Rh6CG309500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003544
Physical Location & Seq
Reverse (-)
49202253 .. 49210436
8184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG309500.1

Sequence Viewer

Length: 684 bp
ATGAAGCCTCAGAAGGAGAATTTCACCCTGGATGATGAACGCCGGATTTCATTCAGTTCAGAGCCAAATATTAAGGAAGTATCATCGAGTTTCAAGTCACGTAAGAGGCAATCTGGTCAGGCCAGGAATTATAACCAAGATATGGCAGTTGATGCTAGCCTGTCAAATTGTTTGGGTTCATCAGAAGCTACACTTGTTAACAAGACTAGCACAATATCTCTGGACACGTCTATGCCTGAGAAAAGCATGTCCTACGGATTACCACACTCAGCAACAAGCCACGAAGATAGACCAATTTTAGGTGCATTAACAGTTGAAGAGCTGAGACAGTTTTCAACTTCATCTTCACCGCGGAAGTCACCCAGTAGAAGCCCTGATGAGATGGCCATAATTGGGACTGTTGGGAGCTACTGGAATGATCACACTGGTCCTGCCAAGGGTTCTGGCGCCTCCTCTTACAAAGGAATATCAAACACGACCAGCAAGTACAGAGAGGATAGAAGAGTCAACTGGCACTCTACCCCATTTGAGACACGGCTGGAAAGAGCTTTGAATAGAGGTGTTGCAGATGCTTACTCTTCTTCTCGTACGCCTCATGCTCCTTTTGAATTTCTTGTTGATTCTGCGGTGAGGACTAATGCTCGAATTGTGGAAGGGGATCCAGGTAAACTCGCCACAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

24.99

Weight (kDa)

8.96

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 446
AccB7I CCANNNNNTGG 1 cut(s) 142
AccII CGCG 1 cut(s) 352
AciI CCGC 3 cut(s) 350, 352, 626
AclWI GGATC 2 cut(s) 653, 666
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 2 cut(s) 19, 608
AcyI GRCGYC 1 cut(s) 447
AfaI GTAC 2 cut(s) 488, 589
AfiI CCNNNNNNNGG 4 cut(s) 142, 299, 393, 437
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 5 cut(s) 94, 317, 336, 553, 608
AjiI CACGTC 1 cut(s) 228
AjnI CCWGG 3 cut(s) 27, 122, 661
AluBI AGCT 4 cut(s) 188, 322, 408, 548
AluI AGCT 4 cut(s) 188, 322, 408, 548
Alw26I GTCTC 2 cut(s) 319, 524
AlwI GGATC 2 cut(s) 653, 666
AoxI GGCC 2 cut(s) 120, 384
ApoI RAATTY 2 cut(s) 19, 608
AspLEI GCGC 1 cut(s) 449
AspS9I GGNCC 1 cut(s) 428
AsuHPI GGTGA 4 cut(s) 16, 339, 351, 640
AsuNHI GCTAGC 1 cut(s) 155
AvaII GGWCC 1 cut(s) 428
BalI TGGCCA 1 cut(s) 386
BamHI GGATCC 1 cut(s) 658
BanI GGYRCC 1 cut(s) 446
BccI CCATC 1 cut(s) 376
BceAI ACGGC 1 cut(s) 551
BciT130I CCWGG 3 cut(s) 29, 124, 663
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 319, 524
BfaI CTAG 2 cut(s) 156, 207
BfoI RGCGCY 1 cut(s) 450
Bme1390I CCNGG 3 cut(s) 29, 124, 663
Bme18I GGWCC 1 cut(s) 428
BmgBI CACGTC 1 cut(s) 228
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 2 cut(s) 448, 660
BmrFI CCNGG 3 cut(s) 29, 124, 663
BmrI ACTGGG 1 cut(s) 357
BmsI GCATC 2 cut(s) 142, 559
BmtI GCTAGC 1 cut(s) 159
BmuI ACTGGG 1 cut(s) 357
BsaAI YACGTR 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 447
BsaJI CCNNGG 3 cut(s) 27, 350, 435
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 299, 393, 437
Bse1I ACTGG 4 cut(s) 363, 416, 430, 515
BseBI CCWGG 3 cut(s) 29, 124, 663
BseDI CCNNGG 3 cut(s) 27, 350, 435
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 4 cut(s) 142, 299, 393, 437
BseMII CTCAG 4 cut(s) 23, 228, 282, 314
BseNI ACTGG 4 cut(s) 363, 416, 430, 515
BseRI GAGGAG 1 cut(s) 442
Bsh1236I CGCG 1 cut(s) 352
BshFI GGCC 2 cut(s) 122, 386
BshNI GGYRCC 1 cut(s) 446
BsiSI CCGG 1 cut(s) 43
BsiWI CGTACG 1 cut(s) 587
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 4 cut(s) 142, 299, 393, 437
BsmAI GTCTC 2 cut(s) 319, 524
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 2 cut(s) 122, 386
Bsp143I GATC 2 cut(s) 418, 658
BspACI CCGC 3 cut(s) 350, 352, 626
BspANI GGCC 2 cut(s) 122, 386
BspCNI CTCAG 4 cut(s) 22, 229, 281, 315
BspFNI CGCG 1 cut(s) 352
BspLI GGNNCC 2 cut(s) 448, 660
BspOI GCTAGC 1 cut(s) 159
BspPI GGATC 2 cut(s) 653, 666
BspQI GCTCTTC 1 cut(s) 312
BspT107I GGYRCC 1 cut(s) 446
BsrI ACTGG 4 cut(s) 363, 416, 430, 515
BssECI CCNNGG 3 cut(s) 27, 350, 435
BssMI GATC 2 cut(s) 418, 658
BssNI GRCGYC 1 cut(s) 447
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 3 cut(s) 29, 124, 663
Bst4CI ACNGT 3 cut(s) 313, 330, 400
Bst6I CTCTTC 3 cut(s) 312, 496, 583
BstACI GRCGYC 1 cut(s) 447
BstAPI GCANNNNNTGC 1 cut(s) 152
BstBAI YACGTR 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 4 cut(s) 9, 237, 268, 323
BstDSI CCRYGG 1 cut(s) 350
BstF5I GGATG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 352
BstH2I RGCGCY 1 cut(s) 450
BstHHI GCGC 1 cut(s) 449
BstKTI GATC 2 cut(s) 421, 661
BstMAI GTCTC 2 cut(s) 319, 524
BstMBI GATC 2 cut(s) 418, 658
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 3 cut(s) 29, 124, 663
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 3 cut(s) 27, 122, 661
BstUI CGCG 1 cut(s) 352
BstX2I RGATCY 1 cut(s) 658
BstYI RGATCY 1 cut(s) 658
BsuRI GGCC 2 cut(s) 122, 386
BtgI CCRYGG 1 cut(s) 350
BtrI CACGTC 1 cut(s) 228
BtsCI GGATG 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 1 cut(s) 449
Cfr13I GGNCC 1 cut(s) 428
Cfr42I CCGCGG 1 cut(s) 353
Csp6I GTAC 2 cut(s) 487, 588
CviAII CATG 2 cut(s) 247, 596
CviQI GTAC 2 cut(s) 487, 588
DdeI CTNAG 4 cut(s) 9, 237, 268, 323
DinI GGCGCC 1 cut(s) 448
DpnI GATC 2 cut(s) 420, 660
DpnII GATC 2 cut(s) 418, 658
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 3 cut(s) 312, 496, 583
EarI CTCTTC 3 cut(s) 312, 496, 583
Eco130I CCWWGG 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 428
EcoRII CCWGG 3 cut(s) 27, 122, 661
EcoT14I CCWWGG 1 cut(s) 435
EgeI GGCGCC 1 cut(s) 448
EheI GGCGCC 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 2 cut(s) 250, 599
FaiI YATR 6 cut(s) 132, 143, 233, 248, 389, 597
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FaqI GGGAC 1 cut(s) 409
FatI CATG 2 cut(s) 246, 595
FbaI TGATCA 1 cut(s) 418
FokI GGATG 1 cut(s) 44
FspBI CTAG 2 cut(s) 156, 207
GlaI GCGC 1 cut(s) 448
HaeII RGCGCY 1 cut(s) 450
HaeIII GGCC 2 cut(s) 122, 386
HapII CCGG 1 cut(s) 43
HhaI GCGC 1 cut(s) 449
Hin1I GRCGYC 1 cut(s) 447
Hin1II CATG 2 cut(s) 250, 599
Hin6I GCGC 1 cut(s) 447
HinP1I GCGC 1 cut(s) 447
HincII GTYRAC 2 cut(s) 199, 508
HindII GTYRAC 2 cut(s) 199, 508
HinfI GANTC 2 cut(s) 504, 620
HpaI GTTAAC 1 cut(s) 199
HpaII CCGG 1 cut(s) 43
HphI GGTGA 4 cut(s) 16, 339, 351, 640
Hpy166II GTNNAC 3 cut(s) 199, 508, 668
Hpy188I TCNGA 3 cut(s) 12, 61, 184
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 3 cut(s) 199, 508, 668
HpyAV CCTTC 2 cut(s) 7, 647
HpyCH4III ACNGT 3 cut(s) 313, 330, 400
HpyCH4IV ACGT 2 cut(s) 100, 227
HpyCH4V TGCA 2 cut(s) 305, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 4 cut(s) 9, 237, 268, 323
HpySE526I ACGT 2 cut(s) 100, 227
Hsp92I GRCGYC 1 cut(s) 447
Hsp92II CATG 2 cut(s) 250, 599
HspAI GCGC 1 cut(s) 447
KasI GGCGCC 1 cut(s) 446
Ksp22I TGATCA 1 cut(s) 418
KspAI GTTAAC 1 cut(s) 199
KspI CCGCGG 1 cut(s) 353
Kzo9I GATC 2 cut(s) 418, 658
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 2 cut(s) 405, 604
LweI GCATC 2 cut(s) 142, 559
MaeI CTAG 2 cut(s) 156, 207
MaeII ACGT 2 cut(s) 100, 227
MaeIII GTNAC 2 cut(s) 96, 357
MalI GATC 2 cut(s) 420, 660
MboI GATC 2 cut(s) 418, 658
MboII GAAGA 6 cut(s) 296, 329, 336, 513, 570, 573
MflI RGATCY 1 cut(s) 658
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 7 cut(s) 19, 127, 166, 294, 390, 608, 645
MluNI TGGCCA 1 cut(s) 386
Mly113I GGCGCC 1 cut(s) 447
MlyI GAGTC 1 cut(s) 513
MnlI CCTC 8 cut(s) 18, 99, 460, 463, 487, 551, 603, 624
Mox20I TGGCCA 1 cut(s) 386
MscI TGGCCA 1 cut(s) 386
MseI TTAA 3 cut(s) 72, 198, 308
MslI CAYNNNNRTG 1 cut(s) 230
Msp20I TGGCCA 1 cut(s) 386
MspA1I CMGCKG 1 cut(s) 352
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 3 cut(s) 29, 124, 663
MvaI CCWGG 3 cut(s) 29, 124, 663
MvnI CGCG 1 cut(s) 352
MwoI GCNNNNNNNGC 1 cut(s) 152
NarI GGCGCC 1 cut(s) 447
NdeII GATC 2 cut(s) 418, 658
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 2 cut(s) 250, 599
NlaIV GGNNCC 2 cut(s) 448, 660
NmuCI GTSAC 2 cut(s) 96, 357
NspI RCATGY 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 620
Pfl23II CGTACG 1 cut(s) 587
PflMI CCANNNNNTGG 1 cut(s) 142
PleI GAGTC 1 cut(s) 512
PluTI GGCGCC 1 cut(s) 450
PpsI GAGTC 1 cut(s) 512
Ppu21I YACGTR 1 cut(s) 101
PsiI TTATAA 1 cut(s) 132
Psp6I CCWGG 3 cut(s) 27, 122, 661
PspGI CCWGG 3 cut(s) 27, 122, 661
PspLI CGTACG 1 cut(s) 587
PspN4I GGNNCC 2 cut(s) 448, 660
PspPI GGNCC 1 cut(s) 428
PsuI RGATCY 1 cut(s) 658
RsaI GTAC 2 cut(s) 488, 589
RsaNI GTAC 2 cut(s) 487, 588
RseI CAYNNNNRTG 1 cut(s) 230
SacII CCGCGG 1 cut(s) 353
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 3 cut(s) 72, 198, 308
Sau3AI GATC 2 cut(s) 418, 658
Sau96I GGNCC 1 cut(s) 428
SchI GAGTC 1 cut(s) 513
ScrFI CCNGG 3 cut(s) 29, 124, 663
SetI ASST 9 cut(s) 103, 190, 230, 304, 324, 410, 550, 562, 667
SfaNI GCATC 2 cut(s) 142, 559
SfoI GGCGCC 1 cut(s) 448
Sfr303I CCGCGG 1 cut(s) 353
SgrBI CCGCGG 1 cut(s) 353
SinI GGWCC 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 230
Sse9I AATT 7 cut(s) 19, 127, 166, 294, 390, 608, 645
SsiI CCGC 3 cut(s) 350, 352, 626
SspDI GGCGCC 1 cut(s) 446
SspI AATATT 1 cut(s) 70
SspMI CTAG 2 cut(s) 156, 207
StyD4I CCNGG 3 cut(s) 27, 122, 661
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 3 cut(s) 313, 330, 400
TaiI ACGT 2 cut(s) 103, 230
TaqI TCGA 2 cut(s) 86, 643
TasI AATT 7 cut(s) 19, 127, 166, 294, 390, 608, 645
TatI WGTACW 1 cut(s) 486
TfiI GAWTC 1 cut(s) 620
Tru1I TTAA 3 cut(s) 72, 198, 308
Tru9I TTAA 3 cut(s) 72, 198, 308
TscAI CASTG 1 cut(s) 430
TseFI GTSAC 2 cut(s) 96, 357
Tsp45I GTSAC 2 cut(s) 96, 357
TspDTI ATGAA 5 cut(s) 17, 39, 51, 168, 330
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 1 cut(s) 430
Van91I CCANNNNNTGG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 428
XapI RAATTY 2 cut(s) 19, 608
XceI RCATGY 1 cut(s) 250
XspI CTAG 2 cut(s) 156, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.