Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003544

Physical Location & Seq

Genomic Coordinates Reverse (-)

17380246 .. 17382894

Gene Structure 2649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g20800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGGGTTGCTTTCTTGCTTGTTTTGGTTCTTCCAAAGATAAGAACCGCCGGAATCAACAGCAGAGGTACAGGGTTCAGAACCGGGAACAAAGATACACAAGTTTTGAGCCTGTTCAATCTGCTGTGTCTGATGTGCCTGTTTGGGAGAAACCCATCACTCCTGATTTGAAATGTGAGGAACCCATCAATCCTGAATTGAAATGTGAGAAACCCATCAGCCCAGAATTGAAAGATGAGAAACCCATCAGCCCAGAATTGAAAGAAGAAGAACCCAGTAGTCCAGAATTGGAAGTTGTAATCAGTCCAGAAGTTAGGGATAAGCCAGTGGAACAACTGAGCTGCATTGCTAGAAAGAAGGTGACTTTTGATTCTAATGTGCAAACCTATGAGCATGTTGCAATCAACGAATCCACGGATATTTTACTTGATAGTAAAGAGTGTCAGAAGGAGGAGGGGGAAACCTTGAAAGAATCAAGCCTGTCGAAGACTTCGTCTGAAGATGATTCCATCACTTCTAGCTCAGGGTCGTATCCTCCTAATCATAGGTACCAGAATTGCAGGGACAGTGATGATGAAGATGAACCATTAGACTATGACGAGGACAGTGATCTTGATGATGATGATGATCTTGAGGACGAAACTGATGATGATGAAATTGTAGACTCGAAGAGAGGGACACAAGTAATGACTGAGGATGCTGACAGTCCAATTCCAAAAAAGCCAACTGGGCTTAACTACAGTGTTCGTGATAGGAGTGGTTATGTTCATGCTGTGCTTAACCCAGTTGAAAATATCACACAATGGAAAGCTGTCAAAGCAAAAAAGACAACCGTAATGAAACCTCAGAAGGAGAATTTCACCCTGGATGATGAACCCCGGATTTCATTCAGTTCAGAGCCAAGTATCAAGGAAGTATCGTCGAGTTTCAAATCATGTAAGAGGCAATCTGGTCAGGCGAGGAATTCTAACCATGAAATGGCAGTTGATGCTAGCCTGTCAAATTGGTTGGGTTCATCAGAAGCTACACCTGTTAAAAAGACTAGCACATCTCTGGGCGCTTCTACGCCTGAGAAAAGCATGTCCTACGGATCACCACACTCAGCAACAAGCCACGAAGATAGACCAATTTTAGGTGCATTAACAGTTGAAGAGCTGAGACAGTTTTCAGCTTCATCTTCACCGCGGAAATCACCCAGCAGAAGCCCTGATGAGATGGCCATAATTGGGACTGTTGGGAGCTACTGGAATGATCAGACCGATCCTGCCAAGGGTTCTGGTGCCTCCTCTTACAAAGGAATACCAAACACAACCAGCAAGTACAGAGAGGATAGAAGAGTCAACTGGCACTCTACCCCATTCGAGACACGATTAGAAAGAGCTTTGAATAGAGGTGCTGCAGATGCCTACTCATCTTCTCGTACGCCTCATGGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

479

Amino Acids

53.35

Weight (kDa)

4.89

Isoelectric Point (pI)

54.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04030 AT1G04030 AT5G44040
fragaria_vesca	FvH4_2g20800 FvH4_2g20800
malus_domestica	MD05G1191900.v1.1 MD10G1178600.v1.1 MD10G1178700.v1.1
prunus_persica	Prupe.8G218000_v2.0.a1 Prupe.8G218000_v2.0.a1
pyrus_communis	pycom05g17880 pycom10g15500
rosa_chinensis	RchiOBHm_Chr0c16g0499811 RchiOBHm_Chr6g0287131 RchiOBHm_Chr6g0287181
rosa_laevigata	RLG00000012518
rosa_multiflora	Rmu_sc0005297.1_g000021
rosa_roxburghii	Rroxscaffold_7G00181680
rosa_rugosa	Rorug06G0185800 Rorug06G0185900 Rorug06G0185900
rosa_samantha	Rh6AG297200 Rh6BG302400 Rh6CG307500 Rh6CG309500 Rh6CG309800 Rh6CG310000 Rh6CG310400 Rh6CG310600 Rh6DG293100 Rh6DG293400 Rh6DG293600 Rh6DG294000 Rh6DG294300
rosa_wichuraiana	Rw6G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	546
AccB1I	GGYRCC	2 cut(s)	546, 1277
AccB7I	CCANNNNNTGG	1 cut(s)	976
AccI	GTMKAC	1 cut(s)	660
AccII	CGCG	1 cut(s)	1183
AciI	CCGC	3 cut(s)	46, 1181, 1183
AclWI	GGATC	2 cut(s)	1096, 1253
AcoI	YGGCCR	1 cut(s)	1215
AcsI	RAATTY	2 cut(s)	853, 961
AcuI	CTGAAG	1 cut(s)	516
AfaI	GTAC	4 cut(s)	68, 548, 1319, 1420
AfiI	CCNNNNNNNGG	4 cut(s)	976, 1130, 1224, 1268
AjnI	CCWGG	1 cut(s)	861
AluBI	AGCT	8 cut(s)	339, 519, 809, 1022, 1153, 1169, 1239, 1379
AluI	AGCT	8 cut(s)	339, 519, 809, 1022, 1153, 1169, 1239, 1379
Alw26I	GTCTC	2 cut(s)	1150, 1355
AlwI	GGATC	2 cut(s)	1096, 1253
AoxI	GGCC	1 cut(s)	1215
ApeKI	GCWGC	2 cut(s)	339, 1394
ApoI	RAATTY	2 cut(s)	853, 961
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
Asp718I	GGTACC	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	1058
AsuC2I	CCSGG	2 cut(s)	83, 877
AsuHPI	GGTGA	5 cut(s)	370, 850, 1083, 1170, 1182
AsuNHI	GCTAGC	1 cut(s)	989
BaeI	ACNNNNGTAYC	2 cut(s)	85, 118
BalI	TGGCCA	1 cut(s)	1217
BanI	GGYRCC	2 cut(s)	546, 1277
BbsI	GAAGAC	1 cut(s)	491
BbvI	GCAGC	2 cut(s)	326, 1381
BccI	CCATC	6 cut(s)	161, 191, 221, 251, 515, 1207
BciT130I	CCWGG	1 cut(s)	863
BciVI	GTATCC	1 cut(s)	540
BclI	TGATCA	1 cut(s)	1249
BcnI	CCSGG	2 cut(s)	83, 877
BcoDI	GTCTC	2 cut(s)	1150, 1355
BfaI	CTAG	4 cut(s)	348, 516, 990, 1041
BfmI	CTRYAG	2 cut(s)	736, 1395
BfoI	RGCGCY	1 cut(s)	1059
BfuI	GTATCC	1 cut(s)	540
BglI	GCCNNNNNGGC	1 cut(s)	727
BisI	GCNGC	2 cut(s)	340, 1395
BlsI	GCNGC	2 cut(s)	341, 1396
Bme1390I	CCNGG	3 cut(s)	83, 863, 877
BmiI	GGNNCC	3 cut(s)	180, 548, 1279
BmrFI	CCNGG	3 cut(s)	83, 863, 877
BmrI	ACTGGG	3 cut(s)	267, 735, 776
BmsI	GCATC	3 cut(s)	685, 976, 1390
BmtI	GCTAGC	1 cut(s)	993
BmuI	ACTGGG	3 cut(s)	267, 735, 776
BpiI	GAAGAC	1 cut(s)	491
Bpu10I	CCTNAGC	1 cut(s)	520
BpuEI	CTTGAG	1 cut(s)	650
BpuMI	CCSGG	2 cut(s)	83, 877
BsaBI	GATNNNNATC	1 cut(s)	624
BsaJI	CCNNGG	5 cut(s)	411, 861, 875, 1181, 1266
Bsc4I	CCNNNNNNNGG	4 cut(s)	976, 1130, 1224, 1268
Bse1I	ACTGG	6 cut(s)	273, 323, 730, 782, 1247, 1346
Bse3DI	GCAATG	1 cut(s)	342
Bse8I	GATNNNNATC	1 cut(s)	624
BseBI	CCWGG	1 cut(s)	863
BseDI	CCNNGG	5 cut(s)	411, 861, 875, 1181, 1266
BseGI	GGATG	2 cut(s)	700, 871
BseJI	GATNNNNATC	1 cut(s)	624
BseLI	CCNNNNNNNGG	4 cut(s)	976, 1130, 1224, 1268
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	7 cut(s)	326, 534, 681, 857, 1059, 1113, 1145
BseNI	ACTGG	6 cut(s)	273, 323, 730, 782, 1247, 1346
BseRI	GAGGAG	2 cut(s)	464, 1273
BseXI	GCAGC	2 cut(s)	326, 1381
BseYI	CCCAGC	1 cut(s)	1193
Bsh1236I	CGCG	1 cut(s)	1183
BshFI	GGCC	1 cut(s)	1217
BshNI	GGYRCC	2 cut(s)	546, 1277
BsiSI	CCGG	3 cut(s)	49, 82, 877
BsiWI	CGTACG	1 cut(s)	1418
BslFI	GGGAC	3 cut(s)	575, 688, 1240
BslI	CCNNNNNNNGG	4 cut(s)	976, 1130, 1224, 1268
BsmAI	GTCTC	2 cut(s)	1150, 1355
BsmFI	GGGAC	3 cut(s)	575, 688, 1240
BsnI	GGCC	1 cut(s)	1217
Bsp143I	GATC	5 cut(s)	607, 625, 1088, 1249, 1258
BspACI	CCGC	3 cut(s)	46, 1181, 1183
BspANI	GGCC	1 cut(s)	1217
BspCNI	CTCAG	7 cut(s)	327, 533, 682, 856, 1060, 1112, 1146
BspFNI	CGCG	1 cut(s)	1183
BspLI	GGNNCC	3 cut(s)	180, 548, 1279
BspMAI	CTGCAG	1 cut(s)	1399
BspOI	GCTAGC	1 cut(s)	993
BspPI	GGATC	2 cut(s)	1096, 1253
BspQI	GCTCTTC	1 cut(s)	1143
BspT107I	GGYRCC	2 cut(s)	546, 1277
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	6 cut(s)	273, 323, 730, 782, 1247, 1346
BssECI	CCNNGG	5 cut(s)	411, 861, 875, 1181, 1266
BssMI	GATC	5 cut(s)	607, 625, 1088, 1249, 1258
BssT1I	CCWWGG	1 cut(s)	1266
Bst2UI	CCWGG	1 cut(s)	863
Bst4CI	ACNGT	8 cut(s)	566, 605, 704, 740, 832, 1144, 1161, 1231
Bst6I	CTCTTC	3 cut(s)	662, 1143, 1327
BstAPI	GCANNNNNTGC	1 cut(s)	986
BstC8I	GCNNGC	1 cut(s)	991
BstDEI	CTNAG	7 cut(s)	335, 520, 690, 843, 1068, 1099, 1154
BstDSI	CCRYGG	2 cut(s)	411, 1181
BstF5I	GGATG	2 cut(s)	700, 871
BstFNI	CGCG	1 cut(s)	1183
BstH2I	RGCGCY	1 cut(s)	1059
BstHHI	GCGC	1 cut(s)	1058
BstKTI	GATC	5 cut(s)	610, 628, 1091, 1252, 1261
BstMAI	GTCTC	2 cut(s)	1150, 1355
BstMBI	GATC	5 cut(s)	607, 625, 1088, 1249, 1258
BstMWI	GCNNNNNNNGC	4 cut(s)	727, 815, 986, 1400
BstNI	CCWGG	1 cut(s)	863
BstNSI	RCATGY	2 cut(s)	395, 1081
BstSCI	CCNGG	3 cut(s)	81, 861, 875
BstSFI	CTRYAG	2 cut(s)	736, 1395
BstUI	CGCG	1 cut(s)	1183
BstV1I	GCAGC	2 cut(s)	326, 1381
BstV2I	GAAGAC	1 cut(s)	491
BsuI	GTATCC	1 cut(s)	540
BsuRI	GGCC	1 cut(s)	1217
BtgI	CCRYGG	2 cut(s)	411, 1181
BtsCI	GGATG	2 cut(s)	700, 871
BtsIMutI	CAGTG	4 cut(s)	330, 571, 610, 745
Cac8I	GCNNGC	1 cut(s)	991
CfoI	GCGC	1 cut(s)	1058
Cfr42I	CCGCGG	1 cut(s)	1184
Csp6I	GTAC	4 cut(s)	67, 547, 1318, 1419
CviAII	CATG	6 cut(s)	392, 767, 933, 971, 1078, 1427
CviQI	GTAC	4 cut(s)	67, 547, 1318, 1419
DdeI	CTNAG	7 cut(s)	335, 520, 690, 843, 1068, 1099, 1154
DpnI	GATC	5 cut(s)	609, 627, 1090, 1251, 1260
DpnII	GATC	5 cut(s)	607, 625, 1088, 1249, 1258
EaeI	YGGCCR	1 cut(s)	1215
Eam1104I	CTCTTC	3 cut(s)	662, 1143, 1327
EarI	CTCTTC	3 cut(s)	662, 1143, 1327
Eco130I	CCWWGG	1 cut(s)	1266
Eco57I	CTGAAG	1 cut(s)	516
EcoRI	GAATTC	1 cut(s)	961
EcoRII	CCWGG	1 cut(s)	861
EcoT14I	CCWWGG	1 cut(s)	1266
ErhI	CCWWGG	1 cut(s)	1266
FaeI	CATG	6 cut(s)	395, 770, 936, 974, 1081, 1430
FaqI	GGGAC	3 cut(s)	575, 688, 1240
FatI	CATG	6 cut(s)	391, 766, 932, 970, 1077, 1426
FbaI	TGATCA	1 cut(s)	1249
FblI	GTMKAC	1 cut(s)	660
Fnu4HI	GCNGC	2 cut(s)	340, 1395
FokI	GGATG	2 cut(s)	707, 878
Fsp4HI	GCNGC	2 cut(s)	340, 1395
FspBI	CTAG	4 cut(s)	348, 516, 990, 1041
GlaI	GCGC	1 cut(s)	1057
GluI	GCNGC	2 cut(s)	340, 1395
GsaI	CCCAGC	1 cut(s)	1197
HaeII	RGCGCY	1 cut(s)	1059
HaeIII	GGCC	1 cut(s)	1217
HapII	CCGG	3 cut(s)	49, 82, 877
HhaI	GCGC	1 cut(s)	1058
Hin1II	CATG	6 cut(s)	395, 770, 936, 974, 1081, 1430
Hin6I	GCGC	1 cut(s)	1056
HinP1I	GCGC	1 cut(s)	1056
HincII	GTYRAC	1 cut(s)	1339
HindII	GTYRAC	1 cut(s)	1339
HinfI	GANTC	7 cut(s)	52, 368, 407, 470, 503, 662, 1335
HpaII	CCGG	3 cut(s)	49, 82, 877
HphI	GGTGA	5 cut(s)	370, 850, 1083, 1170, 1182
Hpy166II	GTNNAC	2 cut(s)	661, 1339
Hpy188I	TCNGA	8 cut(s)	78, 130, 444, 496, 846, 895, 1018, 1254
Hpy188III	TCNNGA	8 cut(s)	161, 191, 281, 305, 611, 629, 746, 1360
Hpy8I	GTNNAC	2 cut(s)	661, 1339
Hpy99I	CGWCG	1 cut(s)	922
HpyAV	CCTTC	3 cut(s)	349, 439, 841
HpyCH4III	ACNGT	8 cut(s)	566, 605, 704, 740, 832, 1144, 1161, 1231
HpyCH4V	TGCA	6 cut(s)	342, 379, 398, 558, 1136, 1397
HpyF10VI	GCNNNNNNNGC	4 cut(s)	727, 815, 986, 1400
HpyF3I	CTNAG	7 cut(s)	335, 520, 690, 843, 1068, 1099, 1154
Hsp92II	CATG	6 cut(s)	395, 770, 936, 974, 1081, 1430
HspAI	GCGC	1 cut(s)	1056
KpnI	GGTACC	1 cut(s)	550
Ksp22I	TGATCA	1 cut(s)	1249
KspI	CCGCGG	1 cut(s)	1184
Kzo9I	GATC	5 cut(s)	607, 625, 1088, 1249, 1258
LguI	GCTCTTC	1 cut(s)	1143
LmnI	GCTCC	1 cut(s)	1236
Lsp1109I	GCAGC	2 cut(s)	326, 1381
LweI	GCATC	3 cut(s)	685, 976, 1390
MaeI	CTAG	4 cut(s)	348, 516, 990, 1041
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	5 cut(s)	609, 627, 1090, 1251, 1260
MboI	GATC	5 cut(s)	607, 625, 1088, 1249, 1258
MlsI	TGGCCA	1 cut(s)	1217
MluNI	TGGCCA	1 cut(s)	1217
MlyI	GAGTC	2 cut(s)	656, 1344
Mox20I	TGGCCA	1 cut(s)	1217
MscI	TGGCCA	1 cut(s)	1217
MseI	TTAA	4 cut(s)	732, 777, 1032, 1139
Msp20I	TGGCCA	1 cut(s)	1217
MspA1I	CMGCKG	1 cut(s)	1183
MspI	CCGG	3 cut(s)	49, 82, 877
MspR9I	CCNGG	3 cut(s)	83, 863, 877
MvaI	CCWGG	1 cut(s)	863
MvnI	CGCG	1 cut(s)	1183
MwoI	GCNNNNNNNGC	4 cut(s)	727, 815, 986, 1400
NciI	CCSGG	2 cut(s)	83, 877
NdeII	GATC	5 cut(s)	607, 625, 1088, 1249, 1258
NheI	GCTAGC	1 cut(s)	989
NlaIII	CATG	6 cut(s)	395, 770, 936, 974, 1081, 1430
NlaIV	GGNNCC	3 cut(s)	180, 548, 1279
NmuCI	GTSAC	1 cut(s)	358
NspI	RCATGY	2 cut(s)	395, 1081
PciSI	GCTCTTC	1 cut(s)	1143
PcsI	WCGNNNNNNNCGW	1 cut(s)	488
PfeI	GAWTC	5 cut(s)	52, 368, 407, 470, 503
Pfl23II	CGTACG	1 cut(s)	1418
PflFI	GACNNNGTC	1 cut(s)	490
PflMI	CCANNNNNTGG	1 cut(s)	976
PkrI	GCNGC	2 cut(s)	341, 1396
PleI	GAGTC	2 cut(s)	656, 1343
PpsI	GAGTC	2 cut(s)	656, 1343
Psp6I	CCWGG	1 cut(s)	861
PspFI	CCCAGC	1 cut(s)	1193
PspGI	CCWGG	1 cut(s)	861
PspLI	CGTACG	1 cut(s)	1418
PspN4I	GGNNCC	3 cut(s)	180, 548, 1279
PstI	CTGCAG	1 cut(s)	1399
PsyI	GACNNNGTC	1 cut(s)	490
RsaI	GTAC	4 cut(s)	68, 548, 1319, 1420
RsaNI	GTAC	4 cut(s)	67, 547, 1318, 1419
SacII	CCGCGG	1 cut(s)	1184
SapI	GCTCTTC	1 cut(s)	1143
SaqAI	TTAA	4 cut(s)	732, 777, 1032, 1139
SatI	GCNGC	2 cut(s)	340, 1395
Sau3AI	GATC	5 cut(s)	607, 625, 1088, 1249, 1258
SchI	GAGTC	2 cut(s)	656, 1344
ScrFI	CCNGG	3 cut(s)	83, 863, 877
SfaNI	GCATC	3 cut(s)	685, 976, 1390
SfcI	CTRYAG	2 cut(s)	736, 1395
Sfr303I	CCGCGG	1 cut(s)	1184
SgrBI	CCGCGG	1 cut(s)	1184
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
SsiI	CCGC	3 cut(s)	46, 1181, 1183
SspMI	CTAG	4 cut(s)	348, 516, 990, 1041
StyD4I	CCNGG	3 cut(s)	81, 861, 875
StyI	CCWWGG	1 cut(s)	1266
TaaI	ACNGT	8 cut(s)	566, 605, 704, 740, 832, 1144, 1161, 1231
TaqI	TCGA	4 cut(s)	482, 665, 920, 1359
TaqII	GACCGA	1 cut(s)	1271
TatI	WGTACW	1 cut(s)	1317
TfiI	GAWTC	5 cut(s)	52, 368, 407, 470, 503
Tru1I	TTAA	4 cut(s)	732, 777, 1032, 1139
Tru9I	TTAA	4 cut(s)	732, 777, 1032, 1139
TscAI	CASTG	4 cut(s)	330, 571, 610, 745
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	339, 1394
Tsp45I	GTSAC	1 cut(s)	358
TspGWI	ACGGA	2 cut(s)	428, 1101
TspRI	CASTG	4 cut(s)	330, 571, 610, 745
Tth111I	GACNNNGTC	1 cut(s)	490
Van91I	CCANNNNNTGG	1 cut(s)	976
XapI	RAATTY	2 cut(s)	853, 961
XceI	RCATGY	2 cut(s)	395, 1081
XmiI	GTMKAC	1 cut(s)	660
XspI	CTAG	4 cut(s)	348, 516, 990, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.