Rmu_sc0001827.1_g000003

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001827.1
OG0002586
Physical Location & Seq
Forward (+)
11282 .. 11949
668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001827.1_g000003.1.cds

Sequence Viewer

Length: 486 bp
atgttgagctgcataacattagagagttccaagtggtgccttggaaaatatgttacttcgactcagtacaaagtggactcagacagggctattgaggagtccattgtgtatctaagaactagctgtaatttgaagaatgatggtacaggtgcatggatttttgacattgatgatacactgctctctattgtgccttactacaagggacatcatttcgggggtgagaagttgaacctgagtactttggaggagtggatgagccatggcaaggcacctactctggatcactcactcaaactattcaatgagatcaaacccagagggctgctgatcattctggtttcttcaaggagggagcatcttaaatcagccacaatgtacaaccttctccatgttggctcttatggatggacaagtctcattttaaggtcagttcttctctcactcaatcacataatatatagagaggtcaaatcttgtgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

161

Amino Acids

18.31

Weight (kDa)

8.32

Isoelectric Point (pI)

37.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 36, 271
AclWI GGATC 1 cut(s) 291
AfaI GTAC 4 cut(s) 68, 145, 241, 380
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 4 cut(s) 133, 232, 304, 348
AluBI AGCT 2 cut(s) 9, 123
AluI AGCT 2 cut(s) 9, 123
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 1 cut(s) 291
ApeKI GCWGC 2 cut(s) 9, 325
AsuHPI GGTGA 1 cut(s) 233
BanI GGYRCC 2 cut(s) 36, 271
BbvI GCAGC 1 cut(s) 312
BccI CCATC 2 cut(s) 134, 402
BclI TGATCA 1 cut(s) 330
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 1 cut(s) 120
BisI GCNGC 2 cut(s) 10, 326
BlsI GCNGC 2 cut(s) 11, 327
BmcAI AGTACT 1 cut(s) 241
BmiI GGNNCC 2 cut(s) 38, 273
BmsI GCATC 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 40, 262
Bsc4I CCNNNNNNNGG 1 cut(s) 268
BseDI CCNNGG 2 cut(s) 40, 262
BseGI GGATG 2 cut(s) 261, 413
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMII CTCAG 3 cut(s) 77, 93, 227
BseRI GAGGAG 2 cut(s) 110, 263
BseXI GCAGC 1 cut(s) 312
BshNI GGYRCC 2 cut(s) 36, 271
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 219
Bsp1407I TGTACA 1 cut(s) 378
Bsp143I GATC 3 cut(s) 283, 309, 330
Bsp19I CCATGG 1 cut(s) 262
BspCNI CTCAG 3 cut(s) 76, 92, 228
BspLI GGNNCC 2 cut(s) 38, 273
BspPI GGATC 1 cut(s) 291
BspT107I GGYRCC 2 cut(s) 36, 271
BsrGI TGTACA 1 cut(s) 378
BssECI CCNNGG 2 cut(s) 40, 262
BssMI GATC 3 cut(s) 283, 309, 330
BssT1I CCWWGG 2 cut(s) 40, 262
BstAUI TGTACA 1 cut(s) 378
BstDEI CTNAG 4 cut(s) 63, 79, 113, 236
BstDSI CCRYGG 1 cut(s) 262
BstF5I GGATG 2 cut(s) 261, 413
BstKTI GATC 3 cut(s) 286, 312, 333
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 3 cut(s) 283, 309, 330
BstV1I GCAGC 1 cut(s) 312
BtgI CCRYGG 1 cut(s) 262
BtsCI GGATG 2 cut(s) 261, 413
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 176
Csp6I GTAC 4 cut(s) 67, 144, 240, 379
CviAII CATG 3 cut(s) 153, 263, 392
CviJI RGCY 7 cut(s) 9, 89, 123, 261, 325, 371, 399
CviKI_1 RGCY 7 cut(s) 9, 89, 123, 261, 325, 371, 399
CviQI GTAC 4 cut(s) 67, 144, 240, 379
DdeI CTNAG 4 cut(s) 63, 79, 113, 236
DpnI GATC 3 cut(s) 285, 311, 332
DpnII GATC 3 cut(s) 283, 309, 330
Eco130I CCWWGG 2 cut(s) 40, 262
EcoT14I CCWWGG 2 cut(s) 40, 262
ErhI CCWWGG 2 cut(s) 40, 262
FaeI CATG 3 cut(s) 156, 266, 395
FaiI YATR 9 cut(s) 14, 51, 154, 264, 393, 405, 455, 460, 462
FaqI GGGAC 1 cut(s) 219
FatI CATG 3 cut(s) 152, 262, 391
FbaI TGATCA 1 cut(s) 330
Fnu4HI GCNGC 2 cut(s) 10, 326
FokI GGATG 2 cut(s) 268, 420
Fsp4HI GCNGC 2 cut(s) 10, 326
FspBI CTAG 1 cut(s) 120
GluI GCNGC 2 cut(s) 10, 326
Hin1II CATG 3 cut(s) 156, 266, 395
HinfI GANTC 3 cut(s) 61, 77, 98
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 395
HpyCH4V TGCA 2 cut(s) 12, 152
HpyF3I CTNAG 4 cut(s) 63, 79, 113, 236
Hsp92II CATG 3 cut(s) 156, 266, 395
Ksp22I TGATCA 1 cut(s) 330
Kzo9I GATC 3 cut(s) 283, 309, 330
LmnI GCTCC 1 cut(s) 355
LpnPI CCDG 6 cut(s) 70, 132, 248, 266, 323, 331
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 1 cut(s) 367
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 52
MalI GATC 3 cut(s) 285, 311, 332
MboI GATC 3 cut(s) 283, 309, 330
MboII GAAGA 3 cut(s) 145, 336, 428
MluCI AATT 1 cut(s) 127
MlyI GAGTC 3 cut(s) 55, 71, 107
MnlI CCTC 5 cut(s) 88, 241, 314, 345, 460
MseI TTAA 2 cut(s) 363, 425
NcoI CCATGG 1 cut(s) 262
NdeII GATC 3 cut(s) 283, 309, 330
NlaIII CATG 3 cut(s) 156, 266, 395
NlaIV GGNNCC 2 cut(s) 38, 273
PkrI GCNGC 2 cut(s) 11, 327
PleI GAGTC 3 cut(s) 55, 71, 106
PpsI GAGTC 3 cut(s) 55, 71, 106
PspN4I GGNNCC 2 cut(s) 38, 273
RsaI GTAC 4 cut(s) 68, 145, 241, 380
RsaNI GTAC 4 cut(s) 67, 144, 240, 379
SaqAI TTAA 2 cut(s) 363, 425
SatI GCNGC 2 cut(s) 10, 326
Sau3AI GATC 3 cut(s) 283, 309, 330
ScaI AGTACT 1 cut(s) 241
SchI GAGTC 3 cut(s) 55, 71, 107
SetI ASST 8 cut(s) 11, 125, 151, 237, 277, 387, 431, 471
SfaNI GCATC 1 cut(s) 367
Sse9I AATT 1 cut(s) 127
SspMI CTAG 1 cut(s) 120
StyI CCWWGG 2 cut(s) 40, 262
TaqI TCGA 1 cut(s) 59
TasI AATT 1 cut(s) 127
TatI WGTACW 3 cut(s) 66, 239, 378
Tru1I TTAA 2 cut(s) 363, 425
Tru9I TTAA 2 cut(s) 363, 425
TscAI CASTG 1 cut(s) 183
TseI GCWGC 2 cut(s) 9, 325
TspRI CASTG 1 cut(s) 183
XspI CTAG 1 cut(s) 120
ZrmI AGTACT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.