Rh6DG293100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
49185634 .. 49239836
54203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG293100.1

Sequence Viewer

Length: 1056 bp
ATGGCAGTTGATGCTAGCCTGTCAAATTGTTTGGGTTCATCAGAAGCTACACTTGTTAACAAGACTAGCACAATATCTCTGGACACGTCTATGCCTGAGAAAAGCATGTCCTACGGATTACCACACTCAGCAACAAGCCACGAAGATAGACCAATTTTAGGTGCATTAACAGTTGAAGAGCTGAGACAGTTTTCAACTTCATCTTCACCGCGGAAGTCACCCAGTAGAAGCCCTGATGAGATGGCCATAATTGGGACTGTTGGGAGCTACTGGAATGATCACACTGGTCCTGCCAAGGGTTCTGGCGCCTCCTCTTACAAAGGAATATCAAACACGACCAGCAAGTACAGAGAGGATAGAAGAGTCAACTGGCACTCTACCCCATTTGAGACACGGCTGGAAAGAGCTTTGAATAGAGGTGTTGCAGATGCTTACTCTTCTTCTCGTACGCCTCATGGTTTCCGGACGGCGGCGAGTTCGGAGTACTACAGCTTGCCAGCTCTCAATGATCCTAGGATAAGCTACCGTACTCCATTAAGATCCTTCTTGAGTCTGCAATCTTTAACTGCCAAGAGTTTCAGGTCTTACAAGTCCCGGTTTAAGTTATTGAATGATGGCACTATTCGATGCTGGAGGGAGGGCAAGCGGCACAATGCATATCTGAAGAGATGGCCCAGGAGCTCGAAAGCGAAATTCGAGTGTGTGTTTAGTGAAGTTGGTGTTGTTAAAGAAGATGGGTTTTCGATGCCTGTGAACCCCAGCAGCCAAGAAACCTTGGGTCATTGTTTCATAGAGTTTAATTCTCCTCAGTCCTCAAGCTCCTCGAACTGGAACCTACCGCCGACACCGACGAGCTCCTCCGCCGACTTTGAAGAGGTCCGCTTACCGGAACCTACCACTGAGACCGACAAGCTCCTCTTTTCCGTCGAACAGCTCCTCCTTTACCAAATAAACCGTAACAACAGCTCTCTCACCCCAGACACAATAAACCCCGATCAATTATATAAGGTCCAGTTTAATTGTTGTGGCATTGGGATGAGAAGTTTTTGGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

351

Amino Acids

39.17

Weight (kDa)

8.88

Isoelectric Point (pI)

58.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 305
AccII CGCG 1 cut(s) 211
AccIII TCCGGA 1 cut(s) 462
AciI CCGC 7 cut(s) 209, 211, 470, 646, 839, 861, 880
AclWI GGATC 2 cut(s) 503, 534
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 692
AcuI CTGAAG 1 cut(s) 683
AcyI GRCGYC 1 cut(s) 306
AfaI GTAC 4 cut(s) 347, 448, 485, 529
AfiI CCNNNNNNNGG 6 cut(s) 158, 252, 296, 469, 828, 886
AflIII ACRYGT 1 cut(s) 84
AgsI TTSAA 5 cut(s) 176, 195, 412, 610, 872
AjiI CACGTC 1 cut(s) 87
AjnI CCWGG 1 cut(s) 674
AloI GAACNNNNNNTCC 2 cut(s) 921, 953
Alw21I GWGCWC 2 cut(s) 683, 857
Alw26I GTCTC 3 cut(s) 178, 383, 896
AlwI GGATC 2 cut(s) 503, 534
Aor13HI TCCGGA 1 cut(s) 462
AoxI GGCC 2 cut(s) 243, 671
ApeKI GCWGC 1 cut(s) 762
ApoI RAATTY 1 cut(s) 692
AspA2I CCTAGG 1 cut(s) 512
AspLEI GCGC 1 cut(s) 308
AspS9I GGNCC 4 cut(s) 287, 672, 877, 1009
AsuC2I CCSGG 1 cut(s) 595
AsuHPI GGTGA 3 cut(s) 198, 210, 964
AsuNHI GCTAGC 1 cut(s) 14
AvaII GGWCC 3 cut(s) 287, 877, 1009
AvrII CCTAGG 1 cut(s) 512
BalI TGGCCA 1 cut(s) 245
BanI GGYRCC 1 cut(s) 305
BanII GRGCYC 2 cut(s) 683, 857
Bbv12I GWGCWC 2 cut(s) 683, 857
BbvI GCAGC 1 cut(s) 774
BccI CCATC 4 cut(s) 235, 608, 663, 728
BceAI ACGGC 2 cut(s) 410, 483
BciT130I CCWGG 1 cut(s) 676
BclI TGATCA 1 cut(s) 277
BcnI CCSGG 1 cut(s) 595
BcoDI GTCTC 3 cut(s) 178, 383, 896
BfaI CTAG 3 cut(s) 15, 66, 513
BfmI CTRYAG 1 cut(s) 487
BfoI RGCGCY 1 cut(s) 309
BisI GCNGC 3 cut(s) 471, 647, 763
BlnI CCTAGG 1 cut(s) 512
BlsI GCNGC 3 cut(s) 472, 648, 764
BmcAI AGTACT 1 cut(s) 485
Bme1390I CCNGG 2 cut(s) 595, 676
Bme18I GGWCC 3 cut(s) 287, 877, 1009
BmgBI CACGTC 1 cut(s) 87
BmgT120I GGNCC 4 cut(s) 287, 672, 877, 1009
BmiI GGNNCC 3 cut(s) 307, 833, 891
BmrFI CCNGG 2 cut(s) 595, 676
BmrI ACTGGG 1 cut(s) 216
BmsI GCATC 3 cut(s) 418, 617, 735
BmtI GCTAGC 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 216
BpmI CTGGAG 1 cut(s) 652
BpuEI CTTGAG 2 cut(s) 568, 799
BpuMI CCSGG 1 cut(s) 595
BsaHI GRCGYC 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 896
BsaJI CCNNGG 5 cut(s) 209, 294, 512, 674, 774
BsaWI WCCGGW 2 cut(s) 462, 886
BsaXI ACNNNNNCTCC 2 cut(s) 921, 951
Bsc4I CCNNNNNNNGG 6 cut(s) 158, 252, 296, 469, 828, 886
Bse1I ACTGG 6 cut(s) 222, 275, 289, 374, 833, 1012
BseAI TCCGGA 1 cut(s) 462
BseBI CCWGG 1 cut(s) 676
BseDI CCNNGG 5 cut(s) 209, 294, 512, 674, 774
BseGI GGATG 1 cut(s) 1041
BseLI CCNNNNNNNGG 6 cut(s) 158, 252, 296, 469, 828, 886
BseMII CTCAG 5 cut(s) 87, 141, 173, 821, 891
BseNI ACTGG 6 cut(s) 222, 275, 289, 374, 833, 1012
BseRI GAGGAG 6 cut(s) 301, 795, 811, 847, 905, 926
BseXI GCAGC 1 cut(s) 774
BseYI CCCAGC 1 cut(s) 758
Bsh1236I CGCG 1 cut(s) 211
BshFI GGCC 2 cut(s) 245, 673
BshNI GGYRCC 1 cut(s) 305
BsiHKAI GWGCWC 2 cut(s) 683, 857
BsiSI CCGG 3 cut(s) 463, 595, 887
BsiWI CGTACG 1 cut(s) 446
BslFI GGGAC 2 cut(s) 268, 577
BslI CCNNNNNNNGG 6 cut(s) 158, 252, 296, 469, 828, 886
BsmAI GTCTC 3 cut(s) 178, 383, 896
BsmFI GGGAC 2 cut(s) 268, 577
BsnI GGCC 2 cut(s) 245, 673
Bso31I GGTCTC 1 cut(s) 896
Bsp1286I GDGCHC 2 cut(s) 683, 857
Bsp13I TCCGGA 1 cut(s) 462
Bsp143I GATC 4 cut(s) 277, 508, 539, 994
BspACI CCGC 7 cut(s) 209, 211, 470, 646, 839, 861, 880
BspANI GGCC 2 cut(s) 245, 673
BspCNI CTCAG 5 cut(s) 88, 140, 174, 820, 892
BspEI TCCGGA 1 cut(s) 462
BspFNI CGCG 1 cut(s) 211
BspLI GGNNCC 3 cut(s) 307, 833, 891
BspOI GCTAGC 1 cut(s) 18
BspPI GGATC 2 cut(s) 503, 534
BspQI GCTCTTC 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 896
BsrI ACTGG 6 cut(s) 222, 275, 289, 374, 833, 1012
BssECI CCNNGG 5 cut(s) 209, 294, 512, 674, 774
BssMI GATC 4 cut(s) 277, 508, 539, 994
BssNI GRCGYC 1 cut(s) 306
BssT1I CCWWGG 3 cut(s) 294, 512, 774
Bst2UI CCWGG 1 cut(s) 676
Bst4CI ACNGT 5 cut(s) 172, 189, 259, 527, 956
Bst6I CTCTTC 5 cut(s) 171, 355, 442, 659, 867
BstACI GRCGYC 1 cut(s) 306
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 4 cut(s) 16, 494, 498, 644
BstDEI CTNAG 5 cut(s) 96, 127, 182, 807, 900
BstDSI CCRYGG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 1041
BstFNI CGCG 1 cut(s) 211
BstH2I RGCGCY 1 cut(s) 309
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 4 cut(s) 280, 511, 542, 997
BstMAI GTCTC 3 cut(s) 178, 383, 896
BstMBI GATC 4 cut(s) 277, 508, 539, 994
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 676
BstNSI RCATGY 1 cut(s) 109
BstSCI CCNGG 2 cut(s) 593, 674
BstSFI CTRYAG 1 cut(s) 487
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 1 cut(s) 774
BstX2I RGATCY 1 cut(s) 539
BstYI RGATCY 1 cut(s) 539
BsuRI GGCC 2 cut(s) 245, 673
BtgI CCRYGG 1 cut(s) 209
BtrI CACGTC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 1041
BtsIMutI CAGTG 2 cut(s) 282, 897
Cac8I GCNNGC 4 cut(s) 16, 494, 498, 644
CfoI GCGC 1 cut(s) 308
Cfr13I GGNCC 4 cut(s) 287, 672, 877, 1009
Cfr42I CCGCGG 1 cut(s) 212
Csp6I GTAC 4 cut(s) 346, 447, 484, 528
CviAII CATG 2 cut(s) 106, 455
CviQI GTAC 4 cut(s) 346, 447, 484, 528
DdeI CTNAG 5 cut(s) 96, 127, 182, 807, 900
DinI GGCGCC 1 cut(s) 307
DpnI GATC 4 cut(s) 279, 510, 541, 996
DpnII GATC 4 cut(s) 277, 508, 539, 994
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 5 cut(s) 171, 355, 442, 659, 867
EarI CTCTTC 5 cut(s) 171, 355, 442, 659, 867
EciI GGCGGA 1 cut(s) 850
Ecl136II GAGCTC 2 cut(s) 681, 855
Eco130I CCWWGG 3 cut(s) 294, 512, 774
Eco24I GRGCYC 2 cut(s) 683, 857
Eco31I GGTCTC 1 cut(s) 896
Eco47I GGWCC 3 cut(s) 287, 877, 1009
Eco53kI GAGCTC 2 cut(s) 681, 855
Eco57I CTGAAG 1 cut(s) 683
EcoICRI GAGCTC 2 cut(s) 681, 855
EcoRII CCWGG 1 cut(s) 674
EcoT14I CCWWGG 3 cut(s) 294, 512, 774
EcoT22I ATGCAT 1 cut(s) 658
EcoT38I GRGCYC 2 cut(s) 683, 857
EgeI GGCGCC 1 cut(s) 307
EheI GGCGCC 1 cut(s) 307
ErhI CCWWGG 3 cut(s) 294, 512, 774
FaeI CATG 2 cut(s) 109, 458
FaiI YATR 8 cut(s) 92, 107, 248, 456, 658, 791, 1003, 1005
FalI AAGNNNNNCTT 4 cut(s) 36, 68, 902, 934
FaqI GGGAC 2 cut(s) 268, 577
FatI CATG 2 cut(s) 105, 454
FbaI TGATCA 1 cut(s) 277
Fnu4HI GCNGC 3 cut(s) 471, 647, 763
FokI GGATG 1 cut(s) 1048
FriOI GRGCYC 2 cut(s) 683, 857
Fsp4HI GCNGC 3 cut(s) 471, 647, 763
FspBI CTAG 3 cut(s) 15, 66, 513
GlaI GCGC 1 cut(s) 307
GluI GCNGC 3 cut(s) 471, 647, 763
GsaI CCCAGC 1 cut(s) 762
GsuI CTGGAG 1 cut(s) 652
HaeII RGCGCY 1 cut(s) 309
HaeIII GGCC 2 cut(s) 245, 673
HapII CCGG 3 cut(s) 463, 595, 887
HhaI GCGC 1 cut(s) 308
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 2 cut(s) 109, 458
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HincII GTYRAC 2 cut(s) 58, 367
HindII GTYRAC 2 cut(s) 58, 367
HinfI GANTC 2 cut(s) 363, 550
HpaI GTTAAC 1 cut(s) 58
HpaII CCGG 3 cut(s) 463, 595, 887
HphI GGTGA 3 cut(s) 198, 210, 964
Hpy166II GTNNAC 3 cut(s) 58, 367, 754
Hpy188I TCNGA 3 cut(s) 43, 481, 663
Hpy188III TCNNGA 3 cut(s) 80, 463, 547
Hpy8I GTNNAC 3 cut(s) 58, 367, 754
Hpy99I CGWCG 2 cut(s) 853, 929
HpyAV CCTTC 1 cut(s) 553
HpyCH4III ACNGT 5 cut(s) 172, 189, 259, 527, 956
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 4 cut(s) 164, 425, 556, 656
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 5 cut(s) 96, 127, 182, 807, 900
HpySE526I ACGT 1 cut(s) 86
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 2 cut(s) 109, 458
HspAI GCGC 1 cut(s) 306
KasI GGCGCC 1 cut(s) 305
Kpn2I TCCGGA 1 cut(s) 462
Ksp22I TGATCA 1 cut(s) 277
KspAI GTTAAC 1 cut(s) 58
KspI CCGCGG 1 cut(s) 212
Kzo9I GATC 4 cut(s) 277, 508, 539, 994
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 6 cut(s) 264, 678, 824, 860, 918, 939
Lsp1109I GCAGC 1 cut(s) 774
LweI GCATC 3 cut(s) 418, 617, 735
MaeI CTAG 3 cut(s) 15, 66, 513
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 2 cut(s) 216, 956
MalI GATC 4 cut(s) 279, 510, 541, 996
MboI GATC 4 cut(s) 277, 508, 539, 994
MboII GAAGA 9 cut(s) 155, 188, 195, 372, 429, 432, 676, 743, 884
MflI RGATCY 1 cut(s) 539
MhlI GDGCHC 2 cut(s) 683, 857
MlsI TGGCCA 1 cut(s) 245
MluCI AATT 7 cut(s) 25, 153, 249, 692, 799, 998, 1018
MluNI TGGCCA 1 cut(s) 245
Mly113I GGCGCC 1 cut(s) 306
MlyI GAGTC 2 cut(s) 372, 559
Mox20I TGGCCA 1 cut(s) 245
Mph1103I ATGCAT 1 cut(s) 658
MroI TCCGGA 1 cut(s) 462
MscI TGGCCA 1 cut(s) 245
MseI TTAA 8 cut(s) 57, 167, 536, 563, 600, 726, 798, 1017
MslI CAYNNNNRTG 2 cut(s) 89, 1034
Msp20I TGGCCA 1 cut(s) 245
MspA1I CMGCKG 1 cut(s) 211
MspI CCGG 3 cut(s) 463, 595, 887
MspR9I CCNGG 2 cut(s) 595, 676
MvaI CCWGG 1 cut(s) 676
MvnI CGCG 1 cut(s) 211
MwoI GCNNNNNNNGC 1 cut(s) 11
NarI GGCGCC 1 cut(s) 306
NciI CCSGG 1 cut(s) 595
NdeII GATC 4 cut(s) 277, 508, 539, 994
NheI GCTAGC 1 cut(s) 14
NlaIII CATG 2 cut(s) 109, 458
NlaIV GGNNCC 3 cut(s) 307, 833, 891
NmuCI GTSAC 1 cut(s) 216
NsiI ATGCAT 1 cut(s) 658
NspI RCATGY 1 cut(s) 109
PciSI GCTCTTC 1 cut(s) 171
Pfl23II CGTACG 1 cut(s) 446
PkrI GCNGC 3 cut(s) 472, 648, 764
PleI GAGTC 2 cut(s) 371, 558
PluTI GGCGCC 1 cut(s) 309
PpsI GAGTC 2 cut(s) 371, 558
Psp124BI GAGCTC 2 cut(s) 683, 857
Psp6I CCWGG 1 cut(s) 674
PspFI CCCAGC 1 cut(s) 758
PspGI CCWGG 1 cut(s) 674
PspLI CGTACG 1 cut(s) 446
PspN4I GGNNCC 3 cut(s) 307, 833, 891
PspPI GGNCC 4 cut(s) 287, 672, 877, 1009
PsuI RGATCY 1 cut(s) 539
RsaI GTAC 4 cut(s) 347, 448, 485, 529
RsaNI GTAC 4 cut(s) 346, 447, 484, 528
RseI CAYNNNNRTG 2 cut(s) 89, 1034
SacI GAGCTC 2 cut(s) 683, 857
SacII CCGCGG 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 171
SaqAI TTAA 8 cut(s) 57, 167, 536, 563, 600, 726, 798, 1017
SatI GCNGC 3 cut(s) 471, 647, 763
Sau3AI GATC 4 cut(s) 277, 508, 539, 994
Sau96I GGNCC 4 cut(s) 287, 672, 877, 1009
ScaI AGTACT 1 cut(s) 485
SchI GAGTC 2 cut(s) 372, 559
ScrFI CCNGG 2 cut(s) 595, 676
SduI GDGCHC 2 cut(s) 683, 857
SfaNI GCATC 3 cut(s) 418, 617, 735
SfcI CTRYAG 1 cut(s) 487
SfoI GGCGCC 1 cut(s) 307
Sfr303I CCGCGG 1 cut(s) 212
SgrBI CCGCGG 1 cut(s) 212
SinI GGWCC 3 cut(s) 287, 877, 1009
SmiMI CAYNNNNRTG 2 cut(s) 89, 1034
SmlI CTYRAG 2 cut(s) 547, 814
SmoI CTYRAG 2 cut(s) 547, 814
Sse9I AATT 7 cut(s) 25, 153, 249, 692, 799, 998, 1018
SsiI CCGC 7 cut(s) 209, 211, 470, 646, 839, 861, 880
SspDI GGCGCC 1 cut(s) 305
SspMI CTAG 3 cut(s) 15, 66, 513
SstI GAGCTC 2 cut(s) 683, 857
StyD4I CCNGG 2 cut(s) 593, 674
StyI CCWWGG 3 cut(s) 294, 512, 774
TaaI ACNGT 5 cut(s) 172, 189, 259, 527, 956
TaiI ACGT 1 cut(s) 89
TaqI TCGA 6 cut(s) 625, 683, 696, 743, 824, 927
TaqII GACCGA 1 cut(s) 920
TasI AATT 7 cut(s) 25, 153, 249, 692, 799, 998, 1018
TatI WGTACW 2 cut(s) 345, 483
TauI GCSGC 2 cut(s) 473, 649
Tru1I TTAA 8 cut(s) 57, 167, 536, 563, 600, 726, 798, 1017
Tru9I TTAA 8 cut(s) 57, 167, 536, 563, 600, 726, 798, 1017
TscAI CASTG 2 cut(s) 289, 904
TseFI GTSAC 1 cut(s) 216
TseI GCWGC 1 cut(s) 762
Tsp45I GTSAC 1 cut(s) 216
TspDTI ATGAA 3 cut(s) 27, 189, 778
TspGWI ACGGA 2 cut(s) 129, 913
TspRI CASTG 2 cut(s) 289, 904
VpaK11BI GGWCC 3 cut(s) 287, 877, 1009
XapI RAATTY 1 cut(s) 692
XceI RCATGY 1 cut(s) 109
XmaJI CCTAGG 1 cut(s) 512
XspI CTAG 3 cut(s) 15, 66, 513
ZrmI AGTACT 1 cut(s) 485
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.