Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008415.1

Orthogroup ID

OG0002586

Physical Location & Seq

Genomic Coordinates Reverse (-)

4044 .. 4500

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008415.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgaaagagagcaaggcaccagctctagagcacacattaaagctcttccatgatatcaaagacagaggatttaagatctttctcatctcttcaagaagggagacccttagatctccaagtgtagataacctcattaaggttggataccatggatggactaatcttgtgctaaggggtcttgaagatgaattcatggaagtgcagaagtacaagtctgaggcaaggcatcgactcgtcgatgaaggttaccgcatttggggcataataggagatcagtggagcagtttcgagggacttcccattgcgaaaagaacattcaaactacccaattcaatgtactatgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

115

Amino Acids

13.53

Weight (kDa)

9.39

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04040 AT5G44020
fragaria_vesca	FvH4_2g20720
malus_domestica	MD00G1060800.v1.1
prunus_persica	Prupe.1G046900_v2.0.a1 Prupe.8G216700_v2.0.a1
pyrus_communis	pycom05g17430 pycom10g15320 pycom16g18830
rosa_chinensis	RchiOBHm_Chr4g0395031 RchiOBHm_Chr4g0395081 RchiOBHm_Chr4g0395141 RchiOBHm_Chr6g0286901
rosa_laevigata	RLG00000012528
rosa_multiflora	Rmu_sc0000734.1_g000001 Rmu_sc0001827.1_g000003 Rmu_sc0002520.1_g000008 Rmu_sc0007570.1_g000003 Rmu_sc0008415.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340010 Rroxscaffold_5G00340020 Rroxscaffold_5G00340080 Rroxscaffold_7G00181820
rosa_rugosa	Rorug03G0359700.1 Rorug06G0184700
rosa_samantha	Rh4AG056700 Rh4BG055400 Rh4BG055600 Rh4CG061500 Rh4CG061600 Rh4CG061800 Rh6AG296600 Rh6BG301200 Rh6CG308600 Rh6CG308700 Rh6DG292400 Rh6DG292500
rosa_wichuraiana	Rw4G004550 Rw4G004570 Rw6G025590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	16
AciI	CCGC	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	188
AfaI	GTAC	2 cut(s)	209, 338
AfiI	CCNNNNNNNGG	2 cut(s)	136, 256
AgsI	TTSAA	4 cut(s)	93, 182, 319, 333
AluBI	AGCT	2 cut(s)	23, 43
AluI	AGCT	2 cut(s)	23, 43
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	95
ApoI	RAATTY	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	33
BccI	CCATC	1 cut(s)	147
BciVI	GTATCC	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	2 cut(s)	26, 346
BfuI	GTATCC	1 cut(s)	137
BglII	AGATCT	2 cut(s)	75, 110
BmiI	GGNNCC	1 cut(s)	18
BmsI	GCATC	1 cut(s)	235
Bpu10I	CCTNAGC	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 256
Bse3DI	GCAATG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	158
BseLI	CCNNNNNNNGG	2 cut(s)	136, 256
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	207
BsgI	GTGCAG	1 cut(s)	221
BshNI	GGYRCC	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	136, 256
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	306
Bso31I	GGTCTC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	3 cut(s)	75, 110, 271
Bsp19I	CCATGG	1 cut(s)	148
BspACI	CCGC	1 cut(s)	250
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	18
BspQI	GCTCTTC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	3 cut(s)	75, 110, 271
BssT1I	CCWWGG	1 cut(s)	148
Bst6I	CTCTTC	2 cut(s)	50, 94
BstDEI	CTNAG	3 cut(s)	107, 170, 216
BstDSI	CCRYGG	1 cut(s)	148
BstEII	GGTNACC	1 cut(s)	245
BstENI	CCTNNNNNAGG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	158
BstKTI	GATC	3 cut(s)	78, 113, 274
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	3 cut(s)	75, 110, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstPI	GGTNACC	1 cut(s)	245
BstX2I	RGATCY	2 cut(s)	75, 110
BstYI	RGATCY	2 cut(s)	75, 110
BsuI	GTATCC	1 cut(s)	137
BtgI	CCRYGG	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	281
Csp6I	GTAC	2 cut(s)	208, 337
CviAII	CATG	3 cut(s)	50, 149, 193
CviJI	RGCY	2 cut(s)	23, 43
CviKI_1	RGCY	2 cut(s)	23, 43
CviQI	GTAC	2 cut(s)	208, 337
DdeI	CTNAG	3 cut(s)	107, 170, 216
DpnI	GATC	3 cut(s)	77, 112, 273
DpnII	GATC	3 cut(s)	75, 110, 271
Eam1104I	CTCTTC	2 cut(s)	50, 94
EarI	CTCTTC	2 cut(s)	50, 94
Eco130I	CCWWGG	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	95
Eco32I	GATATC	1 cut(s)	55
Eco91I	GGTNACC	1 cut(s)	245
EcoNI	CCTNNNNNAGG	1 cut(s)	134
EcoO65I	GGTNACC	1 cut(s)	245
EcoRI	GAATTC	1 cut(s)	188
EcoRV	GATATC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	3 cut(s)	53, 152, 196
FaiI	YATR	5 cut(s)	51, 150, 194, 263, 342
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	3 cut(s)	49, 148, 192
FokI	GGATG	1 cut(s)	165
FspBI	CTAG	2 cut(s)	26, 346
Hin1II	CATG	3 cut(s)	53, 152, 196
HinfI	GANTC	1 cut(s)	231
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	3 cut(s)	26, 93, 179
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	90, 236
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	3 cut(s)	107, 170, 216
Hsp92II	CATG	3 cut(s)	53, 152, 196
Kzo9I	GATC	3 cut(s)	75, 110, 271
LguI	GCTCTTC	1 cut(s)	50
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	1 cut(s)	33
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	2 cut(s)	26, 346
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	3 cut(s)	77, 112, 273
MboI	GATC	3 cut(s)	75, 110, 271
MboII	GAAGA	3 cut(s)	37, 81, 194
MflI	RGATCY	2 cut(s)	75, 110
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	2 cut(s)	188, 328
MlyI	GAGTC	1 cut(s)	225
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	4 cut(s)	59, 140, 211, 283
MseI	TTAA	3 cut(s)	38, 72, 135
MslI	CAYNNNNRTG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	258
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	3 cut(s)	75, 110, 271
NlaIII	CATG	3 cut(s)	53, 152, 196
NlaIV	GGNNCC	1 cut(s)	18
PciSI	GCTCTTC	1 cut(s)	50
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
PspEI	GGTNACC	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	18
PsuI	RGATCY	2 cut(s)	75, 110
RsaI	GTAC	2 cut(s)	209, 338
RsaNI	GTAC	2 cut(s)	208, 337
RseI	CAYNNNNRTG	1 cut(s)	197
SapI	GCTCTTC	1 cut(s)	50
SaqAI	TTAA	3 cut(s)	38, 72, 135
Sau3AI	GATC	3 cut(s)	75, 110, 271
SchI	GAGTC	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	5 cut(s)	25, 45, 132, 141, 247
SfaNI	GCATC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	188, 328
SsiI	CCGC	1 cut(s)	250
SspMI	CTAG	2 cut(s)	26, 346
StyI	CCWWGG	1 cut(s)	148
TaqI	TCGA	3 cut(s)	229, 237, 288
TasI	AATT	2 cut(s)	188, 328
TatI	WGTACW	2 cut(s)	207, 336
Tru1I	TTAA	3 cut(s)	38, 72, 135
Tru9I	TTAA	3 cut(s)	38, 72, 135
TscAI	CASTG	1 cut(s)	281
TspDTI	ATGAA	4 cut(s)	17, 181, 201, 255
TspRI	CASTG	1 cut(s)	281
XagI	CCTNNNNNAGG	1 cut(s)	134
XapI	RAATTY	1 cut(s)	188
XbaI	TCTAGA	1 cut(s)	25
XspI	CTAG	2 cut(s)	26, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.