AT1G04040

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002586
Physical Location & Seq
Reverse (-)
1042362 .. 1043887
1526 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04040.1

Sequence Viewer

Length: 816 bp
ATGGACCGAACCATGTTTCTTTCCCTGACAATAGCCTCACTCTTGGTCGGAGTCGTCTCAGCTGGTGACTGGAACATCTTGAACCAACTCAGAGGACTCGGCTCATCGTCAAGCCAAAATGGTATCGTTTCTAAAGGTATCAAGACGGACCTGAAAGGATACTGTGAAAGCTGGAGGATCAACGTGGAAGTTCACAACATCAGAAAGTTCGATGTGGTGCCTCAAGAGTGTGTATCGCACATTAAGGATTACATGACGTCATCGCAGTACAAGGATGACGTGGCGAGAACCGTTGATGAGGTCATTCTTCATTTCGGGAGCATGTGCTGTAGCAAGTCTAAGTGTGACGGCATGGACGCTTGGATCTTTGATATCGATGACACGCTTCTCTCTACCATCCCTTACCACAAGAAAAATGGCTTCTTCGGAGGAGAGAAATTGAACTCAACGAAATTCGAGGATTGGATACAGAAGAAGAAAGCACCAGCAGTGCCACACATGAAGAAATTGTACCACGACATCAGAGAAAGAGGCATTAAGATCTTCTTGATCTCTTCCCGGAAAGAATATCTCAGGTCTGCCACCGTCGACAACCTCATCCAAGCCGGTTACTATGGCTGGTCCAACCTAATGCTCAGGGGGCTAGAAGATCAGCAAAAGGAAGTGAAACAATACAAGTCAGAGAAGAGAAAATGGCTAATGAGTCTTGGTTACAGAGTCTGGGGAGTGATGGGTGACCAATGGAGTAGCTTTGCAGGCTGTCCTCTTCCCAGGAGAACCTTCAAGCTCCCTAACTCCATCTACTATGTCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

271

Amino Acids

31.1

Weight (kDa)

9.22

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 43 - 270 3.8e-86 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 217
AccI GTMKAC 1 cut(s) 588
AclWI GGATC 2 cut(s) 185, 371
AcsI RAATTY 1 cut(s) 452
AcyI GRCGYC 1 cut(s) 257
AfaI GTAC 2 cut(s) 269, 512
AgsI TTSAA 3 cut(s) 82, 442, 784
AjiI CACGTC 1 cut(s) 280
AjnI CCWGG 1 cut(s) 770
AluBI AGCT 4 cut(s) 62, 171, 750, 787
AluI AGCT 4 cut(s) 62, 171, 750, 787
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 2 cut(s) 185, 371
AlwNI CAGNNNCTG 1 cut(s) 720
ApoI RAATTY 1 cut(s) 452
AspS9I GGNCC 3 cut(s) 4, 148, 621
AsuC2I CCSGG 1 cut(s) 559
AsuHPI GGTGA 2 cut(s) 77, 746
AvaII GGWCC 3 cut(s) 4, 148, 621
BanI GGYRCC 1 cut(s) 217
BarI GAAGNNNNNNTAC 2 cut(s) 494, 526
BccI CCATC 3 cut(s) 404, 724, 806
BceAI ACGGC 1 cut(s) 364
BciT130I CCWGG 1 cut(s) 772
BciVI GTATCC 2 cut(s) 152, 459
BcnI CCSGG 1 cut(s) 559
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 1 cut(s) 644
BfmI CTRYAG 1 cut(s) 328
BfuI GTATCC 2 cut(s) 152, 459
BglII AGATCT 1 cut(s) 540
Bme1390I CCNGG 2 cut(s) 559, 772
Bme18I GGWCC 3 cut(s) 4, 148, 621
BmgBI CACGTC 1 cut(s) 280
BmgT120I GGNCC 3 cut(s) 4, 148, 621
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 2 cut(s) 559, 772
BpmI CTGGAG 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 635
BpuEI CTTGAG 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 559
Bsa29I ATCGAT 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 770
Bse118I RCCGGY 1 cut(s) 605
Bse1I ACTGG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 772
BseCI ATCGAT 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 770
BseGI GGATG 3 cut(s) 280, 396, 597
BseMII CTCAG 4 cut(s) 72, 103, 586, 649
BseNI ACTGG 1 cut(s) 74
BseRI GAGGAG 1 cut(s) 444
BshNI GGYRCC 1 cut(s) 217
BshVI ATCGAT 1 cut(s) 375
BsiSI CCGG 2 cut(s) 559, 606
BsmAI GTCTC 1 cut(s) 61
BsmBI CGTCTC 1 cut(s) 61
Bsp143I GATC 5 cut(s) 177, 363, 540, 549, 649
BspCNI CTCAG 4 cut(s) 71, 102, 585, 648
BspDI ATCGAT 1 cut(s) 375
BspLI GGNNCC 1 cut(s) 219
BspPI GGATC 2 cut(s) 185, 371
BspT107I GGYRCC 1 cut(s) 217
BsrFI RCCGGY 1 cut(s) 605
BsrI ACTGG 1 cut(s) 74
BssAI RCCGGY 1 cut(s) 605
BssECI CCNNGG 1 cut(s) 770
BssMI GATC 5 cut(s) 177, 363, 540, 549, 649
BssNI GRCGYC 1 cut(s) 257
Bst2UI CCWGG 1 cut(s) 772
Bst4CI ACNGT 3 cut(s) 164, 292, 586
Bst6I CTCTTC 3 cut(s) 559, 680, 771
BstACI GRCGYC 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 757
BstDEI CTNAG 5 cut(s) 58, 89, 339, 572, 635
BstEII GGTNACC 1 cut(s) 734
BstF5I GGATG 3 cut(s) 280, 396, 597
BstKTI GATC 5 cut(s) 180, 366, 543, 552, 652
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 5 cut(s) 177, 363, 540, 549, 649
BstMWI GCNNNNNNNGC 2 cut(s) 640, 756
BstNI CCWGG 1 cut(s) 772
BstNSI RCATGY 1 cut(s) 325
BstPI GGTNACC 1 cut(s) 734
BstSCI CCNGG 2 cut(s) 557, 770
BstSFI CTRYAG 1 cut(s) 328
BstX2I RGATCY 2 cut(s) 363, 540
BstYI RGATCY 2 cut(s) 363, 540
Bsu15I ATCGAT 1 cut(s) 375
BsuI GTATCC 2 cut(s) 152, 459
BsuTUI ATCGAT 1 cut(s) 375
BtgZI GCGATG 1 cut(s) 246
BtrI CACGTC 1 cut(s) 280
BtsCI GGATG 3 cut(s) 280, 396, 597
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 1 cut(s) 495
Cac8I GCNNGC 1 cut(s) 757
CaiI CAGNNNCTG 1 cut(s) 720
Cfr10I RCCGGY 1 cut(s) 605
Cfr13I GGNCC 3 cut(s) 4, 148, 621
ClaI ATCGAT 1 cut(s) 375
CseI GACGC 1 cut(s) 365
Csp6I GTAC 2 cut(s) 268, 511
CviAII CATG 5 cut(s) 13, 253, 322, 352, 499
CviQI GTAC 2 cut(s) 268, 511
DdeI CTNAG 5 cut(s) 58, 89, 339, 572, 635
DpnI GATC 5 cut(s) 179, 365, 542, 551, 651
DpnII GATC 5 cut(s) 177, 363, 540, 549, 649
Eam1104I CTCTTC 3 cut(s) 559, 680, 771
EarI CTCTTC 3 cut(s) 559, 680, 771
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 3 cut(s) 4, 148, 621
Eco91I GGTNACC 1 cut(s) 734
EcoO65I GGTNACC 1 cut(s) 734
EcoRII CCWGG 1 cut(s) 770
EcoRV GATATC 1 cut(s) 373
Esp3I CGTCTC 1 cut(s) 61
FaeI CATG 5 cut(s) 16, 256, 325, 355, 502
FaiI YATR 7 cut(s) 14, 254, 323, 353, 500, 615, 807
FalI AAGNNNNNCTT 2 cut(s) 530, 562
FatI CATG 5 cut(s) 12, 252, 321, 351, 498
FblI GTMKAC 1 cut(s) 588
FokI GGATG 3 cut(s) 287, 383, 584
FspBI CTAG 1 cut(s) 644
GsuI CTGGAG 1 cut(s) 193
HapII CCGG 2 cut(s) 559, 606
HgaI GACGC 1 cut(s) 365
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 5 cut(s) 16, 256, 325, 355, 502
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HinfI GANTC 4 cut(s) 51, 96, 703, 717
HpaII CCGG 2 cut(s) 559, 606
HphI GGTGA 2 cut(s) 77, 746
Hpy166II GTNNAC 2 cut(s) 193, 589
Hpy188I TCNGA 6 cut(s) 50, 92, 203, 428, 524, 682
Hpy188III TCNNGA 5 cut(s) 79, 142, 224, 316, 547
Hpy8I GTNNAC 2 cut(s) 193, 589
Hpy99I CGWCG 1 cut(s) 590
HpyAV CCTTC 1 cut(s) 790
HpyCH4III ACNGT 3 cut(s) 164, 292, 586
HpyCH4IV ACGT 3 cut(s) 183, 257, 279
HpyCH4V TGCA 1 cut(s) 755
HpyF10VI GCNNNNNNNGC 2 cut(s) 640, 756
HpyF3I CTNAG 5 cut(s) 58, 89, 339, 572, 635
HpySE526I ACGT 3 cut(s) 183, 257, 279
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 5 cut(s) 16, 256, 325, 355, 502
Kzo9I GATC 5 cut(s) 177, 363, 540, 549, 649
LmnI GCTCC 2 cut(s) 318, 792
MaeI CTAG 1 cut(s) 644
MaeII ACGT 3 cut(s) 183, 257, 279
MaeIII GTNAC 5 cut(s) 65, 344, 608, 710, 734
MalI GATC 5 cut(s) 179, 365, 542, 551, 651
MboI GATC 5 cut(s) 177, 363, 540, 549, 649
MflI RGATCY 2 cut(s) 363, 540
MluCI AATT 3 cut(s) 437, 452, 506
MlyI GAGTC 4 cut(s) 60, 90, 712, 726
MmeI TCCRAC 2 cut(s) 28, 648
MseI TTAA 2 cut(s) 243, 537
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 2 cut(s) 559, 606
MspR9I CCNGG 2 cut(s) 559, 772
MvaI CCWGG 1 cut(s) 772
MwoI GCNNNNNNNGC 2 cut(s) 640, 756
NciI CCSGG 1 cut(s) 559
NdeII GATC 5 cut(s) 177, 363, 540, 549, 649
NlaIII CATG 5 cut(s) 16, 256, 325, 355, 502
NlaIV GGNNCC 1 cut(s) 219
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 3 cut(s) 65, 344, 734
NspI RCATGY 1 cut(s) 325
PfoI TCCNGGA 1 cut(s) 557
PleI GAGTC 4 cut(s) 59, 90, 711, 725
PpsI GAGTC 4 cut(s) 59, 90, 711, 725
Psp6I CCWGG 1 cut(s) 770
PspEI GGTNACC 1 cut(s) 734
PspGI CCWGG 1 cut(s) 770
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 3 cut(s) 4, 148, 621
PstNI CAGNNNCTG 1 cut(s) 720
PsuI RGATCY 2 cut(s) 363, 540
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 2 cut(s) 269, 512
RsaNI GTAC 2 cut(s) 268, 511
SalI GTCGAC 1 cut(s) 587
SaqAI TTAA 2 cut(s) 243, 537
Sau3AI GATC 5 cut(s) 177, 363, 540, 549, 649
Sau96I GGNCC 3 cut(s) 4, 148, 621
SchI GAGTC 4 cut(s) 60, 90, 712, 726
ScrFI CCNGG 2 cut(s) 559, 772
SfcI CTRYAG 1 cut(s) 328
SinI GGWCC 3 cut(s) 4, 148, 621
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 3 cut(s) 437, 452, 506
SspMI CTAG 1 cut(s) 644
StyD4I CCNGG 2 cut(s) 557, 770
TaaI ACNGT 3 cut(s) 164, 292, 586
TaiI ACGT 3 cut(s) 186, 260, 282
TaqI TCGA 4 cut(s) 210, 375, 456, 588
TaqII GACCGA 1 cut(s) 21
TasI AATT 3 cut(s) 437, 452, 506
TatI WGTACW 1 cut(s) 267
Tru1I TTAA 2 cut(s) 243, 537
Tru9I TTAA 2 cut(s) 243, 537
TscAI CASTG 1 cut(s) 495
TseFI GTSAC 3 cut(s) 65, 344, 734
Tsp45I GTSAC 3 cut(s) 65, 344, 734
TspDTI ATGAA 2 cut(s) 299, 515
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 1 cut(s) 495
VpaK11BI GGWCC 3 cut(s) 4, 148, 621
XapI RAATTY 1 cut(s) 452
XceI RCATGY 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 413
XmiI GTMKAC 1 cut(s) 588
XspI CTAG 1 cut(s) 644
ZraI GACGTC 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.