Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003544

Physical Location & Seq

Genomic Coordinates Reverse (-)

32017985 .. 32020181

Gene Structure 2197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1191900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGGTTGCTTTCTTGCATGTTTTGGTTCTTCCAAAGACAAAAACCGCAGGAGTAATCAGAGGTACAGGGTTCACCACAGAGACCATAGACATACAAGTTTCGGGCCTGTGAAATCTGCCGTCTCTTCTGCACCGGTGGTTGAGGAAAAACCTATTATCCCGGCATTGGAAGAAGTCCGGGATAAGCCAGTGGAGGAACTGAGCTTCAGTACTCGAAAGAAAGTTACTTTTGATTCGAATGTCAAGACCTATGAGCATGTTTCGACCAACGAAACCCCGGATCCTTTGTTGGATAGTGAAGAGAATGGGAAGGAGGAAGAGGAGGGGAAGAATTTGGAAAAACCGTGCCTATCTAAGTCTTCCTCTGAAGATAGTTCGGTCATTTCGAGCTCAGGGTCATATCCTCCTAGGCATAGGTACCAGAATTGCAGGGATAGCGATGATGAAGACGAAGCTTTAGACTATGATGAGGACTGTGATGTTGATGGTGAAGATGAGGATGATTACGATGACGATGAAGGGGAACTAGAGTACGAAGATGAAATTGTAGAATCAAACAGTGGGGTTTCTACACGTCAAGTAATGACTGAGGATTTTGATAGTCCAATGCCGATGAAACCAGCTGGGTTGGACCACAATGTGCGAGATAGGAGTGGTTATGTTCATTCGGTGCTAAACCCTGTTGAGAATCTTACACAATGGAAAGCTCTCAAAGCCAAAGGGACACCACTGATGAAACCTCAGAAAGAGAATTTCACACAGGATCAAGAACCCCGGATTTCGTTCAGTTCAGATCCAAGTTTGAGCTTCAAATTGAAAACTGATCAAGACAAGAAGCATTCAAAGGATTCCAACCAAGAAATGGCAGTTGATGCTAGCCTCTCGAACTGGTTGTTTTCATCAGAAAATACACCCGTTAACAAGGTCAGCACAACTGCTTTAGACACCTTCACGCCTGAGAAAAGCACGTCCCATGGATCAAACTCAGCGAGAAGCCATGAAGATCGACCAATTTTAGGTGCATTAACTGTTGAAGAGCTCAGACAGTTTTCAGCTTCGTCTTCACCAAGGAAGTCACCAAGTAGAAGCCCTGACGAGATGGCCATAATGGGGACTGTCGGAACCTACTGGAATCACATGGCTCCTCCTCCCGCTGCCAAGAGTTCGGGTGCCTCGTCTTACAAAGGAATACCAAACACAACCAGCAAATACAGAGAGGATAAAAGAGTGAATTGGCATTCTACCCCATTTGAGACGAGGTTGGAAAGAGCTTTGAACAGAGGAGGTGCTGCTGAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

434

Amino Acids

48.46

Weight (kDa)

5.03

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04030 AT1G04030 AT5G44040
fragaria_vesca	FvH4_2g20800 FvH4_2g20800
malus_domestica	MD05G1191900.v1.1 MD10G1178600.v1.1 MD10G1178700.v1.1
prunus_persica	Prupe.8G218000_v2.0.a1 Prupe.8G218000_v2.0.a1
pyrus_communis	pycom05g17880 pycom10g15500
rosa_chinensis	RchiOBHm_Chr0c16g0499811 RchiOBHm_Chr6g0287131 RchiOBHm_Chr6g0287181
rosa_laevigata	RLG00000012518
rosa_multiflora	Rmu_sc0005297.1_g000021
rosa_roxburghii	Rroxscaffold_7G00181680
rosa_rugosa	Rorug06G0185800 Rorug06G0185900 Rorug06G0185900
rosa_samantha	Rh6AG297200 Rh6BG302400 Rh6CG307500 Rh6CG309500 Rh6CG309800 Rh6CG310000 Rh6CG310400 Rh6CG310600 Rh6DG293100 Rh6DG293400 Rh6DG293600 Rh6DG294000 Rh6DG294300
rosa_wichuraiana	Rw6G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	417
AccB1I	GGYRCC	2 cut(s)	417, 1169
AccB7I	CCANNNNNTGG	1 cut(s)	862
AciI	CCGC	2 cut(s)	46, 1152
AclWI	GGATC	5 cut(s)	275, 288, 771, 788, 985
AcoI	YGGCCR	1 cut(s)	1101
AcsI	RAATTY	2 cut(s)	331, 751
AcuI	CTGAAG	2 cut(s)	190, 387
AdeI	CACNNNGTG	1 cut(s)	640
AfaI	GTAC	4 cut(s)	65, 211, 419, 533
AfiI	CCNNNNNNNGG	4 cut(s)	166, 862, 1016, 1110
AflIII	ACRYGT	1 cut(s)	572
AgeI	ACCGGT	1 cut(s)	133
AgsI	TTSAA	5 cut(s)	811, 817, 843, 1034, 1276
AjiI	CACGTC	2 cut(s)	575, 969
AluBI	AGCT	9 cut(s)	204, 390, 455, 623, 707, 807, 1039, 1055, 1271
AluI	AGCT	9 cut(s)	204, 390, 455, 623, 707, 807, 1039, 1055, 1271
Alw21I	GWGCWC	2 cut(s)	392, 1041
Alw26I	GTCTC	3 cut(s)	75, 127, 1247
AlwI	GGATC	5 cut(s)	275, 288, 771, 788, 985
AoxI	GGCC	2 cut(s)	104, 1101
ApeKI	GCWGC	2 cut(s)	1154, 1289
ApoI	RAATTY	2 cut(s)	331, 751
AsiGI	ACCGGT	1 cut(s)	133
Asp718I	GGTACC	1 cut(s)	417
AspA2I	CCTAGG	1 cut(s)	407
AspS9I	GGNCC	2 cut(s)	104, 631
AsuC2I	CCSGG	4 cut(s)	161, 179, 278, 775
AsuHPI	GGTGA	4 cut(s)	65, 500, 1056, 1068
AsuII	TTCGAA	1 cut(s)	236
AsuNHI	GCTAGC	1 cut(s)	875
AvaII	GGWCC	1 cut(s)	631
AvrII	CCTAGG	1 cut(s)	407
BalI	TGGCCA	1 cut(s)	1103
BamHI	GGATCC	1 cut(s)	280
BanI	GGYRCC	2 cut(s)	417, 1169
BanII	GRGCYC	2 cut(s)	392, 1041
BbsI	GAAGAC	3 cut(s)	351, 453, 1053
Bbv12I	GWGCWC	2 cut(s)	392, 1041
BbvI	GCAGC	2 cut(s)	1141, 1276
BccI	CCATC	2 cut(s)	479, 1093
BceAI	ACGGC	1 cut(s)	104
BclI	TGATCA	1 cut(s)	823
BcnI	CCSGG	4 cut(s)	161, 179, 278, 775
BcoDI	GTCTC	3 cut(s)	75, 127, 1247
BfaI	CTAG	3 cut(s)	408, 527, 876
BisI	GCNGC	2 cut(s)	1155, 1290
BlnI	CCTAGG	1 cut(s)	407
BlsI	GCNGC	2 cut(s)	1156, 1291
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	4 cut(s)	161, 179, 278, 775
Bme18I	GGWCC	1 cut(s)	631
BmgBI	CACGTC	2 cut(s)	575, 969
BmgT120I	GGNCC	2 cut(s)	104, 631
BmiI	GGNNCC	5 cut(s)	282, 419, 1123, 1143, 1171
BmrFI	CCNGG	4 cut(s)	161, 179, 278, 775
BmsI	GCATC	1 cut(s)	862
BmtI	GCTAGC	1 cut(s)	879
BpiI	GAAGAC	3 cut(s)	351, 453, 1053
Bpu10I	CCTNAGC	1 cut(s)	391
Bpu14I	TTCGAA	1 cut(s)	236
BpuMI	CCSGG	4 cut(s)	161, 179, 278, 775
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	5 cut(s)	276, 407, 773, 973, 1067
BsaWI	WCCGGW	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	4 cut(s)	166, 862, 1016, 1110
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	3 cut(s)	188, 893, 1133
BseDI	CCNNGG	5 cut(s)	276, 407, 773, 973, 1067
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	4 cut(s)	166, 862, 1016, 1110
BseMII	CTCAG	7 cut(s)	191, 405, 579, 755, 948, 999, 1054
BseNI	ACTGG	3 cut(s)	188, 893, 1133
BseRI	GAGGAG	4 cut(s)	335, 1134, 1137, 1296
BseXI	GCAGC	2 cut(s)	1141, 1276
BseYI	CCCAGC	1 cut(s)	623
BsgI	GTGCAG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	106, 1103
BshNI	GGYRCC	2 cut(s)	417, 1169
BshTI	ACCGGT	1 cut(s)	133
BsiHKAI	GWGCWC	2 cut(s)	392, 1041
BsiSI	CCGG	5 cut(s)	134, 161, 178, 278, 775
BslFI	GGGAC	3 cut(s)	736, 955, 1126
BslI	CCNNNNNNNGG	4 cut(s)	166, 862, 1016, 1110
BsmAI	GTCTC	3 cut(s)	75, 127, 1247
BsmBI	CGTCTC	2 cut(s)	127, 1247
BsmFI	GGGAC	3 cut(s)	736, 955, 1126
BsmI	GAATGC	2 cut(s)	838, 1237
BsnI	GGCC	2 cut(s)	106, 1103
Bso31I	GGTCTC	1 cut(s)	75
Bsp119I	TTCGAA	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	392, 1041
Bsp143I	GATC	6 cut(s)	280, 763, 793, 823, 977, 1003
Bsp19I	CCATGG	1 cut(s)	973
BspACI	CCGC	2 cut(s)	46, 1152
BspANI	GGCC	2 cut(s)	106, 1103
BspCNI	CTCAG	7 cut(s)	192, 404, 580, 754, 949, 998, 1053
BspLI	GGNNCC	5 cut(s)	282, 419, 1123, 1143, 1171
BspOI	GCTAGC	1 cut(s)	879
BspPI	GGATC	5 cut(s)	275, 288, 771, 788, 985
BspQI	GCTCTTC	1 cut(s)	1029
BspT104I	TTCGAA	1 cut(s)	236
BspT107I	GGYRCC	2 cut(s)	417, 1169
BspTNI	GGTCTC	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	3 cut(s)	188, 893, 1133
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	5 cut(s)	276, 407, 773, 973, 1067
BssMI	GATC	6 cut(s)	280, 763, 793, 823, 977, 1003
BssT1I	CCWWGG	3 cut(s)	407, 973, 1067
Bst4CI	ACNGT	6 cut(s)	345, 476, 560, 1030, 1047, 1117
Bst6I	CTCTTC	4 cut(s)	130, 294, 312, 1029
BstAPI	GCANNNNNTGC	1 cut(s)	872
BstBI	TTCGAA	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	877
BstDEI	CTNAG	8 cut(s)	200, 354, 391, 588, 741, 957, 985, 1040
BstDSI	CCRYGG	1 cut(s)	973
BstF5I	GGATG	1 cut(s)	505
BstKTI	GATC	6 cut(s)	283, 766, 796, 826, 980, 1006
BstMAI	GTCTC	3 cut(s)	75, 127, 1247
BstMBI	GATC	6 cut(s)	280, 763, 793, 823, 977, 1003
BstMWI	GCNNNNNNNGC	3 cut(s)	435, 713, 872
BstNSI	RCATGY	2 cut(s)	21, 260
BstSCI	CCNGG	4 cut(s)	159, 177, 276, 773
BstV1I	GCAGC	2 cut(s)	1141, 1276
BstV2I	GAAGAC	3 cut(s)	351, 453, 1053
BstX2I	RGATCY	2 cut(s)	280, 793
BstYI	RGATCY	2 cut(s)	280, 793
BsuRI	GGCC	2 cut(s)	106, 1103
BtgI	CCRYGG	1 cut(s)	973
BtgZI	GCGATG	1 cut(s)	453
BtrI	CACGTC	2 cut(s)	575, 969
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	3 cut(s)	195, 565, 728
Cac8I	GCNNGC	1 cut(s)	877
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	104, 631
Csp6I	GTAC	4 cut(s)	64, 210, 418, 532
CspAI	ACCGGT	1 cut(s)	133
CviAII	CATG	5 cut(s)	18, 257, 974, 998, 1138
CviQI	GTAC	4 cut(s)	64, 210, 418, 532
DdeI	CTNAG	8 cut(s)	200, 354, 391, 588, 741, 957, 985, 1040
DpnI	GATC	6 cut(s)	282, 765, 795, 825, 979, 1005
DpnII	GATC	6 cut(s)	280, 763, 793, 823, 977, 1003
DraIII	CACNNNGTG	1 cut(s)	640
EaeI	YGGCCR	1 cut(s)	1101
Eam1104I	CTCTTC	4 cut(s)	130, 294, 312, 1029
EarI	CTCTTC	4 cut(s)	130, 294, 312, 1029
Ecl136II	GAGCTC	2 cut(s)	390, 1039
Eco130I	CCWWGG	3 cut(s)	407, 973, 1067
Eco24I	GRGCYC	2 cut(s)	392, 1041
Eco31I	GGTCTC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	631
Eco53kI	GAGCTC	2 cut(s)	390, 1039
Eco57I	CTGAAG	2 cut(s)	190, 387
EcoICRI	GAGCTC	2 cut(s)	390, 1039
EcoT14I	CCWWGG	3 cut(s)	407, 973, 1067
EcoT38I	GRGCYC	2 cut(s)	392, 1041
ErhI	CCWWGG	3 cut(s)	407, 973, 1067
Esp3I	CGTCTC	2 cut(s)	127, 1247
FaeI	CATG	5 cut(s)	21, 260, 977, 1001, 1141
FaqI	GGGAC	3 cut(s)	736, 955, 1126
FatI	CATG	5 cut(s)	17, 256, 973, 997, 1137
FauI	CCCGC	1 cut(s)	1159
FbaI	TGATCA	1 cut(s)	823
Fnu4HI	GCNGC	2 cut(s)	1155, 1290
FokI	GGATG	1 cut(s)	512
FriOI	GRGCYC	2 cut(s)	392, 1041
Fsp4HI	GCNGC	2 cut(s)	1155, 1290
FspBI	CTAG	3 cut(s)	408, 527, 876
GluI	GCNGC	2 cut(s)	1155, 1290
GsaI	CCCAGC	1 cut(s)	627
HaeIII	GGCC	2 cut(s)	106, 1103
HapII	CCGG	5 cut(s)	134, 161, 178, 278, 775
Hin1II	CATG	5 cut(s)	21, 260, 977, 1001, 1141
HincII	GTYRAC	1 cut(s)	919
HindII	GTYRAC	1 cut(s)	919
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	5 cut(s)	233, 551, 688, 848, 1132
HpaI	GTTAAC	1 cut(s)	919
HpaII	CCGG	5 cut(s)	134, 161, 178, 278, 775
HphI	GGTGA	4 cut(s)	65, 500, 1056, 1068
Hpy166II	GTNNAC	2 cut(s)	73, 919
Hpy188I	TCNGA	7 cut(s)	60, 367, 744, 793, 904, 1043, 1121
Hpy188III	TCNNGA	4 cut(s)	244, 767, 827, 883
Hpy8I	GTNNAC	2 cut(s)	73, 919
HpyAV	CCTTC	3 cut(s)	304, 512, 958
HpyCH4III	ACNGT	6 cut(s)	345, 476, 560, 1030, 1047, 1117
HpyCH4IV	ACGT	2 cut(s)	574, 968
HpyCH4V	TGCA	4 cut(s)	17, 131, 429, 1022
HpyF10VI	GCNNNNNNNGC	3 cut(s)	435, 713, 872
HpyF3I	CTNAG	8 cut(s)	200, 354, 391, 588, 741, 957, 985, 1040
HpySE526I	ACGT	2 cut(s)	574, 968
Hsp92II	CATG	5 cut(s)	21, 260, 977, 1001, 1141
KpnI	GGTACC	1 cut(s)	421
Ksp22I	TGATCA	1 cut(s)	823
KspAI	GTTAAC	1 cut(s)	919
Kzo9I	GATC	6 cut(s)	280, 763, 793, 823, 977, 1003
LguI	GCTCTTC	1 cut(s)	1029
LmnI	GCTCC	1 cut(s)	1147
Lsp1109I	GCAGC	2 cut(s)	1141, 1276
LweI	GCATC	1 cut(s)	862
MaeI	CTAG	3 cut(s)	408, 527, 876
MaeII	ACGT	2 cut(s)	574, 968
MaeIII	GTNAC	2 cut(s)	223, 1074
MalI	GATC	6 cut(s)	282, 765, 795, 825, 979, 1005
MboI	GATC	6 cut(s)	280, 763, 793, 823, 977, 1003
MflI	RGATCY	2 cut(s)	280, 793
MhlI	GDGCHC	2 cut(s)	392, 1041
MlsI	TGGCCA	1 cut(s)	1103
MluCI	AATT	8 cut(s)	331, 424, 543, 751, 812, 1011, 1231, 1295
MluNI	TGGCCA	1 cut(s)	1103
MmeI	TCCRAC	5 cut(s)	270, 609, 876, 1099, 1242
Mox20I	TGGCCA	1 cut(s)	1103
MscI	TGGCCA	1 cut(s)	1103
MseI	TTAA	2 cut(s)	918, 1025
Msp20I	TGGCCA	1 cut(s)	1103
MspA1I	CMGCKG	2 cut(s)	623, 1154
MspI	CCGG	5 cut(s)	134, 161, 178, 278, 775
MspR9I	CCNGG	4 cut(s)	161, 179, 278, 775
Mva1269I	GAATGC	2 cut(s)	838, 1237
MwoI	GCNNNNNNNGC	3 cut(s)	435, 713, 872
NciI	CCSGG	4 cut(s)	161, 179, 278, 775
NcoI	CCATGG	1 cut(s)	973
NdeII	GATC	6 cut(s)	280, 763, 793, 823, 977, 1003
NheI	GCTAGC	1 cut(s)	875
NlaIII	CATG	5 cut(s)	21, 260, 977, 1001, 1141
NlaIV	GGNNCC	5 cut(s)	282, 419, 1123, 1143, 1171
NmuCI	GTSAC	1 cut(s)	1074
NspI	RCATGY	2 cut(s)	21, 260
NspV	TTCGAA	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	1029
PcsI	WCGNNNNNNNCGW	2 cut(s)	383, 1172
PctI	GAATGC	2 cut(s)	838, 1237
PfeI	GAWTC	5 cut(s)	233, 551, 688, 848, 1132
PflMI	CCANNNNNTGG	1 cut(s)	862
PfoI	TCCNGGA	1 cut(s)	177
PinAI	ACCGGT	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	1156, 1291
Psp124BI	GAGCTC	2 cut(s)	392, 1041
PspFI	CCCAGC	1 cut(s)	623
PspN4I	GGNNCC	5 cut(s)	282, 419, 1123, 1143, 1171
PspPI	GGNCC	2 cut(s)	104, 631
PsuI	RGATCY	2 cut(s)	280, 793
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	4 cut(s)	65, 211, 419, 533
RsaNI	GTAC	4 cut(s)	64, 210, 418, 532
SacI	GAGCTC	2 cut(s)	392, 1041
SapI	GCTCTTC	1 cut(s)	1029
SaqAI	TTAA	2 cut(s)	918, 1025
SatI	GCNGC	2 cut(s)	1155, 1290
Sau3AI	GATC	6 cut(s)	280, 763, 793, 823, 977, 1003
Sau96I	GGNCC	2 cut(s)	104, 631
ScaI	AGTACT	1 cut(s)	211
ScrFI	CCNGG	4 cut(s)	161, 179, 278, 775
SduI	GDGCHC	2 cut(s)	392, 1041
SfaNI	GCATC	1 cut(s)	862
SfuI	TTCGAA	1 cut(s)	236
SgrAI	CRCCGGYG	1 cut(s)	133
SinI	GGWCC	1 cut(s)	631
Sse9I	AATT	8 cut(s)	331, 424, 543, 751, 812, 1011, 1231, 1295
SsiI	CCGC	2 cut(s)	46, 1152
SspMI	CTAG	3 cut(s)	408, 527, 876
SstI	GAGCTC	2 cut(s)	392, 1041
StyD4I	CCNGG	4 cut(s)	159, 177, 276, 773
StyI	CCWWGG	3 cut(s)	407, 973, 1067
TaaI	ACNGT	6 cut(s)	345, 476, 560, 1030, 1047, 1117
TaiI	ACGT	2 cut(s)	577, 971
TaqI	TCGA	6 cut(s)	214, 236, 263, 386, 884, 1006
TaqII	GACCGA	1 cut(s)	367
TasI	AATT	8 cut(s)	331, 424, 543, 751, 812, 1011, 1231, 1295
TatI	WGTACW	1 cut(s)	209
TfiI	GAWTC	5 cut(s)	233, 551, 688, 848, 1132
Tru1I	TTAA	2 cut(s)	918, 1025
Tru9I	TTAA	2 cut(s)	918, 1025
TscAI	CASTG	3 cut(s)	195, 565, 735
TseFI	GTSAC	1 cut(s)	1074
TseI	GCWGC	2 cut(s)	1154, 1289
Tsp45I	GTSAC	1 cut(s)	1074
TspDTI	ATGAA	8 cut(s)	459, 531, 555, 629, 653, 749, 888, 1014
TspRI	CASTG	3 cut(s)	195, 565, 735
Van91I	CCANNNNNTGG	1 cut(s)	862
VpaK11BI	GGWCC	1 cut(s)	631
XapI	RAATTY	2 cut(s)	331, 751
XceI	RCATGY	2 cut(s)	21, 260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	859
XmaJI	CCTAGG	1 cut(s)	407
XspI	CTAG	3 cut(s)	408, 527, 876
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.