Rh6CG310400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003544
Physical Location & Seq
Reverse (-)
49464196 .. 49464886
691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG310400.1

Sequence Viewer

Length: 606 bp
ATGAAGCCTCAGAAGGAGAATTTCACCCTGGATGATGAACGCCGGATTTCATTCAGTTCAGAGCCAAATATTAAGGAAGTATCATCGAGTTTCAAGTCACGTAAGAGGCAATCTGGTCAGGCCAGGAATTATAACCAAGATATGGCAGTTGATGCTAGCCTGTCAAATTGTTTGGGTTCATCAGAAGCTACACTTGTTAACAAGACTAGCACAATATCTCTGGACACGTCTATGCCTGAGAAAAGCATGTCCTACGGATTACCACACTCAGCAACAAGCCACGAAGATAGACCAATTTTAGGTGCATTAACAGTTGAAGAGCTGAGACAGTTTTCAACTTCATCTTCACCGCGGAAGTCACCTAGCAGAAGCCCTGATGAGATGGCCATAATTGGGACTGTTGGGAGCTACTGGAATGATCACACTGGTCCTGCCAAGGGTTCTGGCGCCTCCTCTTACAAAGGAATATCAAACACGACCAGCAAGTACAGAGAGGATAGAAGAGTCAACTGGCACTCTACCCCATTTGAGACACGGCTGGAAAGAGCTTTGAATAGAGGTGTTGCAGATGCTTACTCTTCTTCTCGTACGCCTCATGGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.17

Weight (kDa)

9.21

Isoelectric Point (pI)

55.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 446
AccB7I CCANNNNNTGG 1 cut(s) 142
AccII CGCG 1 cut(s) 352
AciI CCGC 2 cut(s) 350, 352
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 1 cut(s) 19
AcyI GRCGYC 1 cut(s) 447
AfaI GTAC 2 cut(s) 488, 589
AfiI CCNNNNNNNGG 4 cut(s) 142, 299, 393, 437
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 4 cut(s) 94, 317, 336, 553
AjiI CACGTC 1 cut(s) 228
AjnI CCWGG 2 cut(s) 27, 122
AluBI AGCT 4 cut(s) 188, 322, 408, 548
AluI AGCT 4 cut(s) 188, 322, 408, 548
Alw26I GTCTC 2 cut(s) 319, 524
AoxI GGCC 2 cut(s) 120, 384
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 1 cut(s) 449
AspS9I GGNCC 1 cut(s) 428
AsuHPI GGTGA 3 cut(s) 16, 339, 351
AsuNHI GCTAGC 1 cut(s) 155
AvaII GGWCC 1 cut(s) 428
BalI TGGCCA 1 cut(s) 386
BanI GGYRCC 1 cut(s) 446
BccI CCATC 1 cut(s) 376
BceAI ACGGC 1 cut(s) 551
BciT130I CCWGG 2 cut(s) 29, 124
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 319, 524
BfaI CTAG 3 cut(s) 156, 207, 363
BfoI RGCGCY 1 cut(s) 450
Bme1390I CCNGG 2 cut(s) 29, 124
Bme18I GGWCC 1 cut(s) 428
BmgBI CACGTC 1 cut(s) 228
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 1 cut(s) 448
BmrFI CCNGG 2 cut(s) 29, 124
BmsI GCATC 2 cut(s) 142, 559
BmtI GCTAGC 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 447
BsaJI CCNNGG 3 cut(s) 27, 350, 435
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 299, 393, 437
Bse1I ACTGG 3 cut(s) 416, 430, 515
BseBI CCWGG 2 cut(s) 29, 124
BseDI CCNNGG 3 cut(s) 27, 350, 435
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 4 cut(s) 142, 299, 393, 437
BseMII CTCAG 4 cut(s) 23, 228, 282, 314
BseNI ACTGG 3 cut(s) 416, 430, 515
BseRI GAGGAG 1 cut(s) 442
Bsh1236I CGCG 1 cut(s) 352
BshFI GGCC 2 cut(s) 122, 386
BshNI GGYRCC 1 cut(s) 446
BsiSI CCGG 1 cut(s) 43
BsiWI CGTACG 1 cut(s) 587
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 4 cut(s) 142, 299, 393, 437
BsmAI GTCTC 2 cut(s) 319, 524
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 2 cut(s) 122, 386
Bsp143I GATC 1 cut(s) 418
BspACI CCGC 2 cut(s) 350, 352
BspANI GGCC 2 cut(s) 122, 386
BspCNI CTCAG 4 cut(s) 22, 229, 281, 315
BspFNI CGCG 1 cut(s) 352
BspLI GGNNCC 1 cut(s) 448
BspOI GCTAGC 1 cut(s) 159
BspQI GCTCTTC 1 cut(s) 312
BspT107I GGYRCC 1 cut(s) 446
BsrI ACTGG 3 cut(s) 416, 430, 515
BssECI CCNNGG 3 cut(s) 27, 350, 435
BssMI GATC 1 cut(s) 418
BssNI GRCGYC 1 cut(s) 447
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 2 cut(s) 29, 124
Bst4CI ACNGT 3 cut(s) 313, 330, 400
Bst6I CTCTTC 3 cut(s) 312, 496, 583
BstACI GRCGYC 1 cut(s) 447
BstAPI GCANNNNNTGC 1 cut(s) 152
BstBAI YACGTR 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 4 cut(s) 9, 237, 268, 323
BstDSI CCRYGG 1 cut(s) 350
BstF5I GGATG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 352
BstH2I RGCGCY 1 cut(s) 450
BstHHI GCGC 1 cut(s) 449
BstKTI GATC 1 cut(s) 421
BstMAI GTCTC 2 cut(s) 319, 524
BstMBI GATC 1 cut(s) 418
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 2 cut(s) 29, 124
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 2 cut(s) 27, 122
BstUI CGCG 1 cut(s) 352
BsuRI GGCC 2 cut(s) 122, 386
BtgI CCRYGG 1 cut(s) 350
BtrI CACGTC 1 cut(s) 228
BtsCI GGATG 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 1 cut(s) 449
Cfr13I GGNCC 1 cut(s) 428
Cfr42I CCGCGG 1 cut(s) 353
Csp6I GTAC 2 cut(s) 487, 588
CviAII CATG 2 cut(s) 247, 596
CviQI GTAC 2 cut(s) 487, 588
DdeI CTNAG 4 cut(s) 9, 237, 268, 323
DinI GGCGCC 1 cut(s) 448
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 3 cut(s) 312, 496, 583
EarI CTCTTC 3 cut(s) 312, 496, 583
Eco130I CCWWGG 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 428
EcoRII CCWGG 2 cut(s) 27, 122
EcoT14I CCWWGG 1 cut(s) 435
EgeI GGCGCC 1 cut(s) 448
EheI GGCGCC 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 2 cut(s) 250, 599
FaiI YATR 6 cut(s) 132, 143, 233, 248, 389, 597
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FaqI GGGAC 1 cut(s) 409
FatI CATG 2 cut(s) 246, 595
FbaI TGATCA 1 cut(s) 418
FokI GGATG 1 cut(s) 44
FspBI CTAG 3 cut(s) 156, 207, 363
GlaI GCGC 1 cut(s) 448
HaeII RGCGCY 1 cut(s) 450
HaeIII GGCC 2 cut(s) 122, 386
HapII CCGG 1 cut(s) 43
HhaI GCGC 1 cut(s) 449
Hin1I GRCGYC 1 cut(s) 447
Hin1II CATG 2 cut(s) 250, 599
Hin6I GCGC 1 cut(s) 447
HinP1I GCGC 1 cut(s) 447
HincII GTYRAC 2 cut(s) 199, 508
HindII GTYRAC 2 cut(s) 199, 508
HinfI GANTC 1 cut(s) 504
HpaI GTTAAC 1 cut(s) 199
HpaII CCGG 1 cut(s) 43
HphI GGTGA 3 cut(s) 16, 339, 351
Hpy166II GTNNAC 2 cut(s) 199, 508
Hpy188I TCNGA 3 cut(s) 12, 61, 184
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 2 cut(s) 199, 508
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 3 cut(s) 313, 330, 400
HpyCH4IV ACGT 2 cut(s) 100, 227
HpyCH4V TGCA 2 cut(s) 305, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 4 cut(s) 9, 237, 268, 323
HpySE526I ACGT 2 cut(s) 100, 227
Hsp92I GRCGYC 1 cut(s) 447
Hsp92II CATG 2 cut(s) 250, 599
HspAI GCGC 1 cut(s) 447
KasI GGCGCC 1 cut(s) 446
Ksp22I TGATCA 1 cut(s) 418
KspAI GTTAAC 1 cut(s) 199
KspI CCGCGG 1 cut(s) 353
Kzo9I GATC 1 cut(s) 418
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 1 cut(s) 405
LweI GCATC 2 cut(s) 142, 559
MaeI CTAG 3 cut(s) 156, 207, 363
MaeII ACGT 2 cut(s) 100, 227
MaeIII GTNAC 2 cut(s) 96, 357
MalI GATC 1 cut(s) 420
MboI GATC 1 cut(s) 418
MboII GAAGA 6 cut(s) 296, 329, 336, 513, 570, 573
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 5 cut(s) 19, 127, 166, 294, 390
MluNI TGGCCA 1 cut(s) 386
Mly113I GGCGCC 1 cut(s) 447
MlyI GAGTC 1 cut(s) 513
MnlI CCTC 7 cut(s) 18, 99, 460, 463, 487, 551, 603
Mox20I TGGCCA 1 cut(s) 386
MscI TGGCCA 1 cut(s) 386
MseI TTAA 3 cut(s) 72, 198, 308
MslI CAYNNNNRTG 1 cut(s) 230
Msp20I TGGCCA 1 cut(s) 386
MspA1I CMGCKG 1 cut(s) 352
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 2 cut(s) 29, 124
MvaI CCWGG 2 cut(s) 29, 124
MvnI CGCG 1 cut(s) 352
MwoI GCNNNNNNNGC 1 cut(s) 152
NarI GGCGCC 1 cut(s) 447
NdeII GATC 1 cut(s) 418
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 2 cut(s) 250, 599
NlaIV GGNNCC 1 cut(s) 448
NmuCI GTSAC 2 cut(s) 96, 357
NspI RCATGY 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 312
Pfl23II CGTACG 1 cut(s) 587
PflMI CCANNNNNTGG 1 cut(s) 142
PleI GAGTC 1 cut(s) 512
PluTI GGCGCC 1 cut(s) 450
PpsI GAGTC 1 cut(s) 512
Ppu21I YACGTR 1 cut(s) 101
PsiI TTATAA 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 27, 122
PspGI CCWGG 2 cut(s) 27, 122
PspLI CGTACG 1 cut(s) 587
PspN4I GGNNCC 1 cut(s) 448
PspPI GGNCC 1 cut(s) 428
RsaI GTAC 2 cut(s) 488, 589
RsaNI GTAC 2 cut(s) 487, 588
RseI CAYNNNNRTG 1 cut(s) 230
SacII CCGCGG 1 cut(s) 353
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 3 cut(s) 72, 198, 308
Sau3AI GATC 1 cut(s) 418
Sau96I GGNCC 1 cut(s) 428
SchI GAGTC 1 cut(s) 513
ScrFI CCNGG 2 cut(s) 29, 124
SetI ASST 9 cut(s) 103, 190, 230, 304, 324, 364, 410, 550, 562
SfaNI GCATC 2 cut(s) 142, 559
SfoI GGCGCC 1 cut(s) 448
Sfr303I CCGCGG 1 cut(s) 353
SgrBI CCGCGG 1 cut(s) 353
SinI GGWCC 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 230
Sse9I AATT 5 cut(s) 19, 127, 166, 294, 390
SsiI CCGC 2 cut(s) 350, 352
SspDI GGCGCC 1 cut(s) 446
SspI AATATT 1 cut(s) 70
SspMI CTAG 3 cut(s) 156, 207, 363
StyD4I CCNGG 2 cut(s) 27, 122
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 3 cut(s) 313, 330, 400
TaiI ACGT 2 cut(s) 103, 230
TaqI TCGA 1 cut(s) 86
TasI AATT 5 cut(s) 19, 127, 166, 294, 390
TatI WGTACW 1 cut(s) 486
Tru1I TTAA 3 cut(s) 72, 198, 308
Tru9I TTAA 3 cut(s) 72, 198, 308
TscAI CASTG 1 cut(s) 430
TseFI GTSAC 2 cut(s) 96, 357
Tsp45I GTSAC 2 cut(s) 96, 357
TspDTI ATGAA 5 cut(s) 17, 39, 51, 168, 330
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 1 cut(s) 430
Van91I CCANNNNNTGG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 428
XapI RAATTY 1 cut(s) 19
XceI RCATGY 1 cut(s) 250
XspI CTAG 3 cut(s) 156, 207, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.