Rh6DG293400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003544
Physical Location & Seq
Reverse (-)
49309417 .. 49309722
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG293400.1

Sequence Viewer

Length: 225 bp
ATGGCCATAATTGGGACTGTTGGGAGCTACTGGAATGATCACACTGGTCCTGTCAAGGGTTCTGGCGCCTCCTCTTACAAAGGAATACCAAACACGACCAGCAAGTATAGAGAGGATAGAAGAGTCAACTGGCACTCTACCCCATTTGAGACACGGTTGGAAAGAGCTTTGAATAGAGGTGCTGCAGATGCTTACTCTTCTTCTCGTACGCCTCATGGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.14

Weight (kDa)

9.86

Isoelectric Point (pI)

20.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 2 cut(s) 12, 56
AgsI TTSAA 1 cut(s) 172
AluBI AGCT 2 cut(s) 27, 167
AluI AGCT 2 cut(s) 27, 167
Alw26I GTCTC 1 cut(s) 143
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 47
AvaII GGWCC 1 cut(s) 47
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 169
BclI TGATCA 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 143
BfmI CTRYAG 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 67
BmsI GCATC 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 66
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 56
Bse1I ACTGG 3 cut(s) 35, 49, 134
BseLI CCNNNNNNNGG 2 cut(s) 12, 56
BseNI ACTGG 3 cut(s) 35, 49, 134
BseRI GAGGAG 1 cut(s) 61
BseXI GCAGC 1 cut(s) 169
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 65
BsiWI CGTACG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 2 cut(s) 12, 56
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 37
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 65
BsrI ACTGG 3 cut(s) 35, 49, 134
BssMI GATC 1 cut(s) 37
BssNI GRCGYC 1 cut(s) 66
Bst4CI ACNGT 2 cut(s) 19, 156
Bst6I CTCTTC 2 cut(s) 115, 202
BstACI GRCGYC 1 cut(s) 66
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 1 cut(s) 40
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 169
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 42
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 207
CviAII CATG 1 cut(s) 215
CviJI RGCY 3 cut(s) 5, 27, 167
CviKI_1 RGCY 3 cut(s) 5, 27, 167
CviQI GTAC 1 cut(s) 207
DinI GGCGCC 1 cut(s) 67
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 115, 202
EarI CTCTTC 2 cut(s) 115, 202
Eco47I GGWCC 1 cut(s) 47
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
FaeI CATG 1 cut(s) 218
FaiI YATR 3 cut(s) 8, 108, 216
FaqI GGGAC 1 cut(s) 28
FatI CATG 1 cut(s) 214
FbaI TGATCA 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 183
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 183
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 1 cut(s) 218
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 1 cut(s) 123
Hpy166II GTNNAC 1 cut(s) 127
Hpy8I GTNNAC 1 cut(s) 127
HpyCH4III ACNGT 2 cut(s) 19, 156
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 1 cut(s) 218
HspAI GCGC 1 cut(s) 66
KasI GGCGCC 1 cut(s) 65
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 6 cut(s) 16, 30, 48, 63, 112, 115
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 178
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 3 cut(s) 132, 189, 192
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 9
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 66
MlyI GAGTC 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 5 cut(s) 79, 82, 106, 170, 222
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 1 cut(s) 188
NarI GGCGCC 1 cut(s) 66
NdeII GATC 1 cut(s) 37
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 1 cut(s) 67
Pfl23II CGTACG 1 cut(s) 206
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 1 cut(s) 131
PluTI GGCGCC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 131
PspLI CGTACG 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 1 cut(s) 47
PstI CTGCAG 1 cut(s) 187
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 1 cut(s) 132
SetI ASST 3 cut(s) 29, 169, 181
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 183
SfoI GGCGCC 1 cut(s) 67
SinI GGWCC 1 cut(s) 47
Sse9I AATT 1 cut(s) 9
SspDI GGCGCC 1 cut(s) 65
TaaI ACNGT 2 cut(s) 19, 156
TasI AATT 1 cut(s) 9
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 182
TspRI CASTG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.