2 cut(s)	277, 816
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	264
Lsp1109I	GCAGC	2 cut(s)	409, 797
LweI	GCATC	2 cut(s)	418, 685
MabI	ACCWGGT	1 cut(s)	707
MaeI	CTAG	3 cut(s)	15, 66, 303
MaeIII	GTNAC	2 cut(s)	130, 216
MalI	GATC	2 cut(s)	279, 818
MbiI	CCGCTC	1 cut(s)	562
MboI	GATC	2 cut(s)	277, 816
MboII	GAAGA	6 cut(s)	155, 188, 195, 372, 429, 432
MfeI	CAATTG	1 cut(s)	6
MlsI	TGGCCA	2 cut(s)	245, 546
MluCI	AATT	4 cut(s)	6, 25, 153, 249
MluNI	TGGCCA	2 cut(s)	245, 546
MlyI	GAGTC	1 cut(s)	372
Mox20I	TGGCCA	2 cut(s)	245, 546
MscI	TGGCCA	2 cut(s)	245, 546
MseI	TTAA	4 cut(s)	57, 167, 485, 500
MslI	CAYNNNNRTG	1 cut(s)	89
Msp20I	TGGCCA	2 cut(s)	245, 546
MspA1I	CMGCKG	2 cut(s)	211, 659
MspI	CCGG	1 cut(s)	847
MspR9I	CCNGG	5 cut(s)	548, 625, 664, 691, 709
MunI	CAATTG	1 cut(s)	6
Mva1269I	GAATGC	2 cut(s)	673, 848
MvaI	CCWGG	5 cut(s)	548, 625, 664, 691, 709
MvnI	CGCG	2 cut(s)	211, 659
MwoI	GCNNNNNNNGC	4 cut(s)	11, 428, 656, 668
NdeII	GATC	2 cut(s)	277, 816
NheI	GCTAGC	1 cut(s)	14
NlaIII	CATG	3 cut(s)	109, 458, 746
NlaIV	GGNNCC	3 cut(s)	532, 619, 643
NmuCI	GTSAC	1 cut(s)	216
NspI	RCATGY	2 cut(s)	109, 746
PaeI	GCATGC	1 cut(s)	746
PagI	TCATGA	1 cut(s)	454
PciSI	GCTCTTC	1 cut(s)	171
PctI	GAATGC	2 cut(s)	673, 848
Pfl23II	CGTACG	1 cut(s)	446
PflMI	CCANNNNNTGG	1 cut(s)	711
PkrI	GCNGC	7 cut(s)	424, 535, 538, 658, 661, 748, 787
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
PshBI	ATTAAT	1 cut(s)	167
Psp6I	CCWGG	5 cut(s)	546, 623, 662, 689, 707
PspGI	CCWGG	5 cut(s)	546, 623, 662, 689, 707
PspLI	CGTACG	1 cut(s)	446
PspN4I	GGNNCC	3 cut(s)	532, 619, 643
PspPI	GGNCC	6 cut(s)	287, 531, 564, 618, 642, 675
PstI	CTGCAG	1 cut(s)	427
RsaI	GTAC	2 cut(s)	347, 448
RsaNI	GTAC	2 cut(s)	346, 447
RseI	CAYNNNNRTG	1 cut(s)	89
SacII	CCGCGG	2 cut(s)	212, 660
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	4 cut(s)	57, 167, 485, 500
SatI	GCNGC	7 cut(s)	423, 534, 537, 657, 660, 747, 786
Sau3AI	GATC	2 cut(s)	277, 816
Sau96I	GGNCC	6 cut(s)	287, 531, 564, 618, 642, 675
SchI	GAGTC	1 cut(s)	372
ScrFI	CCNGG	5 cut(s)	548, 625, 664, 691, 709
SexAI	ACCWGGT	1 cut(s)	707
SfaNI	GCATC	2 cut(s)	418, 685
SfcI	CTRYAG	1 cut(s)	423
Sfr303I	CCGCGG	2 cut(s)	212, 660
SgrBI	CCGCGG	2 cut(s)	212, 660
SinI	GGWCC	4 cut(s)	287, 564, 642, 675
SmiMI	CAYNNNNRTG	1 cut(s)	89
SphI	GCATGC	1 cut(s)	746
Sse9I	AATT	4 cut(s)	6, 25, 153, 249
SspMI	CTAG	3 cut(s)	15, 66, 303
StyD4I	CCNGG	5 cut(s)	546, 623, 662, 689, 707
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	3 cut(s)	189, 259, 793
TasI	AATT	4 cut(s)	6, 25, 153, 249
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	5 cut(s)	536, 539, 659, 662, 749
Tru1I	TTAA	4 cut(s)	57, 167, 485, 500
Tru9I	TTAA	4 cut(s)	57, 167, 485, 500
TscAI	CASTG	2 cut(s)	289, 798
TseFI	GTSAC	1 cut(s)	216
TseI	GCWGC	2 cut(s)	422, 785
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	2 cut(s)	27, 189
TspRI	CASTG	2 cut(s)	289, 798
Van91I	CCANNNNNTGG	1 cut(s)	711
VpaK11BI	GGWCC	4 cut(s)	287, 564, 642, 675
VspI	ATTAAT	1 cut(s)	167
XceI	RCATGY	2 cut(s)	109, 746
XspI	CTAG	3 cut(s)	15, 66, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.