Rorug06G0185800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003544
Physical Location & Seq
Forward (+)
29422168 .. 29423299
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0185800.1

Sequence Viewer

Length: 618 bp
ATGGGAAGCACCACTTCAAAGATTGTACGACTGTTAGCTTATTTTGGTTACACGTACAGCTCCCTTAAGGTAAGGTCTGTTGACCATAGGGCTCACACTTTGTTTGAATGGGTTAAAGCTCTTTTTGATGAGCTAATTGGGAGCTCACTTGAGCTTCTTAATGAAGTTTTGGATGGTGCCTATAGAGTTGATGTTAAGCGTGGGGGAGTGGGAGTTGTTGTGCGCGATGACTGGGGTCGGTGTGTTGCGGCCACGGCTAGGCCTTTCAACCATGCACAATCTGCATTGCATATGGAGGCAGAAGCAATCCGAGTTGGGTTCTTAATTGCTATCCACAAGGGTTGGACAGAAGTTAAGGTTGAGAGTGATTATGCCACGCTGATTTATGCTCTCAGTGAGGGGGATGAAGACTACTCTTCTATTGGTTGGATTGTAAAAGTAACTAATGAAGAACAAAACACACCCGATGGGGATAAACGAGAAACCCTAAGACCGGGAACTCCGTTTTCTGCAAACTTGTTCTCGTCCGGCGGCGCCTGGACTTCCGGGCTGGCCTCCGGCCTCGCCGTCGTCTTGGGTTTTGCTGCCGGACGGGAGATCAATCTCTACTTCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.45

Weight (kDa)

5.55

Isoelectric Point (pI)

25.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 58 - 136 1.1e-12 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 176, 533
AccII CGCG 1 cut(s) 225
AciI CCGC 2 cut(s) 248, 531
AcoI YGGCCR 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 534
AfaI GTAC 2 cut(s) 27, 56
AfiI CCNNNNNNNGG 2 cut(s) 258, 493
AflII CTTAAG 1 cut(s) 65
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 3 cut(s) 18, 107, 268
AjnI CCWGG 1 cut(s) 536
AluBI AGCT 6 cut(s) 38, 60, 119, 133, 144, 154
AluI AGCT 6 cut(s) 38, 60, 119, 133, 144, 154
Alw21I GWGCWC 1 cut(s) 146
AoxI GGCC 4 cut(s) 249, 260, 552, 559
ApeKI GCWGC 1 cut(s) 584
AspLEI GCGC 2 cut(s) 225, 536
AsuC2I CCSGG 2 cut(s) 495, 547
BanI GGYRCC 2 cut(s) 176, 533
BanII GRGCYC 2 cut(s) 94, 146
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 571
BccI CCATC 2 cut(s) 167, 461
BceAI ACGGC 2 cut(s) 270, 551
BciT130I CCWGG 1 cut(s) 538
BcnI CCSGG 2 cut(s) 495, 547
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 181
BfoI RGCGCY 1 cut(s) 537
BfrI CTTAAG 1 cut(s) 65
BisI GCNGC 3 cut(s) 249, 532, 585
BlsI GCNGC 3 cut(s) 250, 533, 586
Bme1390I CCNGG 3 cut(s) 495, 538, 547
BmiI GGNNCC 2 cut(s) 178, 535
BmrFI CCNGG 3 cut(s) 495, 538, 547
BmrI ACTGGG 1 cut(s) 241
BmuI ACTGGG 1 cut(s) 241
BoxI GACNNNNGTC 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 495, 547
BsaAI YACGTR 1 cut(s) 54
BsaHI GRCGYC 1 cut(s) 534
BsaJI CCNNGG 1 cut(s) 252
BsaXI ACNNNNNCTCC 4 cut(s) 198, 204, 228, 234
Bsc4I CCNNNNNNNGG 2 cut(s) 258, 493
Bse1I ACTGG 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 538
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 2 cut(s) 178, 409
BseLI CCNNNNNNNGG 2 cut(s) 258, 493
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 406
BseNI ACTGG 1 cut(s) 236
BseXI GCAGC 1 cut(s) 571
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 4 cut(s) 251, 262, 554, 561
BshNI GGYRCC 2 cut(s) 176, 533
BsiHKAI GWGCWC 1 cut(s) 146
BsiSI CCGG 5 cut(s) 494, 528, 546, 558, 588
BslI CCNNNNNNNGG 2 cut(s) 258, 493
BsnI GGCC 4 cut(s) 251, 262, 554, 561
Bsp1286I GDGCHC 2 cut(s) 94, 146
Bsp143I GATC 1 cut(s) 597
BspACI CCGC 2 cut(s) 248, 531
BspANI GGCC 4 cut(s) 251, 262, 554, 561
BspCNI CTCAG 1 cut(s) 405
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 2 cut(s) 178, 535
BspT107I GGYRCC 2 cut(s) 176, 533
BspTI CTTAAG 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 284
BsrI ACTGG 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 1 cut(s) 597
BssNI GRCGYC 1 cut(s) 534
Bst2UI CCWGG 1 cut(s) 538
Bst4CI ACNGT 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 421
BstACI GRCGYC 1 cut(s) 534
BstAFI CTTAAG 1 cut(s) 65
BstAPI GCANNNNNTGC 1 cut(s) 281
BstBAI YACGTR 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 552
BstDEI CTNAG 2 cut(s) 392, 488
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 178, 409
BstFNI CGCG 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 537
BstHHI GCGC 2 cut(s) 225, 536
BstKTI GATC 1 cut(s) 600
BstMBI GATC 1 cut(s) 597
BstMWI GCNNNNNNNGC 2 cut(s) 254, 281
BstNI CCWGG 1 cut(s) 538
BstPAI GACNNNNGTC 1 cut(s) 234
BstSCI CCNGG 3 cut(s) 493, 536, 545
BstSFI CTRYAG 1 cut(s) 181
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 571
BstV2I GAAGAC 1 cut(s) 414
BsuRI GGCC 4 cut(s) 251, 262, 554, 561
BtgI CCRYGG 1 cut(s) 252
BtgZI GCGATG 1 cut(s) 240
BtsCI GGATG 2 cut(s) 178, 409
BtsIMutI CAGTG 1 cut(s) 400
Cac8I GCNNGC 1 cut(s) 552
CfoI GCGC 2 cut(s) 225, 536
Csp6I GTAC 2 cut(s) 26, 55
CspCI CAANNNNNGTGG 2 cut(s) 323, 358
CviAII CATG 1 cut(s) 272
CviQI GTAC 2 cut(s) 26, 55
DdeI CTNAG 2 cut(s) 392, 488
DinI GGCGCC 1 cut(s) 535
DpnI GATC 1 cut(s) 599
DpnII GATC 1 cut(s) 597
EaeI YGGCCR 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 421
EarI CTCTTC 1 cut(s) 421
Ecl136II GAGCTC 1 cut(s) 144
Eco147I AGGCCT 1 cut(s) 262
Eco24I GRGCYC 2 cut(s) 94, 146
Eco53kI GAGCTC 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 536
EcoT38I GRGCYC 2 cut(s) 94, 146
EgeI GGCGCC 1 cut(s) 535
EheI GGCGCC 1 cut(s) 535
FaeI CATG 1 cut(s) 275
FaiI YATR 8 cut(s) 87, 183, 273, 291, 293, 372, 387, 616
FalI AAGNNNNNCTT 1 cut(s) 30
FatI CATG 1 cut(s) 271
FauNDI CATATG 1 cut(s) 291
Fnu4HI GCNGC 3 cut(s) 249, 532, 585
FokI GGATG 2 cut(s) 185, 416
FriOI GRGCYC 2 cut(s) 94, 146
Fsp4HI GCNGC 3 cut(s) 249, 532, 585
FspBI CTAG 1 cut(s) 258
GlaI GCGC 2 cut(s) 224, 535
GluI GCNGC 3 cut(s) 249, 532, 585
HaeII RGCGCY 1 cut(s) 537
HaeIII GGCC 4 cut(s) 251, 262, 554, 561
HapII CCGG 5 cut(s) 494, 528, 546, 558, 588
HhaI GCGC 2 cut(s) 225, 536
Hin1I GRCGYC 1 cut(s) 534
Hin1II CATG 1 cut(s) 275
Hin6I GCGC 2 cut(s) 223, 534
HinP1I GCGC 2 cut(s) 223, 534
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HpaII CCGG 5 cut(s) 494, 528, 546, 558, 588
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 311
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 572
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 4 cut(s) 275, 284, 289, 512
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 281
HpyF3I CTNAG 2 cut(s) 392, 488
HpySE526I ACGT 1 cut(s) 53
Hsp92I GRCGYC 1 cut(s) 534
Hsp92II CATG 1 cut(s) 275
HspAI GCGC 2 cut(s) 223, 534
KasI GGCGCC 1 cut(s) 533
Kzo9I GATC 1 cut(s) 597
LmnI GCTCC 2 cut(s) 65, 141
LpnPI CCDG 9 cut(s) 217, 507, 523, 536, 541, 550, 559, 571, 601
Lsp1109I GCAGC 1 cut(s) 571
MaeI CTAG 1 cut(s) 258
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 2 cut(s) 47, 439
MalI GATC 1 cut(s) 599
MboI GATC 1 cut(s) 597
MboII GAAGA 3 cut(s) 408, 419, 461
MhlI GDGCHC 2 cut(s) 94, 146
MluCI AATT 2 cut(s) 135, 324
Mly113I GGCGCC 1 cut(s) 534
MmeI TCCRAC 2 cut(s) 323, 407
MnlI CCTC 4 cut(s) 289, 391, 565, 572
MseI TTAA 6 cut(s) 66, 114, 159, 195, 323, 354
MspCI CTTAAG 1 cut(s) 65
MspI CCGG 5 cut(s) 494, 528, 546, 558, 588
MspR9I CCNGG 3 cut(s) 495, 538, 547
MvaI CCWGG 1 cut(s) 538
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 254, 281
NarI GGCGCC 1 cut(s) 534
NciI CCSGG 2 cut(s) 495, 547
NdeI CATATG 1 cut(s) 291
NdeII GATC 1 cut(s) 597
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 2 cut(s) 178, 535
PceI AGGCCT 1 cut(s) 262
PkrI GCNGC 3 cut(s) 250, 533, 586
PluTI GGCGCC 1 cut(s) 537
Ppu21I YACGTR 1 cut(s) 54
PshAI GACNNNNGTC 1 cut(s) 234
Psp124BI GAGCTC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 536
PspGI CCWGG 1 cut(s) 536
PspN4I GGNNCC 2 cut(s) 178, 535
RsaI GTAC 2 cut(s) 27, 56
RsaNI GTAC 2 cut(s) 26, 55
SacI GAGCTC 1 cut(s) 146
SaqAI TTAA 6 cut(s) 66, 114, 159, 195, 323, 354
SatI GCNGC 3 cut(s) 249, 532, 585
Sau3AI GATC 1 cut(s) 597
ScrFI CCNGG 3 cut(s) 495, 538, 547
SduI GDGCHC 2 cut(s) 94, 146
SfcI CTRYAG 1 cut(s) 181
SfoI GGCGCC 1 cut(s) 535
SmlI CTYRAG 2 cut(s) 65, 149
SmoI CTYRAG 2 cut(s) 65, 149
Sse9I AATT 2 cut(s) 135, 324
SseBI AGGCCT 1 cut(s) 262
SsiI CCGC 2 cut(s) 248, 531
SspDI GGCGCC 1 cut(s) 533
SspMI CTAG 1 cut(s) 258
SstI GAGCTC 1 cut(s) 146
StuI AGGCCT 1 cut(s) 262
StyD4I CCNGG 3 cut(s) 493, 536, 545
TaaI ACNGT 1 cut(s) 33
TaiI ACGT 1 cut(s) 56
TasI AATT 2 cut(s) 135, 324
TauI GCSGC 2 cut(s) 251, 534
Tru1I TTAA 6 cut(s) 66, 114, 159, 195, 323, 354
Tru9I TTAA 6 cut(s) 66, 114, 159, 195, 323, 354
TscAI CASTG 1 cut(s) 400
TseI GCWGC 1 cut(s) 584
TspDTI ATGAA 3 cut(s) 177, 420, 462
TspGWI ACGGA 1 cut(s) 492
TspRI CASTG 1 cut(s) 400
Vha464I CTTAAG 1 cut(s) 65
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.