Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003544

Physical Location & Seq

Genomic Coordinates Reverse (-)

49613176 .. 49616046

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG297200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGGTTGCTTTCTTGCGTGTTTTGGTTCTTCCAAAGATAAAAGCCGCAGGAATCAACAGAGGTACAGGGTTCAGCACCGAGAACAAAGATATACAAGTTTTGAGCCTGTTCAATCTGCTGTGTCTTCTGTGCCGGTTTGGGAAAAACCCATTAGCCCGGAATTGAAATATGAAAAACCCATCAGCCCGGAATTGAAATGTGAAAAACCCATCAGCCCAGAATTGAATGATGAAAAACCCATCAGCGTGGAATTGAAGAAAGAAAAACCCAGTAGCCCAGAATTGGAAGAAGTTAGGGATAAGCCAGTGGAACAACTGAGCTTCATTACTAGAAAGAAAGTTACTTTTGATTCTAATGTCCAAACCTATGAGCATGTTGCAATCAACGAATCCACGGATCTTTTATTCGATAGTAAAGAGTGTCAGCAGGAGGAGGGGAAAACCTTGAAAGAATCAAGCCAATCTAAGACTTCGTCTGAAGATGGTTCCATCACTTCTAGCTCAGGGTCATACCCTCCTAATCATAGGTACCAGAATTGCAGGGACAGTGACGATGAAGATGAACCATTAGACTATGATGAGGACAGTGATCTCGATGATGATGATGGTGATCTTGAGGATGACACTGATGATAATGGGGAACTAGAGTATGAAGATGAAATTGTAGACTCGAAGAGAGGGACACAAGTAATGACTGAGGATTCTGATAGTGCAATGCCGAAAAAGCCAACTGGGCTAAACTACAGTGCTCGTGATAGGAGTGGTTATGTTCATGCTGTGCTTAACCCGGTTGAAAATCTCACACAATGGAAAGCTGTCAAAGCCAAAAAGACAACAGTAATGAAGCCTCAGAAGGAGAATTTCACCCTGGCTGATGAACCCCGGATTTCGTTCAGTTCAGAGCCAAGTTTTAAGGAAGTATCGTCGAGTTTCAAATCACTTAAGAGGCAATCTGGTCAGGCCAGGAATTCTAACCAAGAAATGGCAGTTGATGCTAGCCTGTCAAATTGGTTGGGTTCATCAGAAGCTACACCTGTTTACAAGACTAGCACAATATCTCTGGACACTGCTACACCTGAGAAAAGCATGTCCTACGGATCACCACACTCAGCAACAAGCCACGAAGATAGACCAATTTTAGGTGCATTAACAGTTGAAGAGCTGAGACAGTTTTCAGCTTCATCTTCACCACGGAAGTCACCCAGTAGAAGCCCTGATGAGATGGCCATAATTGGGACTGTTGGGAGCTACTGGAATGATCACACTGGTCCTGACAAGGGTTCTGGCGCCTCCTCTTACAAAGGAATACCAAACACGACCAGCAAGTACAGAGAGGTACGCGTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

449

Amino Acids

50.22

Weight (kDa)

4.95

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04030 AT1G04030 AT5G44040
fragaria_vesca	FvH4_2g20800 FvH4_2g20800
malus_domestica	MD05G1191900.v1.1 MD10G1178600.v1.1 MD10G1178700.v1.1
prunus_persica	Prupe.8G218000_v2.0.a1 Prupe.8G218000_v2.0.a1
pyrus_communis	pycom05g17880 pycom10g15500
rosa_chinensis	RchiOBHm_Chr0c16g0499811 RchiOBHm_Chr6g0287131 RchiOBHm_Chr6g0287181
rosa_laevigata	RLG00000012518
rosa_multiflora	Rmu_sc0005297.1_g000021
rosa_roxburghii	Rroxscaffold_7G00181680
rosa_rugosa	Rorug06G0185800 Rorug06G0185900 Rorug06G0185900
rosa_samantha	Rh6AG297200 Rh6BG302400 Rh6CG307500 Rh6CG309500 Rh6CG309800 Rh6CG310000 Rh6CG310400 Rh6CG310600 Rh6DG293100 Rh6DG293400 Rh6DG293600 Rh6DG294000 Rh6DG294300
rosa_wichuraiana	Rw6G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	528
AccB1I	GGYRCC	2 cut(s)	528, 1286
AccB7I	CCANNNNNTGG	1 cut(s)	982
AccI	GTMKAC	1 cut(s)	666
AccII	CGCG	1 cut(s)	1341
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	2 cut(s)	405, 1105
AcoI	YGGCCR	1 cut(s)	1224
AcsI	RAATTY	2 cut(s)	859, 967
AcuI	CTGAAG	1 cut(s)	498
AcyI	GRCGYC	1 cut(s)	1287
AfaI	GTAC	4 cut(s)	65, 530, 1328, 1338
AfiI	CCNNNNNNNGG	5 cut(s)	283, 982, 1139, 1233, 1277
AflII	CTTAAG	1 cut(s)	941
AflIII	ACRYGT	1 cut(s)	1339
AgsI	TTSAA	9 cut(s)	113, 166, 196, 226, 256, 448, 794, 934, 1157
AjnI	CCWGG	2 cut(s)	867, 962
AluBI	AGCT	7 cut(s)	321, 501, 815, 1028, 1162, 1178, 1248
AluI	AGCT	7 cut(s)	321, 501, 815, 1028, 1162, 1178, 1248
Alw21I	GWGCWC	1 cut(s)	751
Alw26I	GTCTC	1 cut(s)	1159
AlwI	GGATC	2 cut(s)	405, 1105
AoxI	GGCC	2 cut(s)	960, 1224
ApoI	RAATTY	2 cut(s)	859, 967
Asp718I	GGTACC	1 cut(s)	528
AspLEI	GCGC	1 cut(s)	1289
AspS9I	GGNCC	1 cut(s)	1268
AsuC2I	CCSGG	4 cut(s)	158, 188, 788, 883
AsuHPI	GGTGA	5 cut(s)	620, 856, 1092, 1179, 1191
AsuNHI	GCTAGC	1 cut(s)	995
AvaII	GGWCC	1 cut(s)	1268
BalI	TGGCCA	1 cut(s)	1226
BanI	GGYRCC	2 cut(s)	528, 1286
BauI	CACGAG	1 cut(s)	750
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	751
BccI	CCATC	7 cut(s)	188, 218, 248, 476, 497, 599, 1216
BciT130I	CCWGG	2 cut(s)	869, 964
BclI	TGATCA	1 cut(s)	1258
BcnI	CCSGG	4 cut(s)	158, 188, 788, 883
BcoDI	GTCTC	1 cut(s)	1159
BfaI	CTAG	5 cut(s)	330, 498, 644, 996, 1047
BfmI	CTRYAG	1 cut(s)	742
BfoI	RGCGCY	1 cut(s)	1290
BfrI	CTTAAG	1 cut(s)	941
BglI	GCCNNNNNGGC	1 cut(s)	733
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
Bme1390I	CCNGG	6 cut(s)	158, 188, 788, 869, 883, 964
Bme18I	GGWCC	1 cut(s)	1268
BmgT120I	GGNCC	1 cut(s)	1268
BmiI	GGNNCC	3 cut(s)	487, 530, 1288
BmrFI	CCNGG	6 cut(s)	158, 188, 788, 869, 883, 964
BmrI	ACTGGG	3 cut(s)	264, 741, 1197
BmsI	GCATC	1 cut(s)	982
BmtI	GCTAGC	1 cut(s)	999
BmuI	ACTGGG	3 cut(s)	264, 741, 1197
BpiI	GAAGAC	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	635
BpuMI	CCSGG	4 cut(s)	158, 188, 788, 883
BsaBI	GATNNNNATC	1 cut(s)	609
BsaHI	GRCGYC	1 cut(s)	1287
BsaJI	CCNNGG	4 cut(s)	393, 867, 881, 1190
Bsc4I	CCNNNNNNNGG	5 cut(s)	283, 982, 1139, 1233, 1277
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	6 cut(s)	270, 305, 736, 1203, 1256, 1270
Bse3DI	GCAATG	1 cut(s)	720
Bse8I	GATNNNNATC	1 cut(s)	609
BseBI	CCWGG	2 cut(s)	869, 964
BseDI	CCNNGG	4 cut(s)	393, 867, 881, 1190
BseGI	GGATG	1 cut(s)	625
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	5 cut(s)	283, 982, 1139, 1233, 1277
BseMI	GCAATG	1 cut(s)	720
BseMII	CTCAG	7 cut(s)	308, 516, 687, 863, 1068, 1122, 1154
BseNI	ACTGG	6 cut(s)	270, 305, 736, 1203, 1256, 1270
BseRI	GAGGAG	2 cut(s)	446, 1282
Bsh1236I	CGCG	1 cut(s)	1341
BshFI	GGCC	2 cut(s)	962, 1226
BshNI	GGYRCC	2 cut(s)	528, 1286
BsiHKAI	GWGCWC	1 cut(s)	751
BsiSI	CCGG	5 cut(s)	134, 158, 188, 788, 883
BslFI	GGGAC	3 cut(s)	557, 694, 1249
BslI	CCNNNNNNNGG	5 cut(s)	283, 982, 1139, 1233, 1277
BsmAI	GTCTC	1 cut(s)	1159
BsmFI	GGGAC	3 cut(s)	557, 694, 1249
BsnI	GGCC	2 cut(s)	962, 1226
Bsp1286I	GDGCHC	1 cut(s)	751
Bsp143I	GATC	5 cut(s)	397, 589, 610, 1097, 1258
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	2 cut(s)	962, 1226
BspCNI	CTCAG	7 cut(s)	309, 515, 688, 862, 1069, 1121, 1155
BspFNI	CGCG	1 cut(s)	1341
BspLI	GGNNCC	3 cut(s)	487, 530, 1288
BspOI	GCTAGC	1 cut(s)	999
BspPI	GGATC	2 cut(s)	405, 1105
BspQI	GCTCTTC	1 cut(s)	1152
BspT107I	GGYRCC	2 cut(s)	528, 1286
BspTI	CTTAAG	1 cut(s)	941
BsrDI	GCAATG	1 cut(s)	720
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	6 cut(s)	270, 305, 736, 1203, 1256, 1270
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	4 cut(s)	393, 867, 881, 1190
BssMI	GATC	5 cut(s)	397, 589, 610, 1097, 1258
BssNI	GRCGYC	1 cut(s)	1287
BssSI	CACGAG	1 cut(s)	750
Bst2BI	CACGAG	1 cut(s)	750
Bst2UI	CCWGG	2 cut(s)	869, 964
Bst4CI	ACNGT	7 cut(s)	548, 587, 746, 838, 1153, 1170, 1240
Bst6I	CTCTTC	2 cut(s)	668, 1152
BstACI	GRCGYC	1 cut(s)	1287
BstAFI	CTTAAG	1 cut(s)	941
BstAPI	GCANNNNNTGC	1 cut(s)	992
BstC8I	GCNNGC	1 cut(s)	997
BstDEI	CTNAG	8 cut(s)	317, 465, 502, 696, 849, 1077, 1108, 1163
BstDSI	CCRYGG	2 cut(s)	393, 1190
BstF5I	GGATG	1 cut(s)	625
BstFNI	CGCG	1 cut(s)	1341
BstH2I	RGCGCY	1 cut(s)	1290
BstHHI	GCGC	1 cut(s)	1289
BstKTI	GATC	5 cut(s)	400, 592, 613, 1100, 1261
BstMAI	GTCTC	1 cut(s)	1159
BstMBI	GATC	5 cut(s)	397, 589, 610, 1097, 1258
BstMWI	GCNNNNNNNGC	4 cut(s)	724, 733, 821, 992
BstNI	CCWGG	2 cut(s)	869, 964
BstNSI	RCATGY	2 cut(s)	377, 1090
BstSCI	CCNGG	6 cut(s)	156, 186, 786, 867, 881, 962
BstSFI	CTRYAG	1 cut(s)	742
BstUI	CGCG	1 cut(s)	1341
BstV2I	GAAGAC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	397
BstXI	CCANNNNNNTGG	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	397
BsuRI	GGCC	2 cut(s)	962, 1226
BtgI	CCRYGG	2 cut(s)	393, 1190
BtsCI	GGATG	1 cut(s)	625
BtsI	GCAGTG	1 cut(s)	1065
BtsIMutI	CAGTG	7 cut(s)	312, 553, 592, 624, 751, 1065, 1263
Cac8I	GCNNGC	1 cut(s)	997
CfoI	GCGC	1 cut(s)	1289
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	1268
Csp6I	GTAC	4 cut(s)	64, 529, 1327, 1337
CviAII	CATG	3 cut(s)	374, 773, 1087
CviQI	GTAC	4 cut(s)	64, 529, 1327, 1337
DdeI	CTNAG	8 cut(s)	317, 465, 502, 696, 849, 1077, 1108, 1163
DinI	GGCGCC	1 cut(s)	1288
DpnI	GATC	5 cut(s)	399, 591, 612, 1099, 1260
DpnII	GATC	5 cut(s)	397, 589, 610, 1097, 1258
EaeI	YGGCCR	1 cut(s)	1224
Eam1104I	CTCTTC	2 cut(s)	668, 1152
EarI	CTCTTC	2 cut(s)	668, 1152
Eco47I	GGWCC	1 cut(s)	1268
Eco57I	CTGAAG	1 cut(s)	498
EcoRI	GAATTC	1 cut(s)	967
EcoRII	CCWGG	2 cut(s)	867, 962
EgeI	GGCGCC	1 cut(s)	1288
EheI	GGCGCC	1 cut(s)	1288
FaeI	CATG	3 cut(s)	377, 776, 1090
FaqI	GGGAC	3 cut(s)	557, 694, 1249
FatI	CATG	3 cut(s)	373, 772, 1086
FbaI	TGATCA	1 cut(s)	1258
FblI	GTMKAC	1 cut(s)	666
Fnu4HI	GCNGC	1 cut(s)	46
FokI	GGATG	1 cut(s)	632
Fsp4HI	GCNGC	1 cut(s)	46
FspBI	CTAG	5 cut(s)	330, 498, 644, 996, 1047
GlaI	GCGC	1 cut(s)	1288
GluI	GCNGC	1 cut(s)	46
HaeII	RGCGCY	1 cut(s)	1290
HaeIII	GGCC	2 cut(s)	962, 1226
HapII	CCGG	5 cut(s)	134, 158, 188, 788, 883
HhaI	GCGC	1 cut(s)	1289
Hin1I	GRCGYC	1 cut(s)	1287
Hin1II	CATG	3 cut(s)	377, 776, 1090
Hin6I	GCGC	1 cut(s)	1287
HinP1I	GCGC	1 cut(s)	1287
HinfI	GANTC	6 cut(s)	52, 350, 389, 452, 668, 701
HpaII	CCGG	5 cut(s)	134, 158, 188, 788, 883
HphI	GGTGA	5 cut(s)	620, 856, 1092, 1179, 1191
Hpy166II	GTNNAC	2 cut(s)	667, 1039
Hpy188I	TCNGA	5 cut(s)	478, 706, 852, 901, 1024
Hpy188III	TCNNGA	5 cut(s)	593, 614, 752, 1061, 1271
Hpy8I	GTNNAC	2 cut(s)	667, 1039
Hpy99I	CGWCG	1 cut(s)	928
HpyAV	CCTTC	1 cut(s)	847
HpyCH4III	ACNGT	7 cut(s)	548, 587, 746, 838, 1153, 1170, 1240
HpyCH4V	TGCA	4 cut(s)	380, 540, 713, 1145
HpyF10VI	GCNNNNNNNGC	4 cut(s)	724, 733, 821, 992
HpyF3I	CTNAG	8 cut(s)	317, 465, 502, 696, 849, 1077, 1108, 1163
Hsp92I	GRCGYC	1 cut(s)	1287
Hsp92II	CATG	3 cut(s)	377, 776, 1090
HspAI	GCGC	1 cut(s)	1287
KasI	GGCGCC	1 cut(s)	1286
KpnI	GGTACC	1 cut(s)	532
Ksp22I	TGATCA	1 cut(s)	1258
Kzo9I	GATC	5 cut(s)	397, 589, 610, 1097, 1258
LguI	GCTCTTC	1 cut(s)	1152
LmnI	GCTCC	1 cut(s)	1245
LweI	GCATC	1 cut(s)	982
MaeI	CTAG	5 cut(s)	330, 498, 644, 996, 1047
MaeIII	GTNAC	3 cut(s)	340, 548, 1197
MalI	GATC	5 cut(s)	399, 591, 612, 1099, 1260
MboI	GATC	5 cut(s)	397, 589, 610, 1097, 1258
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	751
MlsI	TGGCCA	1 cut(s)	1226
MluI	ACGCGT	1 cut(s)	1339
MluNI	TGGCCA	1 cut(s)	1226
Mly113I	GGCGCC	1 cut(s)	1287
MlyI	GAGTC	1 cut(s)	662
Mox20I	TGGCCA	1 cut(s)	1226
MscI	TGGCCA	1 cut(s)	1226
MseI	TTAA	4 cut(s)	783, 912, 942, 1148
MslI	CAYNNNNRTG	1 cut(s)	245
Msp20I	TGGCCA	1 cut(s)	1226
MspCI	CTTAAG	1 cut(s)	941
MspI	CCGG	5 cut(s)	134, 158, 188, 788, 883
MspR9I	CCNGG	6 cut(s)	158, 188, 788, 869, 883, 964
MvaI	CCWGG	2 cut(s)	869, 964
MvnI	CGCG	1 cut(s)	1341
MwoI	GCNNNNNNNGC	4 cut(s)	724, 733, 821, 992
NarI	GGCGCC	1 cut(s)	1287
NciI	CCSGG	4 cut(s)	158, 188, 788, 883
NdeII	GATC	5 cut(s)	397, 589, 610, 1097, 1258
NheI	GCTAGC	1 cut(s)	995
NlaIII	CATG	3 cut(s)	377, 776, 1090
NlaIV	GGNNCC	3 cut(s)	487, 530, 1288
NmuCI	GTSAC	2 cut(s)	548, 1197
NspI	RCATGY	2 cut(s)	377, 1090
PciSI	GCTCTTC	1 cut(s)	1152
PfeI	GAWTC	5 cut(s)	52, 350, 389, 452, 701
PflFI	GACNNNGTC	1 cut(s)	472
PflMI	CCANNNNNTGG	1 cut(s)	982
PkrI	GCNGC	1 cut(s)	47
PleI	GAGTC	1 cut(s)	662
PluTI	GGCGCC	1 cut(s)	1290
PpsI	GAGTC	1 cut(s)	662
Psp6I	CCWGG	2 cut(s)	867, 962
PspGI	CCWGG	2 cut(s)	867, 962
PspN4I	GGNNCC	3 cut(s)	487, 530, 1288
PspPI	GGNCC	1 cut(s)	1268
PsuI	RGATCY	1 cut(s)	397
PsyI	GACNNNGTC	1 cut(s)	472
RsaI	GTAC	4 cut(s)	65, 530, 1328, 1338
RsaNI	GTAC	4 cut(s)	64, 529, 1327, 1337
RseI	CAYNNNNRTG	1 cut(s)	245
SapI	GCTCTTC	1 cut(s)	1152
SaqAI	TTAA	4 cut(s)	783, 912, 942, 1148
SatI	GCNGC	1 cut(s)	46
Sau3AI	GATC	5 cut(s)	397, 589, 610, 1097, 1258
Sau96I	GGNCC	1 cut(s)	1268
SchI	GAGTC	1 cut(s)	662
ScrFI	CCNGG	6 cut(s)	158, 188, 788, 869, 883, 964
SduI	GDGCHC	1 cut(s)	751
SfaNI	GCATC	1 cut(s)	982
SfcI	CTRYAG	1 cut(s)	742
SfoI	GGCGCC	1 cut(s)	1288
SinI	GGWCC	1 cut(s)	1268
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	2 cut(s)	614, 941
SmoI	CTYRAG	2 cut(s)	614, 941
SsiI	CCGC	1 cut(s)	46
SspDI	GGCGCC	1 cut(s)	1286
SspMI	CTAG	5 cut(s)	330, 498, 644, 996, 1047
StyD4I	CCNGG	6 cut(s)	156, 186, 786, 867, 881, 962
TaaI	ACNGT	7 cut(s)	548, 587, 746, 838, 1153, 1170, 1240
TaqI	TCGA	4 cut(s)	408, 594, 671, 926
TatI	WGTACW	1 cut(s)	1326
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	5 cut(s)	52, 350, 389, 452, 701
Tru1I	TTAA	4 cut(s)	783, 912, 942, 1148
Tru9I	TTAA	4 cut(s)	783, 912, 942, 1148
TscAI	CASTG	7 cut(s)	312, 553, 592, 631, 751, 1072, 1270
TseFI	GTSAC	2 cut(s)	548, 1197
Tsp45I	GTSAC	2 cut(s)	548, 1197
TspGWI	ACGGA	3 cut(s)	410, 1110, 1207
TspRI	CASTG	7 cut(s)	312, 553, 592, 631, 751, 1072, 1270
Tth111I	GACNNNGTC	1 cut(s)	472
Van91I	CCANNNNNTGG	1 cut(s)	982
Vha464I	CTTAAG	1 cut(s)	941
VpaK11BI	GGWCC	1 cut(s)	1268
XapI	RAATTY	2 cut(s)	859, 967
XceI	RCATGY	2 cut(s)	377, 1090
XmiI	GTMKAC	1 cut(s)	666
XspI	CTAG	5 cut(s)	330, 498, 644, 996, 1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.