Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0003544

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCAATTGATGCTAGCCTGTCAAATTGGTTGGGTTCATCAGAAGCTACACTTGTTAACAAGACTAGCACAATATCTCTGGACACATCTATGCCTGAGAAAAGCATGTCCTATGGATTACCACACTCAGTAACAAGCCACGAAGATAGACCAATTTTAGGTGCATTAATAGTTGAAGAGCTGAGACAGTTTTCAGCTTCATCTTCACCGCGGAAGTCACCCAGTAGAAGCCCCGATGAGATGGCCATAATTGGGACTGTTGGGAGCTACTGGAATGATCACACTGGTCCTGCCAAGGGTTCTAGCGCCTCCTCTTACAAAGGAATACCAAACACGACCAGCAAGTACAGAGAGGTACGCGTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.1

Weight (kDa)

6.83

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04030 AT1G04030 AT5G44040
fragaria_vesca	FvH4_2g20800 FvH4_2g20800
malus_domestica	MD05G1191900.v1.1 MD10G1178600.v1.1 MD10G1178700.v1.1
prunus_persica	Prupe.8G218000_v2.0.a1 Prupe.8G218000_v2.0.a1
pyrus_communis	pycom05g17880 pycom10g15500
rosa_chinensis	RchiOBHm_Chr0c16g0499811 RchiOBHm_Chr6g0287131 RchiOBHm_Chr6g0287181
rosa_laevigata	RLG00000012518
rosa_multiflora	Rmu_sc0005297.1_g000021
rosa_roxburghii	Rroxscaffold_7G00181680
rosa_rugosa	Rorug06G0185800 Rorug06G0185900 Rorug06G0185900
rosa_samantha	Rh6AG297200 Rh6BG302400 Rh6CG307500 Rh6CG309500 Rh6CG309800 Rh6CG310000 Rh6CG310400 Rh6CG310600 Rh6DG293100 Rh6DG293400 Rh6DG293600 Rh6DG294000 Rh6DG294300
rosa_wichuraiana	Rw6G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	211, 360
AciI	CCGC	2 cut(s)	209, 211
AcoI	YGGCCR	1 cut(s)	243
AfaI	GTAC	2 cut(s)	347, 357
AfiI	CCNNNNNNNGG	3 cut(s)	158, 252, 296
AflIII	ACRYGT	1 cut(s)	358
AgsI	TTSAA	1 cut(s)	176
AluBI	AGCT	4 cut(s)	47, 181, 197, 267
AluI	AGCT	4 cut(s)	47, 181, 197, 267
Alw26I	GTCTC	1 cut(s)	178
AoxI	GGCC	1 cut(s)	243
AseI	ATTAAT	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	2 cut(s)	198, 210
AsuNHI	GCTAGC	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	287
BalI	TGGCCA	1 cut(s)	245
BccI	CCATC	1 cut(s)	235
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	3 cut(s)	15, 66, 303
BfoI	RGCGCY	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmrI	ACTGGG	1 cut(s)	216
BmtI	GCTAGC	1 cut(s)	18
BmuI	ACTGGG	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	209, 294
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 252, 296
Bse1I	ACTGG	3 cut(s)	222, 275, 289
BseDI	CCNNGG	2 cut(s)	209, 294
BseLI	CCNNNNNNNGG	3 cut(s)	158, 252, 296
BseMII	CTCAG	3 cut(s)	87, 141, 173
BseNI	ACTGG	3 cut(s)	222, 275, 289
BseRI	GAGGAG	1 cut(s)	301
Bsh1236I	CGCG	2 cut(s)	211, 360
BshFI	GGCC	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	3 cut(s)	158, 252, 296
BsmAI	GTCTC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	2 cut(s)	209, 211
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	3 cut(s)	88, 140, 174
BspFNI	CGCG	2 cut(s)	211, 360
BspOI	GCTAGC	1 cut(s)	18
BspQI	GCTCTTC	1 cut(s)	171
BsrI	ACTGG	3 cut(s)	222, 275, 289
BssECI	CCNNGG	2 cut(s)	209, 294
BssMI	GATC	1 cut(s)	277
BssT1I	CCWWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	189, 259
Bst6I	CTCTTC	1 cut(s)	171
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	3 cut(s)	96, 127, 182
BstDSI	CCRYGG	1 cut(s)	209
BstFNI	CGCG	2 cut(s)	211, 360
BstH2I	RGCGCY	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	109
BstUI	CGCG	2 cut(s)	211, 360
BsuRI	GGCC	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	16
CfoI	GCGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	287
Cfr42I	CCGCGG	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	346, 356
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	8 cut(s)	18, 47, 138, 181, 197, 231, 245, 267
CviKI_1	RGCY	8 cut(s)	18, 47, 138, 181, 197, 231, 245, 267
CviQI	GTAC	2 cut(s)	346, 356
DdeI	CTNAG	3 cut(s)	96, 127, 182
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	1 cut(s)	109
FaiI	YATR	4 cut(s)	92, 107, 114, 248
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	277
FspBI	CTAG	3 cut(s)	15, 66, 303
GlaI	GCGC	1 cut(s)	307
HaeII	RGCGCY	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HpaI	GTTAAC	1 cut(s)	58
HphI	GGTGA	2 cut(s)	198, 210
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	189, 259
HpyCH4V	TGCA	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	96, 127, 182
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	277
KspAI	GTTAAC	1 cut(s)	58
KspI	CCGCGG	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	277
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	8 cut(s)	32, 65, 108, 235, 256, 270, 303, 352
MaeI	CTAG	3 cut(s)	15, 66, 303
MaeIII	GTNAC	2 cut(s)	130, 216
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	3 cut(s)	155, 188, 195
MfeI	CAATTG	1 cut(s)	6
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	4 cut(s)	6, 25, 153, 249
MluI	ACGCGT	1 cut(s)	358
MluNI	TGGCCA	1 cut(s)	245
MnlI	CCTC	3 cut(s)	319, 322, 346
Mox20I	TGGCCA	1 cut(s)	245
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	3 cut(s)	57, 167, 367
MslI	CAYNNNNRTG	1 cut(s)	89
Msp20I	TGGCCA	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	211
MunI	CAATTG	1 cut(s)	6
MvnI	CGCG	2 cut(s)	211, 360
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	277
NheI	GCTAGC	1 cut(s)	14
NlaIII	CATG	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	216
NspI	RCATGY	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	171
PshBI	ATTAAT	1 cut(s)	167
PspPI	GGNCC	1 cut(s)	287
RsaI	GTAC	2 cut(s)	347, 357
RsaNI	GTAC	2 cut(s)	346, 356
RseI	CAYNNNNRTG	1 cut(s)	89
SacII	CCGCGG	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	57, 167, 367
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	1 cut(s)	287
SetI	ASST	6 cut(s)	49, 163, 183, 199, 269, 357
Sfr303I	CCGCGG	1 cut(s)	212
SgrBI	CCGCGG	1 cut(s)	212
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	4 cut(s)	6, 25, 153, 249
SsiI	CCGC	2 cut(s)	209, 211
SspMI	CTAG	3 cut(s)	15, 66, 303
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	189, 259
TasI	AATT	4 cut(s)	6, 25, 153, 249
TatI	WGTACW	1 cut(s)	345
Tru1I	TTAA	3 cut(s)	57, 167, 367
Tru9I	TTAA	3 cut(s)	57, 167, 367
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	216
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	2 cut(s)	27, 189
TspRI	CASTG	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	287
VspI	ATTAAT	1 cut(s)	167
XceI	RCATGY	1 cut(s)	109
XspI	CTAG	3 cut(s)	15, 66, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.