Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003544

Physical Location & Seq

Genomic Coordinates Reverse (-)

17719659 .. 17721606

Gene Structure 1948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G44040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGGTTGCTTACTTGGTTGCTTCGGTCGTCGGAAGAATCGTCGCCGTCAGAGACGCAGAGAATCTTTTCAGCCACGTTTAAACAGAATCTCTGAGGAAGCTGCAAAGGATGTTCTTTTGAATCTTAGGGTTCCTACTGTTGAAGAAGTCCCAAAGTATGCAAAAGATTCAACTGTTATGGAAGTCCCTAAAATCTCGGAGGTGTCTCCAAAGGATAATCATGTGAACGTTGTTGAGAAAGTCCCTACAGTTTCTGTAACTCCGATCACTGATATCTGTGACAAGGTTGAGGAGAAACAGAGTCCGAGTCCAAGTCCAAATCGTAAGAGAGTAACTTTTGACACCAATGTTAAAACATATGAACACATTGCAGTAGATGAATCTGTTGAGCTCTTTGAAGAGAAGAAAGAAGAGGTGAAGTCGAGGCAGGCTCGATGTTCGTCTGAAGGGAGCGATGTTACTTCTAACTCGTCAGGGTCTTATCCTTCTAACCATAGATATCAGAATTGCAGAGAGAGTGATGATGAAGAGGAGGATGTAACGGATTGTGACGATAGCGATCTTGAGGATACTGATGATGATGATTGTGGGCTGCTAGATGATGACTATTATAATGATGACAATTATGAGGACAAGCTGCACAACTGGGATAAAGTAGTTTATACGGAGGAGATTGCGGATAATGTTATGGATATAGAGAGGGTTGAAGAAAAGGGTAGTGTGAGTGTTAGAGACAGAAGTGGATATGTCAATGCAGTACTGAACCCGATTGAGAATCTTTCCCAATGGAAAGCTGTGAAAGCCAAAGGAAGAACAACAACTCAAACACAGCCTCGGAAGGAGAATGTGATAATTGCTTCCTTCAGCTTGGAGTCTCAGGTTGATGATTTATCATCAACATTCAGCTTGAACCGGAAATCAAGAGATGAAACTGAGAAACAGAGAACTCAAGAAATAGCTGTTGATGCTAGTCTTTCAACTTGGTTATCCACATCACAAACCACGACCAGCGGTTGTAGCAGTGTTGAAACCACAATGTCCGAGAAGAAGAAATACTCGAAACTGGTTCAATGCCATGATGAAAGACCTATATTGGGCGCGTTAACTGCAGAGGAGATAAAGCAGTTCTCAGCTACGAATTCGCCAAGGAAATCGCCAAGTAGAAGCCCTGAATCACCGATAATTGGAACAGTTGGTGGTTACTGGAACAGTCACTCAATGGCAACGAACAAGTACAGTCGAAGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

416

Amino Acids

47.05

Weight (kDa)

5.04

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04030 AT1G04030 AT5G44040
fragaria_vesca	FvH4_2g20800 FvH4_2g20800
malus_domestica	MD05G1191900.v1.1 MD10G1178600.v1.1 MD10G1178700.v1.1
prunus_persica	Prupe.8G218000_v2.0.a1 Prupe.8G218000_v2.0.a1
pyrus_communis	pycom05g17880 pycom10g15500
rosa_chinensis	RchiOBHm_Chr0c16g0499811 RchiOBHm_Chr6g0287131 RchiOBHm_Chr6g0287181
rosa_laevigata	RLG00000012518
rosa_multiflora	Rmu_sc0005297.1_g000021
rosa_roxburghii	Rroxscaffold_7G00181680
rosa_rugosa	Rorug06G0185800 Rorug06G0185900 Rorug06G0185900
rosa_samantha	Rh6AG297200 Rh6BG302400 Rh6CG307500 Rh6CG309500 Rh6CG309800 Rh6CG310000 Rh6CG310400 Rh6CG310600 Rh6DG293100 Rh6DG293400 Rh6DG293600 Rh6DG294000 Rh6DG294300
rosa_wichuraiana	Rw6G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	612
AccII	CGCG	1 cut(s)	1100
AciI	CCGC	2 cut(s)	677, 1011
AclI	AACGTT	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	1138
AcuI	CTGAAG	2 cut(s)	465, 847
AfaI	GTAC	2 cut(s)	759, 1235
AfiI	CCNNNNNNNGG	2 cut(s)	1094, 1184
AgsI	TTSAA	9 cut(s)	121, 143, 171, 398, 707, 910, 978, 1028, 1070
AluBI	AGCT	8 cut(s)	101, 391, 637, 794, 867, 906, 959, 1133
AluI	AGCT	8 cut(s)	101, 391, 637, 794, 867, 906, 959, 1133
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	4 cut(s)	46, 210, 726, 879
AlwNI	CAGNNNCTG	1 cut(s)	254
ApeKI	GCWGC	3 cut(s)	101, 592, 637
ApoI	RAATTY	1 cut(s)	1138
Asp700I	GAANNNNTTC	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	1100
AsuHPI	GGTGA	2 cut(s)	427, 1167
BanII	GRGCYC	1 cut(s)	393
BarI	GAAGNNNNNNTAC	2 cut(s)	1037, 1069
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	3 cut(s)	88, 579, 624
BceAI	ACGGC	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	562
BcoDI	GTCTC	4 cut(s)	46, 210, 726, 879
BfaI	CTAG	2 cut(s)	596, 969
BfmI	CTRYAG	2 cut(s)	246, 1107
BfuI	GTATCC	1 cut(s)	562
BisI	GCNGC	3 cut(s)	102, 593, 638
BlsI	GCNGC	3 cut(s)	103, 594, 639
BmcAI	AGTACT	1 cut(s)	759
BmiI	GGNNCC	1 cut(s)	132
BmrI	ACTGGG	1 cut(s)	655
BmsI	GCATC	1 cut(s)	955
BmuI	ACTGGG	1 cut(s)	655
BplI	GAGNNNNNCTC	2 cut(s)	415, 447
BpuEI	CTTGAG	2 cut(s)	584, 933
BsaBI	GATNNNNATC	1 cut(s)	558
BsaJI	CCNNGG	2 cut(s)	833, 1145
BsaWI	WCCGGW	1 cut(s)	912
Bsc4I	CCNNNNNNNGG	2 cut(s)	1094, 1184
Bse1I	ACTGG	3 cut(s)	650, 1068, 1208
Bse3DI	GCAATG	1 cut(s)	366
Bse8I	GATNNNNATC	1 cut(s)	558
BseDI	CCNNGG	2 cut(s)	833, 1145
BseGI	GGATG	2 cut(s)	115, 541
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	2 cut(s)	1094, 1184
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	4 cut(s)	84, 890, 924, 1143
BseNI	ACTGG	3 cut(s)	650, 1068, 1208
BseRI	GAGGAG	4 cut(s)	305, 545, 683, 1127
BseXI	GCAGC	3 cut(s)	88, 579, 624
BsgI	GTGCAG	1 cut(s)	623
Bsh1236I	CGCG	1 cut(s)	1100
Bsh1285I	CGRYCG	1 cut(s)	28
BsiEI	CGRYCG	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	913
BslFI	GGGAC	3 cut(s)	134, 170, 227
BslI	CCNNNNNNNGG	2 cut(s)	1094, 1184
BsmAI	GTCTC	4 cut(s)	46, 210, 726, 879
BsmBI	CGTCTC	1 cut(s)	46
BsmFI	GGGAC	3 cut(s)	134, 170, 227
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	2 cut(s)	264, 559
BspACI	CCGC	2 cut(s)	677, 1011
BspCNI	CTCAG	4 cut(s)	85, 889, 925, 1142
BspFNI	CGCG	1 cut(s)	1100
BspLI	GGNNCC	1 cut(s)	132
BspMAI	CTGCAG	1 cut(s)	1111
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	3 cut(s)	650, 1068, 1208
BssECI	CCNNGG	2 cut(s)	833, 1145
BssMI	GATC	2 cut(s)	264, 559
BssT1I	CCWWGG	1 cut(s)	1145
Bst4CI	ACNGT	6 cut(s)	139, 175, 250, 1192, 1211, 1238
Bst6I	CTCTTC	3 cut(s)	393, 405, 522
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	6 cut(s)	93, 125, 876, 933, 1129, 1248
BstF5I	GGATG	2 cut(s)	115, 541
BstFNI	CGCG	1 cut(s)	1100
BstHHI	GCGC	1 cut(s)	1100
BstKTI	GATC	2 cut(s)	267, 562
BstMAI	GTCTC	4 cut(s)	46, 210, 726, 879
BstMBI	GATC	2 cut(s)	264, 559
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	4 cut(s)	800, 965, 1017, 1106
BstSFI	CTRYAG	2 cut(s)	246, 1107
BstUI	CGCG	1 cut(s)	1100
BstV1I	GCAGC	3 cut(s)	88, 579, 624
BsuI	GTATCC	1 cut(s)	562
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	2 cut(s)	115, 541
BtsI	GCAGTG	1 cut(s)	1027
BtsIMutI	CAGTG	2 cut(s)	267, 1027
Cac8I	GCNNGC	1 cut(s)	429
CaiI	CAGNNNCTG	1 cut(s)	254
CfoI	GCGC	1 cut(s)	1100
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	758, 1234
CviAII	CATG	2 cut(s)	221, 1076
CviQI	GTAC	2 cut(s)	758, 1234
DdeI	CTNAG	6 cut(s)	93, 125, 876, 933, 1129, 1248
DpnI	GATC	2 cut(s)	266, 561
DpnII	GATC	2 cut(s)	264, 559
DraI	TTTAAA	1 cut(s)	81
Eam1104I	CTCTTC	3 cut(s)	393, 405, 522
EarI	CTCTTC	3 cut(s)	393, 405, 522
Ecl136II	GAGCTC	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	1145
Eco24I	GRGCYC	1 cut(s)	393
Eco32I	GATATC	2 cut(s)	274, 500
Eco53kI	GAGCTC	1 cut(s)	391
Eco57I	CTGAAG	2 cut(s)	465, 847
EcoICRI	GAGCTC	1 cut(s)	391
EcoRI	GAATTC	1 cut(s)	1138
EcoRV	GATATC	2 cut(s)	274, 500
EcoT14I	CCWWGG	1 cut(s)	1145
EcoT38I	GRGCYC	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	1145
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	2 cut(s)	224, 1079
FaqI	GGGAC	3 cut(s)	134, 170, 227
FatI	CATG	2 cut(s)	220, 1075
FauNDI	CATATG	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	102, 593, 638
FokI	GGATG	2 cut(s)	122, 548
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	3 cut(s)	102, 593, 638
FspBI	CTAG	2 cut(s)	596, 969
GlaI	GCGC	1 cut(s)	1099
GluI	GCNGC	3 cut(s)	102, 593, 638
HapII	CCGG	1 cut(s)	913
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	1 cut(s)	1100
Hin1II	CATG	2 cut(s)	224, 1079
Hin6I	GCGC	1 cut(s)	1098
HinP1I	GCGC	1 cut(s)	1098
HincII	GTYRAC	1 cut(s)	1104
HindII	GTYRAC	1 cut(s)	1104
HpaI	GTTAAC	1 cut(s)	1104
HpaII	CCGG	1 cut(s)	913
HphI	GGTGA	2 cut(s)	427, 1167
Hpy166II	GTNNAC	2 cut(s)	226, 1104
Hpy188III	TCNNGA	3 cut(s)	563, 921, 950
Hpy8I	GTNNAC	2 cut(s)	226, 1104
Hpy99I	CGWCG	2 cut(s)	33, 45
HpyAV	CCTTC	4 cut(s)	440, 495, 832, 871
HpyCH4III	ACNGT	6 cut(s)	139, 175, 250, 1192, 1211, 1238
HpyCH4IV	ACGT	2 cut(s)	76, 228
HpyCH4V	TGCA	7 cut(s)	104, 161, 371, 510, 640, 755, 1109
HpyF10VI	GCNNNNNNNGC	4 cut(s)	800, 965, 1017, 1106
HpyF3I	CTNAG	6 cut(s)	93, 125, 876, 933, 1129, 1248
HpySE526I	ACGT	2 cut(s)	76, 228
Hsp92II	CATG	2 cut(s)	224, 1079
HspAI	GCGC	1 cut(s)	1098
KspAI	GTTAAC	1 cut(s)	1104
Kzo9I	GATC	2 cut(s)	264, 559
LmnI	GCTCC	1 cut(s)	450
LpnPI	CCDG	9 cut(s)	413, 459, 631, 863, 926, 1021, 1049, 1182, 1189
Lsp1109I	GCAGC	3 cut(s)	88, 579, 624
LweI	GCATC	1 cut(s)	955
MaeI	CTAG	2 cut(s)	596, 969
MaeII	ACGT	2 cut(s)	76, 228
MaeIII	GTNAC	8 cut(s)	256, 278, 331, 457, 538, 548, 1199, 1211
MalI	GATC	2 cut(s)	266, 561
MboI	GATC	2 cut(s)	264, 559
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	5 cut(s)	505, 622, 852, 1138, 1182
MlyI	GAGTC	3 cut(s)	310, 316, 881
MmeI	TCCRAC	1 cut(s)	11
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	3 cut(s)	80, 351, 1103
MspA1I	CMGCKG	1 cut(s)	1011
MspI	CCGG	1 cut(s)	913
MssI	GTTTAAAC	1 cut(s)	81
MvnI	CGCG	1 cut(s)	1100
MwoI	GCNNNNNNNGC	4 cut(s)	800, 965, 1017, 1106
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	2 cut(s)	264, 559
NlaIII	CATG	2 cut(s)	224, 1079
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	3 cut(s)	278, 548, 1211
PcsI	WCGNNNNNNNCGW	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	8 cut(s)	37, 62, 87, 121, 167, 380, 775, 1172
PkrI	GCNGC	3 cut(s)	103, 594, 639
PleI	GAGTC	3 cut(s)	309, 315, 880
PmeI	GTTTAAAC	1 cut(s)	81
PpsI	GAGTC	3 cut(s)	309, 315, 880
PsiI	TTATAA	1 cut(s)	612
Psp124BI	GAGCTC	1 cut(s)	393
Psp1406I	AACGTT	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	132
PstI	CTGCAG	1 cut(s)	1111
PstNI	CAGNNNCTG	1 cut(s)	254
RsaI	GTAC	2 cut(s)	759, 1235
RsaNI	GTAC	2 cut(s)	758, 1234
SacI	GAGCTC	1 cut(s)	393
SaqAI	TTAA	3 cut(s)	80, 351, 1103
SatI	GCNGC	3 cut(s)	102, 593, 638
Sau3AI	GATC	2 cut(s)	264, 559
ScaI	AGTACT	1 cut(s)	759
SchI	GAGTC	3 cut(s)	310, 316, 881
SduI	GDGCHC	1 cut(s)	393
SfaNI	GCATC	1 cut(s)	955
SfcI	CTRYAG	2 cut(s)	246, 1107
SmlI	CTYRAG	2 cut(s)	563, 948
SmoI	CTYRAG	2 cut(s)	563, 948
Sse9I	AATT	5 cut(s)	505, 622, 852, 1138, 1182
SsiI	CCGC	2 cut(s)	677, 1011
SspMI	CTAG	2 cut(s)	596, 969
SstI	GAGCTC	1 cut(s)	393
StyI	CCWWGG	1 cut(s)	1145
TaaI	ACNGT	6 cut(s)	139, 175, 250, 1192, 1211, 1238
TaiI	ACGT	2 cut(s)	79, 231
TaqI	TCGA	4 cut(s)	422, 433, 1058, 1240
TaqII	GACCGA	1 cut(s)	14
TasI	AATT	5 cut(s)	505, 622, 852, 1138, 1182
TatI	WGTACW	2 cut(s)	757, 1233
TfiI	GAWTC	8 cut(s)	37, 62, 87, 121, 167, 380, 775, 1172
Tru1I	TTAA	3 cut(s)	80, 351, 1103
Tru9I	TTAA	3 cut(s)	80, 351, 1103
TscAI	CASTG	2 cut(s)	274, 1027
TseFI	GTSAC	3 cut(s)	278, 548, 1211
TseI	GCWGC	3 cut(s)	101, 592, 637
Tsp45I	GTSAC	3 cut(s)	278, 548, 1211
TspDTI	ATGAA	5 cut(s)	375, 393, 540, 942, 1095
TspGWI	ACGGA	2 cut(s)	557, 680
TspRI	CASTG	2 cut(s)	274, 1027
XapI	RAATTY	1 cut(s)	1138
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	2 cut(s)	596, 969
ZrmI	AGTACT	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.