Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003544

Physical Location & Seq

Genomic Coordinates Reverse (-)

19902823 .. 19905303

Gene Structure 2481 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G218000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGGTTGCTTTCTTGCATGTTTTGGTTCTTCCAAAGACAAAAAACGCAGGATACAGAGGTACAGGGTTCAGCACCGTGACCATAGATATACAAGTTTCGAGCCTGTTCAATCTGCAGTCTCTTTTGTATCGGAGGTTCAGGAAACTCCTATTAGCCCCGTATTGGAAGAAGTCCGGGATAAGCCAGTGGAGCAACTGAGCTTAAATGCTAGAAAGAAAGTAACTTTTGATTCTAATGTCAAAACCTACGAGCATGTCCCAAGCAACGAGACCTCGGATCCTTTATTGGATACTGAAGAGAGTAGGAAGAAGGAAGAGGGGAAGATTTTGGAAAAACCATGCCAATCCAAGTCTTCCTCTGACGATAGTTCGATCACTTCGAGCTCAGGGTCATACCCTCCTAATCATAGGTACCAGAATTGCAGGGATAGTGATGATGAAGATGAACCATTAGACTCTGAAGACAGTGATCTTGATGATGAAGATGAGGATGATTACTATGACGATGATGGGGAACTAGAGTACGAAGATGAAATTGTAGAATCGAATAAAGGGGTTTCTATACCTCAGATAAGTACCGAGGATTTTGATAGTCCAATGCCAATAAAACCAACTGGTTTGAACCACAATGCACGTGATAGGAGTGGTTATGTTCATTCCGTGCTAAACCCTGTTGAAAATCTTACACAGTGGAAAGCTGTCAAAGCCAAAGGGACATCACTAATGAAGCCTCAGAAAGAGAATTTCACACTGGATCAAGAGCCCCGGATTTCATTCAGTTCGGAACCAAGTTTGAGCTTCAAATCCAAAGCTGATCAACACAAGAAGCATTCGAAGAATCCTCACCAAGAAGTGGCAGTTGATGCTAGCCTCTCAAACTGGTTGGTTTCATCAGAACATACACCTGTTAACAAGACTAGCACAATTGCTTTGGACACTGGCACACCCGAGAAAAGCATGTCCCACGGATCAAACTCAGCGAGAAGCCAAGAAGATAGACCAATTTTAGGTGCATTAACTGTTGAAGAGCTCAGACAGTTTTCAGCTTCCTCTTCACCAAGGAAGTCGCCAACTAGAAGTCCCAACGAGATGCCCATAATAGGGACTGTTGGAACCTACTGGAATCACTCAGCTCCTCCTGCCAAGGGTTCTTCTGGTGCTTCTTCTTACAAAGGAATACCAAATACCACCAGCAAATACAGAGAGGATAAAAGAGTGAATTGGCATTCTACCCCATTTGAGACAAGGTTGGAAAGGGCTTTGAATAGAGGGGGTGCTGCTGAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

430

Amino Acids

47.97

Weight (kDa)

5.32

Isoelectric Point (pI)

52.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04030 AT1G04030 AT5G44040
fragaria_vesca	FvH4_2g20800 FvH4_2g20800
malus_domestica	MD05G1191900.v1.1 MD10G1178600.v1.1 MD10G1178700.v1.1
prunus_persica	Prupe.8G218000_v2.0.a1 Prupe.8G218000_v2.0.a1
pyrus_communis	pycom05g17880 pycom10g15500
rosa_chinensis	RchiOBHm_Chr0c16g0499811 RchiOBHm_Chr6g0287131 RchiOBHm_Chr6g0287181
rosa_laevigata	RLG00000012518
rosa_multiflora	Rmu_sc0005297.1_g000021
rosa_roxburghii	Rroxscaffold_7G00181680
rosa_rugosa	Rorug06G0185800 Rorug06G0185900 Rorug06G0185900
rosa_samantha	Rh6AG297200 Rh6BG302400 Rh6CG307500 Rh6CG309500 Rh6CG309800 Rh6CG310000 Rh6CG310400 Rh6CG310600 Rh6DG293100 Rh6DG293400 Rh6DG293600 Rh6DG294000 Rh6DG294300
rosa_wichuraiana	Rw6G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	411
AccB1I	GGYRCC	1 cut(s)	411
AccB7I	CCANNNNNTGG	1 cut(s)	853
AclWI	GGATC	4 cut(s)	272, 285, 762, 976
AcsI	RAATTY	1 cut(s)	742
AcuI	CTGAAG	2 cut(s)	315, 480
AcvI	CACGTG	1 cut(s)	635
AfaI	GTAC	4 cut(s)	62, 413, 524, 577
AfiI	CCNNNNNNNGG	6 cut(s)	163, 853, 1007, 1100, 1101, 1145
AgsI	TTSAA	6 cut(s)	110, 622, 677, 802, 1025, 1264
AluBI	AGCT	9 cut(s)	201, 384, 698, 798, 812, 1030, 1046, 1133, 1286
AluI	AGCT	9 cut(s)	201, 384, 698, 798, 812, 1030, 1046, 1133, 1286
Alw21I	GWGCWC	2 cut(s)	386, 1032
Alw26I	GTCTC	3 cut(s)	124, 263, 1235
AlwI	GGATC	4 cut(s)	272, 285, 762, 976
Ama87I	CYCGRG	1 cut(s)	947
ApeKI	GCWGC	1 cut(s)	1277
ApoI	RAATTY	1 cut(s)	742
Asp718I	GGTACC	1 cut(s)	411
AsuC2I	CCSGG	2 cut(s)	176, 766
AsuHPI	GGTGA	2 cut(s)	836, 1047
AsuII	TTCGAA	1 cut(s)	833
AsuNHI	GCTAGC	1 cut(s)	866
AvaI	CYCGRG	1 cut(s)	947
BaeI	ACNNNNGTAYC	2 cut(s)	44, 77
BamHI	GGATCC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	411
BanII	GRGCYC	3 cut(s)	386, 765, 1032
BbrPI	CACGTG	1 cut(s)	635
BbsI	GAAGAC	2 cut(s)	345, 468
Bbv12I	GWGCWC	2 cut(s)	386, 1032
BbvI	GCAGC	1 cut(s)	1264
BccI	CCATC	1 cut(s)	503
BciVI	GTATCC	2 cut(s)	45, 283
BclI	TGATCA	1 cut(s)	814
BcnI	CCSGG	2 cut(s)	176, 766
BcoDI	GTCTC	3 cut(s)	124, 263, 1235
BfaI	CTAG	5 cut(s)	210, 518, 867, 918, 1074
BfmI	CTRYAG	1 cut(s)	114
BfuI	GTATCC	2 cut(s)	45, 283
BisI	GCNGC	1 cut(s)	1278
BlsI	GCNGC	1 cut(s)	1279
Bme1390I	CCNGG	2 cut(s)	176, 766
BmeT110I	CYCGRG	1 cut(s)	947
BmiI	GGNNCC	4 cut(s)	279, 413, 786, 1114
BmrFI	CCNGG	2 cut(s)	176, 766
BmsI	GCATC	2 cut(s)	853, 1080
BmtI	GCTAGC	1 cut(s)	870
BpiI	GAAGAC	2 cut(s)	345, 468
Bpu10I	CCTNAGC	1 cut(s)	385
Bpu14I	TTCGAA	1 cut(s)	833
BpuMI	CCSGG	2 cut(s)	176, 766
BsaAI	YACGTR	1 cut(s)	635
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	6 cut(s)	273, 579, 764, 964, 1058, 1143
Bsc4I	CCNNNNNNNGG	6 cut(s)	163, 853, 1007, 1100, 1101, 1145
Bse1I	ACTGG	6 cut(s)	185, 619, 756, 884, 943, 1124
BseDI	CCNNGG	6 cut(s)	273, 579, 764, 964, 1058, 1143
BseGI	GGATG	1 cut(s)	496
BseLI	CCNNNNNNNGG	6 cut(s)	163, 853, 1007, 1100, 1101, 1145
BseMII	CTCAG	7 cut(s)	188, 399, 581, 746, 990, 1045, 1143
BseNI	ACTGG	6 cut(s)	185, 619, 756, 884, 943, 1124
BseRI	GAGGAG	1 cut(s)	1125
BseXI	GCAGC	1 cut(s)	1264
BshNI	GGYRCC	1 cut(s)	411
BsiHKAI	GWGCWC	2 cut(s)	386, 1032
BsiHKCI	CYCGRG	1 cut(s)	947
BsiSI	CCGG	2 cut(s)	175, 766
BslFI	GGGAC	5 cut(s)	242, 727, 946, 1065, 1117
BslI	CCNNNNNNNGG	6 cut(s)	163, 853, 1007, 1100, 1101, 1145
BsmAI	GTCTC	3 cut(s)	124, 263, 1235
BsmFI	GGGAC	5 cut(s)	242, 727, 946, 1065, 1117
BsmI	GAATGC	2 cut(s)	829, 1225
Bso31I	GGTCTC	1 cut(s)	263
BsoBI	CYCGRG	1 cut(s)	947
Bsp119I	TTCGAA	1 cut(s)	833
Bsp1286I	GDGCHC	3 cut(s)	386, 765, 1032
Bsp143I	GATC	6 cut(s)	277, 372, 469, 754, 814, 968
BspCNI	CTCAG	7 cut(s)	189, 398, 580, 745, 989, 1044, 1142
BspLI	GGNNCC	4 cut(s)	279, 413, 786, 1114
BspMAI	CTGCAG	1 cut(s)	118
BspOI	GCTAGC	1 cut(s)	870
BspPI	GGATC	4 cut(s)	272, 285, 762, 976
BspQI	GCTCTTC	1 cut(s)	1020
BspT104I	TTCGAA	1 cut(s)	833
BspT107I	GGYRCC	1 cut(s)	411
BspTNI	GGTCTC	1 cut(s)	263
BsrI	ACTGG	6 cut(s)	185, 619, 756, 884, 943, 1124
BssECI	CCNNGG	6 cut(s)	273, 579, 764, 964, 1058, 1143
BssMI	GATC	6 cut(s)	277, 372, 469, 754, 814, 968
BssT1I	CCWWGG	2 cut(s)	1058, 1143
Bst4CI	ACNGT	6 cut(s)	77, 467, 690, 1021, 1038, 1108
Bst6I	CTCTTC	4 cut(s)	291, 309, 1020, 1057
BstAPI	GCANNNNNTGC	1 cut(s)	863
BstBAI	YACGTR	1 cut(s)	635
BstBI	TTCGAA	1 cut(s)	833
BstC8I	GCNNGC	1 cut(s)	868
BstDEI	CTNAG	8 cut(s)	197, 385, 567, 732, 976, 1031, 1129, 1287
BstDSI	CCRYGG	1 cut(s)	964
BstF5I	GGATG	1 cut(s)	496
BstKTI	GATC	6 cut(s)	280, 375, 472, 757, 817, 971
BstMAI	GTCTC	3 cut(s)	124, 263, 1235
BstMBI	GATC	6 cut(s)	277, 372, 469, 754, 814, 968
BstMWI	GCNNNNNNNGC	5 cut(s)	190, 704, 863, 1139, 1283
BstNSI	RCATGY	3 cut(s)	21, 257, 961
BstSCI	CCNGG	2 cut(s)	174, 764
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	1264
BstV2I	GAAGAC	2 cut(s)	345, 468
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BsuI	GTATCC	2 cut(s)	45, 283
BtgI	CCRYGG	1 cut(s)	964
BtsCI	GGATG	1 cut(s)	496
BtsIMutI	CAGTG	5 cut(s)	192, 472, 695, 749, 936
Cac8I	GCNNGC	1 cut(s)	868
Csp6I	GTAC	4 cut(s)	61, 412, 523, 576
CviAII	CATG	4 cut(s)	18, 254, 339, 958
CviQI	GTAC	4 cut(s)	61, 412, 523, 576
DdeI	CTNAG	8 cut(s)	197, 385, 567, 732, 976, 1031, 1129, 1287
DpnI	GATC	6 cut(s)	279, 374, 471, 756, 816, 970
DpnII	GATC	6 cut(s)	277, 372, 469, 754, 814, 968
Eam1104I	CTCTTC	4 cut(s)	291, 309, 1020, 1057
EarI	CTCTTC	4 cut(s)	291, 309, 1020, 1057
Ecl136II	GAGCTC	2 cut(s)	384, 1030
Eco130I	CCWWGG	2 cut(s)	1058, 1143
Eco24I	GRGCYC	3 cut(s)	386, 765, 1032
Eco31I	GGTCTC	1 cut(s)	263
Eco53kI	GAGCTC	2 cut(s)	384, 1030
Eco57I	CTGAAG	2 cut(s)	315, 480
Eco72I	CACGTG	1 cut(s)	635
Eco88I	CYCGRG	1 cut(s)	947
EcoICRI	GAGCTC	2 cut(s)	384, 1030
EcoT14I	CCWWGG	2 cut(s)	1058, 1143
EcoT38I	GRGCYC	3 cut(s)	386, 765, 1032
ErhI	CCWWGG	2 cut(s)	1058, 1143
FaeI	CATG	4 cut(s)	21, 257, 342, 961
FaqI	GGGAC	5 cut(s)	242, 727, 946, 1065, 1117
FatI	CATG	4 cut(s)	17, 253, 338, 957
FbaI	TGATCA	1 cut(s)	814
Fnu4HI	GCNGC	1 cut(s)	1278
FokI	GGATG	1 cut(s)	503
FriOI	GRGCYC	3 cut(s)	386, 765, 1032
Fsp4HI	GCNGC	1 cut(s)	1278
FspBI	CTAG	5 cut(s)	210, 518, 867, 918, 1074
GluI	GCNGC	1 cut(s)	1278
HapII	CCGG	2 cut(s)	175, 766
Hin1II	CATG	4 cut(s)	21, 257, 342, 961
HincII	GTYRAC	1 cut(s)	910
HindII	GTYRAC	1 cut(s)	910
HindIII	AAGCTT	1 cut(s)	1284
HinfI	GANTC	5 cut(s)	230, 455, 542, 838, 1123
HpaI	GTTAAC	1 cut(s)	910
HpaII	CCGG	2 cut(s)	175, 766
HphI	GGTGA	2 cut(s)	836, 1047
Hpy166II	GTNNAC	1 cut(s)	910
Hpy188I	TCNGA	9 cut(s)	133, 277, 361, 460, 570, 735, 784, 895, 1034
Hpy188III	TCNNGA	3 cut(s)	140, 473, 758
Hpy8I	GTNNAC	1 cut(s)	910
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	6 cut(s)	77, 467, 690, 1021, 1038, 1108
HpyCH4IV	ACGT	1 cut(s)	634
HpyCH4V	TGCA	5 cut(s)	17, 116, 423, 632, 1013
HpyF10VI	GCNNNNNNNGC	5 cut(s)	190, 704, 863, 1139, 1283
HpyF3I	CTNAG	8 cut(s)	197, 385, 567, 732, 976, 1031, 1129, 1287
HpySE526I	ACGT	1 cut(s)	634
Hsp92II	CATG	4 cut(s)	21, 257, 342, 961
KpnI	GGTACC	1 cut(s)	415
Ksp22I	TGATCA	1 cut(s)	814
KspAI	GTTAAC	1 cut(s)	910
Kzo9I	GATC	6 cut(s)	277, 372, 469, 754, 814, 968
LguI	GCTCTTC	1 cut(s)	1020
LmnI	GCTCC	2 cut(s)	190, 1138
Lsp1109I	GCAGC	1 cut(s)	1264
LweI	GCATC	2 cut(s)	853, 1080
MaeI	CTAG	5 cut(s)	210, 518, 867, 918, 1074
MaeII	ACGT	1 cut(s)	634
MaeIII	GTNAC	2 cut(s)	77, 220
MalI	GATC	6 cut(s)	279, 374, 471, 756, 816, 970
MboI	GATC	6 cut(s)	277, 372, 469, 754, 814, 968
MfeI	CAATTG	1 cut(s)	924
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	3 cut(s)	386, 765, 1032
MluCI	AATT	6 cut(s)	418, 534, 742, 924, 1002, 1219
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	2 cut(s)	1090, 1230
MseI	TTAA	3 cut(s)	203, 909, 1016
MspI	CCGG	2 cut(s)	175, 766
MspR9I	CCNGG	2 cut(s)	176, 766
MunI	CAATTG	1 cut(s)	924
Mva1269I	GAATGC	2 cut(s)	829, 1225
MwoI	GCNNNNNNNGC	5 cut(s)	190, 704, 863, 1139, 1283
NciI	CCSGG	2 cut(s)	176, 766
NdeII	GATC	6 cut(s)	277, 372, 469, 754, 814, 968
NheI	GCTAGC	1 cut(s)	866
NlaIII	CATG	4 cut(s)	21, 257, 342, 961
NlaIV	GGNNCC	4 cut(s)	279, 413, 786, 1114
NmuCI	GTSAC	1 cut(s)	77
NspI	RCATGY	3 cut(s)	21, 257, 961
NspV	TTCGAA	1 cut(s)	833
PciSI	GCTCTTC	1 cut(s)	1020
PcsI	WCGNNNNNNNCGW	1 cut(s)	377
PctI	GAATGC	2 cut(s)	829, 1225
PfeI	GAWTC	4 cut(s)	230, 542, 838, 1123
PflMI	CCANNNNNTGG	1 cut(s)	853
PfoI	TCCNGGA	1 cut(s)	174
PkrI	GCNGC	1 cut(s)	1279
PleI	GAGTC	1 cut(s)	449
PmaCI	CACGTG	1 cut(s)	635
PmlI	CACGTG	1 cut(s)	635
PpsI	GAGTC	1 cut(s)	449
Ppu21I	YACGTR	1 cut(s)	635
Psp124BI	GAGCTC	2 cut(s)	386, 1032
PspCI	CACGTG	1 cut(s)	635
PspN4I	GGNNCC	4 cut(s)	279, 413, 786, 1114
PsrI	GAACNNNNNNTAC	2 cut(s)	120, 152
PstI	CTGCAG	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	4 cut(s)	62, 413, 524, 577
RsaNI	GTAC	4 cut(s)	61, 412, 523, 576
SacI	GAGCTC	2 cut(s)	386, 1032
SapI	GCTCTTC	1 cut(s)	1020
SaqAI	TTAA	3 cut(s)	203, 909, 1016
SatI	GCNGC	1 cut(s)	1278
Sau3AI	GATC	6 cut(s)	277, 372, 469, 754, 814, 968
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	2 cut(s)	176, 766
SduI	GDGCHC	3 cut(s)	386, 765, 1032
SfaNI	GCATC	2 cut(s)	853, 1080
SfcI	CTRYAG	1 cut(s)	114
SfuI	TTCGAA	1 cut(s)	833
Sse9I	AATT	6 cut(s)	418, 534, 742, 924, 1002, 1219
SspMI	CTAG	5 cut(s)	210, 518, 867, 918, 1074
SstI	GAGCTC	2 cut(s)	386, 1032
StyD4I	CCNGG	2 cut(s)	174, 764
StyI	CCWWGG	2 cut(s)	1058, 1143
TaaI	ACNGT	6 cut(s)	77, 467, 690, 1021, 1038, 1108
TaiI	ACGT	1 cut(s)	637
TaqI	TCGA	5 cut(s)	99, 371, 380, 545, 833
TasI	AATT	6 cut(s)	418, 534, 742, 924, 1002, 1219
TfiI	GAWTC	4 cut(s)	230, 542, 838, 1123
Tru1I	TTAA	3 cut(s)	203, 909, 1016
Tru9I	TTAA	3 cut(s)	203, 909, 1016
TscAI	CASTG	5 cut(s)	192, 472, 695, 756, 943
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	1 cut(s)	1277
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	8 cut(s)	453, 459, 495, 546, 644, 740, 762, 879
TspGWI	ACGGA	2 cut(s)	649, 981
TspRI	CASTG	5 cut(s)	192, 472, 695, 756, 943
Van91I	CCANNNNNTGG	1 cut(s)	853
XapI	RAATTY	1 cut(s)	742
XceI	RCATGY	3 cut(s)	21, 257, 961
XspI	CTAG	5 cut(s)	210, 518, 867, 918, 1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.