Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003544

Physical Location & Seq

Genomic Coordinates Reverse (-)

27259625 .. 27260586

Gene Structure 962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1178600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGACTGAGGATTTTGATAGTCCAATGCCGATGAAACCAGGTGGGTTGAACCACAATGCGCGCGATAGGAGTGGTTATGTTCATTCGGTGCTAAACCCAGTTGAGAATCTTACACAATGGAAAGCTGTCAAAGCCAAAGGGACACCACTGATGAAACCTCAGAAAGAGAATTTCACACAAGATCAAGAACCCCGGATTTCGTTCAGTTCAGAGCCAAGTTTGAGCTTTAAAACAAAAGCTGATCAAGACAAGAAGCAATCAAAGAATCCCAACCAAGAATTGGCAGTTGATGCTAGCCTCTCGAACTGGTTGGTTTCATCAGAACATACGCCAGTTAACAAGGCCAGCACAACTGCTTTAGACACCTTCACGCCTGAGAAAAGCACTTCCCATGGATCAAACTCAGCAAGAAGCCATCAAGATAGACCAATTTTAGGTGCATTAACTGTTGAAGAGCTCAGACAATTTCCAGCCTCATCTTCACCAAGGAAGTCACCGAGTAGAAGCCCTGACGAGATGGCCATAATAGGGTCTGTTGGAACATACTGGAATCACAGAGCTCCTCCTCCCGCTGCTAAGAGTTTGGGTGCCTCATCTTTCAAAGGAATACCAAACTCAACCAGCAAATACAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.1

Weight (kDa)

9.52

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04030 AT1G04030 AT5G44040
fragaria_vesca	FvH4_2g20800 FvH4_2g20800
malus_domestica	MD05G1191900.v1.1 MD10G1178600.v1.1 MD10G1178700.v1.1
prunus_persica	Prupe.8G218000_v2.0.a1 Prupe.8G218000_v2.0.a1
pyrus_communis	pycom05g17880 pycom10g15500
rosa_chinensis	RchiOBHm_Chr0c16g0499811 RchiOBHm_Chr6g0287131 RchiOBHm_Chr6g0287181
rosa_laevigata	RLG00000012518
rosa_multiflora	Rmu_sc0005297.1_g000021
rosa_roxburghii	Rroxscaffold_7G00181680
rosa_rugosa	Rorug06G0185800 Rorug06G0185900 Rorug06G0185900
rosa_samantha	Rh6AG297200 Rh6BG302400 Rh6CG307500 Rh6CG309500 Rh6CG309800 Rh6CG310000 Rh6CG310400 Rh6CG310600 Rh6DG293100 Rh6DG293400 Rh6DG293600 Rh6DG294000 Rh6DG294300
rosa_wichuraiana	Rw6G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	587
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccII	CGCG	2 cut(s)	61, 63
AciI	CCGC	1 cut(s)	570
AclWI	GGATC	1 cut(s)	403
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	1 cut(s)	169
AfiI	CCNNNNNNNGG	3 cut(s)	280, 434, 528
AgsI	TTSAA	3 cut(s)	49, 452, 601
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	5 cut(s)	125, 225, 239, 457, 560
AluI	AGCT	5 cut(s)	125, 225, 239, 457, 560
Alw21I	GWGCWC	2 cut(s)	459, 562
AlwI	GGATC	1 cut(s)	403
AoxI	GGCC	2 cut(s)	342, 519
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	1 cut(s)	169
AspLEI	GCGC	2 cut(s)	61, 63
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	2 cut(s)	474, 486
AsuNHI	GCTAGC	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	521
BanI	GGYRCC	1 cut(s)	587
BanII	GRGCYC	2 cut(s)	459, 562
Bbv12I	GWGCWC	2 cut(s)	459, 562
BbvI	GCAGC	1 cut(s)	559
BccI	CCATC	2 cut(s)	423, 511
BciT130I	CCWGG	1 cut(s)	39
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	193
BfaI	CTAG	1 cut(s)	294
BisI	GCNGC	1 cut(s)	573
BlsI	GCNGC	1 cut(s)	574
Bme1390I	CCNGG	2 cut(s)	39, 193
BmiI	GGNNCC	1 cut(s)	589
BmrFI	CCNGG	2 cut(s)	39, 193
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	280
BmtI	GCTAGC	1 cut(s)	297
BmuI	ACTGGG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	193
BsaJI	CCNNGG	3 cut(s)	191, 391, 485
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 434, 528
Bse1I	ACTGG	4 cut(s)	98, 311, 332, 551
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	3 cut(s)	191, 391, 485
BseLI	CCNNNNNNNGG	3 cut(s)	280, 434, 528
BseMII	CTCAG	4 cut(s)	173, 366, 417, 472
BseNI	ACTGG	4 cut(s)	98, 311, 332, 551
BsePI	GCGCGC	1 cut(s)	59
BseRI	GAGGAG	2 cut(s)	552, 555
BseXI	GCAGC	1 cut(s)	559
Bsh1236I	CGCG	2 cut(s)	61, 63
BshFI	GGCC	2 cut(s)	344, 521
BshNI	GGYRCC	1 cut(s)	587
BsiHKAI	GWGCWC	2 cut(s)	459, 562
BsiSI	CCGG	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	3 cut(s)	280, 434, 528
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	2 cut(s)	344, 521
Bsp1286I	GDGCHC	2 cut(s)	459, 562
Bsp143I	GATC	3 cut(s)	181, 241, 395
Bsp19I	CCATGG	1 cut(s)	391
BspACI	CCGC	1 cut(s)	570
BspANI	GGCC	2 cut(s)	344, 521
BspCNI	CTCAG	4 cut(s)	172, 367, 416, 471
BspFNI	CGCG	2 cut(s)	61, 63
BspLI	GGNNCC	1 cut(s)	589
BspOI	GCTAGC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	403
BspQI	GCTCTTC	1 cut(s)	447
BspT107I	GGYRCC	1 cut(s)	587
BsrI	ACTGG	4 cut(s)	98, 311, 332, 551
BssECI	CCNNGG	3 cut(s)	191, 391, 485
BssHII	GCGCGC	1 cut(s)	59
BssMI	GATC	3 cut(s)	181, 241, 395
BssT1I	CCWWGG	2 cut(s)	391, 485
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	1 cut(s)	447
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstC8I	GCNNGC	3 cut(s)	61, 295, 346
BstDEI	CTNAG	6 cut(s)	6, 159, 375, 403, 458, 576
BstDSI	CCRYGG	1 cut(s)	391
BstFNI	CGCG	2 cut(s)	61, 63
BstHHI	GCGC	2 cut(s)	61, 63
BstKTI	GATC	3 cut(s)	184, 244, 398
BstMBI	GATC	3 cut(s)	181, 241, 395
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 290
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	2 cut(s)	37, 191
BstUI	CGCG	2 cut(s)	61, 63
BstV1I	GCAGC	1 cut(s)	559
BsuRI	GGCC	2 cut(s)	344, 521
BtgI	CCRYGG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	3 cut(s)	61, 295, 346
CfoI	GCGC	2 cut(s)	61, 63
CsiI	ACCWGGT	1 cut(s)	37
CviAII	CATG	1 cut(s)	392
DdeI	CTNAG	6 cut(s)	6, 159, 375, 403, 458, 576
DpnI	GATC	3 cut(s)	183, 243, 397
DpnII	GATC	3 cut(s)	181, 241, 395
DraI	TTTAAA	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Ecl136II	GAGCTC	2 cut(s)	457, 560
Eco130I	CCWWGG	2 cut(s)	391, 485
Eco24I	GRGCYC	2 cut(s)	459, 562
Eco53kI	GAGCTC	2 cut(s)	457, 560
EcoICRI	GAGCTC	2 cut(s)	457, 560
EcoRII	CCWGG	1 cut(s)	37
EcoT14I	CCWWGG	2 cut(s)	391, 485
EcoT38I	GRGCYC	2 cut(s)	459, 562
ErhI	CCWWGG	2 cut(s)	391, 485
FaeI	CATG	1 cut(s)	395
FaiI	YATR	5 cut(s)	78, 327, 393, 524, 544
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	1 cut(s)	391
FauI	CCCGC	1 cut(s)	577
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	1 cut(s)	573
FriOI	GRGCYC	2 cut(s)	459, 562
Fsp4HI	GCNGC	1 cut(s)	573
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	2 cut(s)	60, 62
GluI	GCNGC	1 cut(s)	573
HaeIII	GGCC	2 cut(s)	344, 521
HapII	CCGG	1 cut(s)	193
HhaI	GCGC	2 cut(s)	61, 63
Hin1II	CATG	1 cut(s)	395
Hin6I	GCGC	2 cut(s)	59, 61
HinP1I	GCGC	2 cut(s)	59, 61
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	3 cut(s)	106, 265, 550
HpaI	GTTAAC	1 cut(s)	337
HpaII	CCGG	1 cut(s)	193
HphI	GGTGA	2 cut(s)	474, 486
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	4 cut(s)	162, 211, 322, 461
Hpy188III	TCNNGA	4 cut(s)	185, 245, 301, 419
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	1 cut(s)	376
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4V	TGCA	1 cut(s)	440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 290
HpyF3I	CTNAG	6 cut(s)	6, 159, 375, 403, 458, 576
Hsp92II	CATG	1 cut(s)	395
HspAI	GCGC	2 cut(s)	59, 61
Ksp22I	TGATCA	1 cut(s)	241
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	181, 241, 395
LguI	GCTCTTC	1 cut(s)	447
LmnI	GCTCC	1 cut(s)	565
Lsp1109I	GCAGC	1 cut(s)	559
LweI	GCATC	1 cut(s)	280
MabI	ACCWGGT	1 cut(s)	37
MaeI	CTAG	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	492
MalI	GATC	3 cut(s)	183, 243, 397
MboI	GATC	3 cut(s)	181, 241, 395
MboII	GAAGA	2 cut(s)	464, 471
MhlI	GDGCHC	2 cut(s)	459, 562
MlsI	TGGCCA	1 cut(s)	521
MluCI	AATT	4 cut(s)	169, 278, 429, 464
MluNI	TGGCCA	1 cut(s)	521
MmeI	TCCRAC	1 cut(s)	517
MnlI	CCTC	6 cut(s)	168, 308, 484, 573, 576, 601
Mox20I	TGGCCA	1 cut(s)	521
MscI	TGGCCA	1 cut(s)	521
MseI	TTAA	3 cut(s)	228, 336, 443
Msp20I	TGGCCA	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	2 cut(s)	39, 193
MvaI	CCWGG	1 cut(s)	39
MvnI	CGCG	2 cut(s)	61, 63
MwoI	GCNNNNNNNGC	2 cut(s)	131, 290
NciI	CCSGG	1 cut(s)	193
NcoI	CCATGG	1 cut(s)	391
NdeII	GATC	3 cut(s)	181, 241, 395
NheI	GCTAGC	1 cut(s)	293
NlaIII	CATG	1 cut(s)	395
NlaIV	GGNNCC	1 cut(s)	589
NmuCI	GTSAC	1 cut(s)	492
PauI	GCGCGC	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	447
PfeI	GAWTC	3 cut(s)	106, 265, 550
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	574
Psp124BI	GAGCTC	2 cut(s)	459, 562
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	589
PteI	GCGCGC	1 cut(s)	59
SacI	GAGCTC	2 cut(s)	459, 562
SapI	GCTCTTC	1 cut(s)	447
SaqAI	TTAA	3 cut(s)	228, 336, 443
SatI	GCNGC	1 cut(s)	573
Sau3AI	GATC	3 cut(s)	181, 241, 395
ScrFI	CCNGG	2 cut(s)	39, 193
SduI	GDGCHC	2 cut(s)	459, 562
SetI	ASST	9 cut(s)	43, 127, 160, 227, 241, 368, 439, 459, 562
SexAI	ACCWGGT	1 cut(s)	37
SfaNI	GCATC	1 cut(s)	280
Sse9I	AATT	4 cut(s)	169, 278, 429, 464
SsiI	CCGC	1 cut(s)	570
SspMI	CTAG	1 cut(s)	294
SstI	GAGCTC	2 cut(s)	459, 562
StyD4I	CCNGG	2 cut(s)	37, 191
StyI	CCWWGG	2 cut(s)	391, 485
TaaI	ACNGT	1 cut(s)	448
TaqI	TCGA	1 cut(s)	302
TasI	AATT	4 cut(s)	169, 278, 429, 464
TfiI	GAWTC	3 cut(s)	106, 265, 550
Tru1I	TTAA	3 cut(s)	228, 336, 443
Tru9I	TTAA	3 cut(s)	228, 336, 443
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	492
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	1 cut(s)	492
TspDTI	ATGAA	4 cut(s)	47, 71, 167, 306
TspRI	CASTG	1 cut(s)	153
Van91I	CCANNNNNTGG	1 cut(s)	280
XapI	RAATTY	1 cut(s)	169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.