Rroxscaffold_5G00340010

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002586
Physical Location & Seq
Reverse (-)
8391353 .. 8391769
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00340010.1

Sequence Viewer

Length: 342 bp
ATGGCAAGGCACCTGCTCTGGATCACTCACTCACTGTTCAATGTGATCAAAGCCAGAGGGCTGCAGATCATTCTGGTTTCTTCAAGGAGGGAGCGTCTTAGATCAGCCACAATAAACAACCTTCTCCATGTTGGCTTTTATGGATGGACAAGTCTCATTTTAAGGGGTCCTGAGGATGAAGTGAAGGGGGTGCAAGATTTCAAAGCTGATGTGAGGAAACAATTGATGGTTGGTGGATACAGAGTTTGGGGCATATTGGGAGATCAATATAGCAGCATTGAGGGACTTCCAAGAGCCACAAGGACATTCAAACTTCCAAACCCATTGCACTATGTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

113

Amino Acids

12.94

Weight (kDa)

10.46

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 11 - 112 6.8e-27 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 21
Acc36I ACCTGC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 9
AclWI GGATC 1 cut(s) 29
AgsI TTSAA 4 cut(s) 40, 84, 202, 310
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 1 cut(s) 29
ApeKI GCWGC 2 cut(s) 61, 273
AspS9I GGNCC 1 cut(s) 167
AvaII GGWCC 1 cut(s) 167
AxyI CCTNAGG 1 cut(s) 171
BanI GGYRCC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 48, 285
BccI CCATC 2 cut(s) 138, 220
BciVI GTATCC 1 cut(s) 230
BclI TGATCA 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 62
BfuAI ACCTGC 1 cut(s) 21
BfuI GTATCC 1 cut(s) 230
BisI GCNGC 2 cut(s) 62, 274
BlsI GCNGC 2 cut(s) 63, 275
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 2 cut(s) 11, 168
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bse21I CCTNAGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 323
BseGI GGATG 2 cut(s) 149, 181
BseMI GCAATG 1 cut(s) 323
BseMII CTCAG 1 cut(s) 162
BseXI GCAGC 2 cut(s) 48, 285
BshNI GGYRCC 1 cut(s) 9
BslFI GGGAC 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 297
Bsp143I GATC 5 cut(s) 21, 45, 66, 101, 262
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 2 cut(s) 11, 168
BspMAI CTGCAG 1 cut(s) 66
BspMI ACCTGC 1 cut(s) 21
BspPI GGATC 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 9
BsrDI GCAATG 1 cut(s) 323
BssMI GATC 5 cut(s) 21, 45, 66, 101, 262
Bst4CI ACNGT 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 98, 171
BstF5I GGATG 2 cut(s) 149, 181
BstKTI GATC 5 cut(s) 24, 48, 69, 104, 265
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 5 cut(s) 21, 45, 66, 101, 262
BstSFI CTRYAG 1 cut(s) 62
BstV1I GCAGC 2 cut(s) 48, 285
Bsu36I CCTNAGG 1 cut(s) 171
BsuI GTATCC 1 cut(s) 230
BtsCI GGATG 2 cut(s) 149, 181
BtsIMutI CAGTG 1 cut(s) 32
BveI ACCTGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 167
CseI GACGC 1 cut(s) 83
CviAII CATG 1 cut(s) 128
CviJI RGCY 6 cut(s) 53, 61, 107, 135, 206, 296
CviKI_1 RGCY 6 cut(s) 53, 61, 107, 135, 206, 296
DdeI CTNAG 2 cut(s) 98, 171
DpnI GATC 5 cut(s) 23, 47, 68, 103, 264
DpnII GATC 5 cut(s) 21, 45, 66, 101, 262
Eco47I GGWCC 1 cut(s) 167
Eco81I CCTNAGG 1 cut(s) 171
EcoO109I RGGNCCY 1 cut(s) 167
FaeI CATG 1 cut(s) 131
FaiI YATR 5 cut(s) 129, 141, 254, 270, 333
FaqI GGGAC 1 cut(s) 297
FatI CATG 1 cut(s) 127
FbaI TGATCA 1 cut(s) 45
Fnu4HI GCNGC 2 cut(s) 62, 274
FokI GGATG 2 cut(s) 156, 188
Fsp4HI GCNGC 2 cut(s) 62, 274
GluI GCNGC 2 cut(s) 62, 274
HgaI GACGC 1 cut(s) 83
Hin1II CATG 1 cut(s) 131
Hpy188III TCNNGA 3 cut(s) 19, 170, 339
HpyAV CCTTC 2 cut(s) 131, 178
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4V TGCA 3 cut(s) 64, 193, 328
HpyF3I CTNAG 2 cut(s) 98, 171
Hsp92II CATG 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 5 cut(s) 21, 45, 66, 101, 262
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 5 cut(s) 4, 26, 59, 67, 183
Lsp1109I GCAGC 2 cut(s) 48, 285
MalI GATC 5 cut(s) 23, 47, 68, 103, 264
MboI GATC 5 cut(s) 21, 45, 66, 101, 262
MboII GAAGA 1 cut(s) 72
MfeI CAATTG 1 cut(s) 221
MluCI AATT 1 cut(s) 221
MnlI CCTC 5 cut(s) 50, 81, 166, 207, 274
MseI TTAA 1 cut(s) 161
MunI CAATTG 1 cut(s) 221
NdeII GATC 5 cut(s) 21, 45, 66, 101, 262
NlaIII CATG 1 cut(s) 131
NlaIV GGNNCC 2 cut(s) 11, 168
PaqCI CACCTGC 1 cut(s) 21
PkrI GCNGC 2 cut(s) 63, 275
PpuMI RGGWCCY 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 167
PspN4I GGNNCC 2 cut(s) 11, 168
PspPI GGNCC 1 cut(s) 167
PspPPI RGGWCCY 1 cut(s) 167
PstI CTGCAG 1 cut(s) 66
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 2 cut(s) 62, 274
Sau3AI GATC 5 cut(s) 21, 45, 66, 101, 262
Sau96I GGNCC 1 cut(s) 167
SetI ASST 3 cut(s) 15, 123, 208
SfcI CTRYAG 1 cut(s) 62
SinI GGWCC 1 cut(s) 167
Sse9I AATT 1 cut(s) 221
TaaI ACNGT 1 cut(s) 36
TasI AATT 1 cut(s) 221
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 1 cut(s) 39
TseI GCWGC 2 cut(s) 61, 273
TspDTI ATGAA 1 cut(s) 192
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.