Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003544

Physical Location & Seq

Genomic Coordinates Reverse (-)

27260588 .. 27261820

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1178700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGTTGCTTTCTTGAATGTTTTGGTTCTTCCAAAGACAAAAAGCGCAGGAGGAATCTGAGGTACCGGGTTCACCACCGAGACCATAGACATACAAGTTTCGAGCCTGTGAAATCTGCTCTCTCTTCTGCACCGGAGGTTGAGGAAAAACCTATTAGCCCGGCATTGGAAGAAGTCCGGGATAAGCCAGTGGAGCAACTGAGCTTCAGTACTCGAAAGAAAGTTACTTTTGATTCGAATGTTAAGACCTACGAGCATGTTTCGACCAACGAAGCTACGGATCCTTTGTTGGATAGTAAAGAGAATGGGAAGGAGGAGGAGGGGAAGAATTTGGAAAAACCGTGCCAATCTAAGTCTTCCTCTGAAGATAGTTCGGTCACTTCCAGCTCAGGGTCATACCCTCCTAACCATCGGTACCAAAATTGCAGGGATAGCGATGATGAAGAAAGCGTTAGACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.46

Weight (kDa)

6.32

Isoelectric Point (pI)

59.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04030 AT1G04030 AT5G44040
fragaria_vesca	FvH4_2g20800 FvH4_2g20800
malus_domestica	MD05G1191900.v1.1 MD10G1178600.v1.1 MD10G1178700.v1.1
prunus_persica	Prupe.8G218000_v2.0.a1 Prupe.8G218000_v2.0.a1
pyrus_communis	pycom05g17880 pycom10g15500
rosa_chinensis	RchiOBHm_Chr0c16g0499811 RchiOBHm_Chr6g0287131 RchiOBHm_Chr6g0287181
rosa_laevigata	RLG00000012518
rosa_multiflora	Rmu_sc0005297.1_g000021
rosa_roxburghii	Rroxscaffold_7G00181680
rosa_rugosa	Rorug06G0185800 Rorug06G0185900 Rorug06G0185900
rosa_samantha	Rh6AG297200 Rh6BG302400 Rh6CG307500 Rh6CG309500 Rh6CG309800 Rh6CG310000 Rh6CG310400 Rh6CG310600 Rh6DG293100 Rh6DG293400 Rh6DG293600 Rh6DG294000 Rh6DG294300
rosa_wichuraiana	Rw6G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	63, 414
AccB1I	GGYRCC	2 cut(s)	63, 414
AclWI	GGATC	2 cut(s)	275, 288
AcsI	RAATTY	1 cut(s)	328
AcuI	CTGAAG	2 cut(s)	190, 384
AfaI	GTAC	3 cut(s)	65, 211, 416
AfiI	CCNNNNNNNGG	2 cut(s)	166, 390
AgsI	TTSAA	1 cut(s)	17
AluBI	AGCT	3 cut(s)	204, 275, 387
AluI	AGCT	3 cut(s)	204, 275, 387
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	2 cut(s)	275, 288
ApoI	RAATTY	1 cut(s)	328
Asp718I	GGTACC	2 cut(s)	63, 414
AspLEI	GCGC	1 cut(s)	48
AsuC2I	CCSGG	3 cut(s)	68, 161, 179
AsuHPI	GGTGA	1 cut(s)	65
AsuII	TTCGAA	1 cut(s)	236
BamHI	GGATCC	1 cut(s)	280
BanI	GGYRCC	2 cut(s)	63, 414
BbsI	GAAGAC	1 cut(s)	348
BccI	CCATC	1 cut(s)	417
BcnI	CCSGG	3 cut(s)	68, 161, 179
BcoDI	GTCTC	1 cut(s)	75
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	3 cut(s)	68, 161, 179
BmiI	GGNNCC	3 cut(s)	65, 282, 416
BmrFI	CCNGG	3 cut(s)	68, 161, 179
BpiI	GAAGAC	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	388
Bpu14I	TTCGAA	1 cut(s)	236
BpuMI	CCSGG	3 cut(s)	68, 161, 179
BsaI	GGTCTC	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 390
Bse1I	ACTGG	1 cut(s)	188
BseLI	CCNNNNNNNGG	2 cut(s)	166, 390
BseMII	CTCAG	3 cut(s)	50, 191, 402
BseNI	ACTGG	1 cut(s)	188
BseRI	GAGGAG	2 cut(s)	329, 332
BsgI	GTGCAG	1 cut(s)	114
BshNI	GGYRCC	2 cut(s)	63, 414
BsiSI	CCGG	4 cut(s)	67, 134, 161, 178
BslI	CCNNNNNNNGG	2 cut(s)	166, 390
BsmAI	GTCTC	1 cut(s)	75
Bso31I	GGTCTC	1 cut(s)	75
Bsp119I	TTCGAA	1 cut(s)	236
Bsp143I	GATC	1 cut(s)	280
BspCNI	CTCAG	3 cut(s)	51, 192, 401
BspLI	GGNNCC	3 cut(s)	65, 282, 416
BspPI	GGATC	2 cut(s)	275, 288
BspT104I	TTCGAA	1 cut(s)	236
BspT107I	GGYRCC	2 cut(s)	63, 414
BspTNI	GGTCTC	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	188
BssMI	GATC	1 cut(s)	280
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	130
BstBI	TTCGAA	1 cut(s)	236
BstDEI	CTNAG	4 cut(s)	59, 200, 351, 388
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	1 cut(s)	283
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 432
BstNSI	RCATGY	1 cut(s)	260
BstSCI	CCNGG	3 cut(s)	66, 159, 177
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BtgZI	GCGATG	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	195
CfoI	GCGC	1 cut(s)	48
Csp6I	GTAC	3 cut(s)	64, 210, 415
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	6 cut(s)	106, 159, 187, 204, 275, 387
CviKI_1	RGCY	6 cut(s)	106, 159, 187, 204, 275, 387
CviQI	GTAC	3 cut(s)	64, 210, 415
DdeI	CTNAG	4 cut(s)	59, 200, 351, 388
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Eco31I	GGTCTC	1 cut(s)	75
Eco57I	CTGAAG	2 cut(s)	190, 384
FaeI	CATG	1 cut(s)	260
FaiI	YATR	5 cut(s)	87, 93, 258, 397, 460
FatI	CATG	1 cut(s)	256
GlaI	GCGC	1 cut(s)	47
HapII	CCGG	4 cut(s)	67, 134, 161, 178
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	1 cut(s)	260
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	2 cut(s)	55, 233
HpaII	CCGG	4 cut(s)	67, 134, 161, 178
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	60, 364
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4V	TGCA	2 cut(s)	131, 426
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 432
HpyF3I	CTNAG	4 cut(s)	59, 200, 351, 388
Hsp92II	CATG	1 cut(s)	260
HspAI	GCGC	1 cut(s)	46
KpnI	GGTACC	2 cut(s)	67, 418
Kzo9I	GATC	1 cut(s)	280
LmnI	GCTCC	1 cut(s)	193
MaeIII	GTNAC	2 cut(s)	223, 376
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	7 cut(s)	21, 117, 182, 337, 348, 377, 455
MflI	RGATCY	1 cut(s)	280
MluCI	AATT	2 cut(s)	328, 421
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	9 cut(s)	45, 54, 130, 136, 307, 310, 313, 370, 411
MseI	TTAA	1 cut(s)	243
MspI	CCGG	4 cut(s)	67, 134, 161, 178
MspR9I	CCNGG	3 cut(s)	68, 161, 179
MwoI	GCNNNNNNNGC	2 cut(s)	193, 432
NciI	CCSGG	3 cut(s)	68, 161, 179
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	3 cut(s)	65, 282, 416
NmuCI	GTSAC	1 cut(s)	376
NspI	RCATGY	1 cut(s)	260
NspV	TTCGAA	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	55, 233
PfoI	TCCNGGA	1 cut(s)	177
PspN4I	GGNNCC	3 cut(s)	65, 282, 416
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	3 cut(s)	65, 211, 416
RsaNI	GTAC	3 cut(s)	64, 210, 415
SaqAI	TTAA	1 cut(s)	243
Sau3AI	GATC	1 cut(s)	280
ScaI	AGTACT	1 cut(s)	211
ScrFI	CCNGG	3 cut(s)	68, 161, 179
SetI	ASST	7 cut(s)	65, 141, 154, 206, 251, 277, 389
SfuI	TTCGAA	1 cut(s)	236
Sse9I	AATT	2 cut(s)	328, 421
StyD4I	CCNGG	3 cut(s)	66, 159, 177
TaaI	ACNGT	1 cut(s)	342
TaqI	TCGA	4 cut(s)	102, 214, 236, 263
TaqII	GACCGA	1 cut(s)	364
TasI	AATT	2 cut(s)	328, 421
TatI	WGTACW	1 cut(s)	209
TfiI	GAWTC	2 cut(s)	55, 233
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	1 cut(s)	456
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	1 cut(s)	195
XapI	RAATTY	1 cut(s)	328
XceI	RCATGY	1 cut(s)	260
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.