Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003544

Physical Location & Seq

Genomic Coordinates Reverse (-)

49277167 .. 49280183

Gene Structure 3017 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG309800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCCATAATTGGGACTGTTGGGAGCTACTGGAATGATCACACTGGTCCTGTCAAGGGTTCTGGCGCCTCCTCTTACAAAGGAATACCAAACACGACCAGCAAGTATAGAGAGGATAGAAGAGTCAACTGGCACTCTACCCCATTTGAGACACGCATTTCTGGGTTCATAAGGAAACAACTCCCGTTGGGATTAACCTATAATTTCACAGCAGTGAGGACTAATGCTCGAATTGTGGAAGGGGATCCAGGTAAAGTAATTTGCAAGACTTCAAAAAAAGGTGTCAAGAAAGGAAAAAAACAAAAAAAGAGTATAGAAGCAACCGTTATTGCTATTAACAGGGAAGAAAGGAAGCCAGGAATAAGAATTTCGGATGGAGTTTCTAATAATTCACATAGGGAATCACATACTCCCTACGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.52

Weight (kDa)

10.26

Isoelectric Point (pI)

19.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04030 AT1G04030 AT5G44040
fragaria_vesca	FvH4_2g20800 FvH4_2g20800
malus_domestica	MD05G1191900.v1.1 MD10G1178600.v1.1 MD10G1178700.v1.1
prunus_persica	Prupe.8G218000_v2.0.a1 Prupe.8G218000_v2.0.a1
pyrus_communis	pycom05g17880 pycom10g15500
rosa_chinensis	RchiOBHm_Chr0c16g0499811 RchiOBHm_Chr6g0287131 RchiOBHm_Chr6g0287181
rosa_laevigata	RLG00000012518
rosa_multiflora	Rmu_sc0005297.1_g000021
rosa_roxburghii	Rroxscaffold_7G00181680
rosa_rugosa	Rorug06G0185800 Rorug06G0185900 Rorug06G0185900
rosa_samantha	Rh6AG297200 Rh6BG302400 Rh6CG307500 Rh6CG309500 Rh6CG309800 Rh6CG310000 Rh6CG310400 Rh6CG310600 Rh6DG293100 Rh6DG293400 Rh6DG293600 Rh6DG294000 Rh6DG294300
rosa_wichuraiana	Rw6G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AclWI	GGATC	2 cut(s)	239, 252
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	366
AcyI	GRCGYC	1 cut(s)	66
AfiI	CCNNNNNNNGG	2 cut(s)	12, 56
AgsI	TTSAA	1 cut(s)	273
AjnI	CCWGG	2 cut(s)	247, 355
AleI	CACNNNNGTG	1 cut(s)	212
AluBI	AGCT	1 cut(s)	27
AluI	AGCT	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	2 cut(s)	239, 252
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	366
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	65
BccI	CCATC	1 cut(s)	368
BciT130I	CCWGG	2 cut(s)	249, 357
BclI	TGATCA	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	143
BfoI	RGCGCY	1 cut(s)	69
Bme1390I	CCNGG	2 cut(s)	249, 357
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	2 cut(s)	67, 246
BmrFI	CCNGG	2 cut(s)	249, 357
BsaHI	GRCGYC	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 56
Bse1I	ACTGG	3 cut(s)	35, 49, 134
BseBI	CCWGG	2 cut(s)	249, 357
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	2 cut(s)	12, 56
BseNI	ACTGG	3 cut(s)	35, 49, 134
BseRI	GAGGAG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	2 cut(s)	12, 56
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	37, 244
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	67, 246
BspPI	GGATC	2 cut(s)	239, 252
BspT107I	GGYRCC	1 cut(s)	65
BsrI	ACTGG	3 cut(s)	35, 49, 134
BssMI	GATC	2 cut(s)	37, 244
BssNI	GRCGYC	1 cut(s)	66
Bst2UI	CCWGG	2 cut(s)	249, 357
Bst4CI	ACNGT	2 cut(s)	19, 325
Bst6I	CTCTTC	1 cut(s)	115
BstACI	GRCGYC	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	379
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	2 cut(s)	40, 247
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	37, 244
BstNI	CCWGG	2 cut(s)	249, 357
BstSCI	CCNGG	2 cut(s)	247, 355
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	2 cut(s)	42, 219
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	47
CviJI	RGCY	3 cut(s)	5, 27, 355
CviKI_1	RGCY	3 cut(s)	5, 27, 355
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	2 cut(s)	39, 246
DpnII	GATC	2 cut(s)	37, 244
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	47
EcoRII	CCWGG	2 cut(s)	247, 355
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
FaiI	YATR	7 cut(s)	8, 108, 170, 201, 314, 396, 408
FaqI	GGGAC	1 cut(s)	28
FbaI	TGATCA	1 cut(s)	37
FokI	GGATG	1 cut(s)	386
GlaI	GCGC	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	66
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	2 cut(s)	123, 401
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	373
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	2 cut(s)	19, 325
HpyCH4V	TGCA	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	66
HspAI	GCGC	1 cut(s)	66
KasI	GGCGCC	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	37, 244
LmnI	GCTCC	1 cut(s)	24
MalI	GATC	2 cut(s)	39, 246
MboI	GATC	2 cut(s)	37, 244
MboII	GAAGA	2 cut(s)	132, 356
MflI	RGATCY	1 cut(s)	244
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	9, 202, 231, 258, 366, 388
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	132
MnlI	CCTC	4 cut(s)	79, 82, 106, 210
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	194, 336, 421
MslI	CAYNNNNRTG	1 cut(s)	212
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	249, 357
MvaI	CCWGG	2 cut(s)	249, 357
NarI	GGCGCC	1 cut(s)	66
NdeII	GATC	2 cut(s)	37, 244
NlaIV	GGNNCC	2 cut(s)	67, 246
OliI	CACNNNNGTG	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	401
PleI	GAGTC	1 cut(s)	131
PluTI	GGCGCC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	131
Psp6I	CCWGG	2 cut(s)	247, 355
PspGI	CCWGG	2 cut(s)	247, 355
PspN4I	GGNNCC	2 cut(s)	67, 246
PspPI	GGNCC	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	3 cut(s)	194, 336, 421
Sau3AI	GATC	2 cut(s)	37, 244
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	2 cut(s)	249, 357
SetI	ASST	4 cut(s)	29, 200, 253, 283
SfoI	GGCGCC	1 cut(s)	67
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	212
Sse9I	AATT	6 cut(s)	9, 202, 231, 258, 366, 388
SspDI	GGCGCC	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	247, 355
TaaI	ACNGT	2 cut(s)	19, 325
TaqI	TCGA	1 cut(s)	229
TasI	AATT	6 cut(s)	9, 202, 231, 258, 366, 388
TfiI	GAWTC	1 cut(s)	401
Tru1I	TTAA	3 cut(s)	194, 336, 421
Tru9I	TTAA	3 cut(s)	194, 336, 421
TscAI	CASTG	2 cut(s)	49, 219
TspDTI	ATGAA	1 cut(s)	157
TspRI	CASTG	2 cut(s)	49, 219
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.