Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000734.1

Orthogroup ID

OG0002586

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 914

Gene Structure 913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000734.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgaatgtagagctgcacaacattagagagttccaagtggtgcctgaagagtgcataggatacgttggaaaatatgttacttcgactcagtacaaggtggactcagaaagggctattgaggagtccattgtgtatataagcactggctgtaatttgaagaatgatggtagagatgcatggatttttgacattgatgatacactgctctctactgtgccttactacaagggacatcatttcgggcacctgctctggatcactcactcactgttcaatgagatgaaagccagagggctgcagatcattctggtttcttcaaggagggagcgtcatagatcagccacaataaacaaccttctccatgttggcttttatggatggacaagtctcaatttaaggggtcctgaggatgaagtgaagggggtgaaagatttcaaagctgatgtgaggaaaaaattgacggttggtggatacagagtttggggcatattgggagatcaatatagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

169

Amino Acids

19.45

Weight (kDa)

7.06

Isoelectric Point (pI)

34.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04040 AT5G44020
fragaria_vesca	FvH4_2g20720
malus_domestica	MD00G1060800.v1.1
prunus_persica	Prupe.1G046900_v2.0.a1 Prupe.8G216700_v2.0.a1
pyrus_communis	pycom05g17430 pycom10g15320 pycom16g18830
rosa_chinensis	RchiOBHm_Chr4g0395031 RchiOBHm_Chr4g0395081 RchiOBHm_Chr4g0395141 RchiOBHm_Chr6g0286901
rosa_laevigata	RLG00000012528
rosa_multiflora	Rmu_sc0000734.1_g000001 Rmu_sc0001827.1_g000003 Rmu_sc0002520.1_g000008 Rmu_sc0007570.1_g000003 Rmu_sc0008415.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340010 Rroxscaffold_5G00340020 Rroxscaffold_5G00340080 Rroxscaffold_7G00181820
rosa_rugosa	Rorug03G0359700.1 Rorug06G0184700
rosa_samantha	Rh4AG056700 Rh4BG055400 Rh4BG055600 Rh4CG061500 Rh4CG061600 Rh4CG061800 Rh6AG296600 Rh6BG301200 Rh6CG308600 Rh6CG308700 Rh6DG292400 Rh6DG292500
rosa_wichuraiana	Rw4G004550 Rw4G004570 Rw6G025590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	255
AccB1I	GGYRCC	2 cut(s)	40, 243
AclWI	GGATC	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	1 cut(s)	92
AgsI	TTSAA	4 cut(s)	157, 274, 318, 436
AluBI	AGCT	2 cut(s)	13, 440
AluI	AGCT	2 cut(s)	13, 440
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	1 cut(s)	263
ApeKI	GCWGC	2 cut(s)	13, 295
Asp700I	GAANNNNTTC	1 cut(s)	431
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	401
AxyI	CCTNAGG	1 cut(s)	405
BaeGI	GKGCMC	1 cut(s)	246
BanI	GGYRCC	2 cut(s)	40, 243
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	2 cut(s)	158, 372
BciVI	GTATCC	2 cut(s)	53, 464
BcoDI	GTCTC	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	255
BfuI	GTATCC	2 cut(s)	53, 464
BisI	GCNGC	2 cut(s)	14, 296
BlsI	GCNGC	2 cut(s)	15, 297
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	3 cut(s)	42, 245, 402
BmsI	GCATC	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bse1I	ACTGG	1 cut(s)	148
Bse21I	CCTNAGG	1 cut(s)	405
BseGI	GGATG	2 cut(s)	383, 415
BseMII	CTCAG	3 cut(s)	101, 117, 396
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	282
BshNI	GGYRCC	2 cut(s)	40, 243
BslFI	GGGAC	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	392
BsmFI	GGGAC	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	4 cut(s)	255, 300, 335, 496
BspCNI	CTCAG	3 cut(s)	100, 116, 397
BspLI	GGNNCC	3 cut(s)	42, 245, 402
BspMAI	CTGCAG	1 cut(s)	300
BspMI	ACCTGC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	2 cut(s)	40, 243
BsrI	ACTGG	1 cut(s)	148
BssMI	GATC	4 cut(s)	255, 300, 335, 496
Bst4CI	ACNGT	3 cut(s)	214, 270, 463
Bst6I	CTCTTC	1 cut(s)	42
BstDEI	CTNAG	3 cut(s)	87, 103, 405
BstF5I	GGATG	2 cut(s)	383, 415
BstKTI	GATC	4 cut(s)	258, 303, 338, 499
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	4 cut(s)	255, 300, 335, 496
BstSFI	CTRYAG	1 cut(s)	296
BstSLI	GKGCMC	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	282
Bsu36I	CCTNAGG	1 cut(s)	405
BsuI	GTATCC	2 cut(s)	53, 464
BtsCI	GGATG	2 cut(s)	383, 415
BtsI	GCAGTG	1 cut(s)	200
BtsIMutI	CAGTG	3 cut(s)	141, 200, 266
BveI	ACCTGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	401
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	2 cut(s)	177, 362
CviJI	RGCY	8 cut(s)	13, 113, 147, 287, 295, 341, 369, 440
CviKI_1	RGCY	8 cut(s)	13, 113, 147, 287, 295, 341, 369, 440
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	3 cut(s)	87, 103, 405
DpnI	GATC	4 cut(s)	257, 302, 337, 498
DpnII	GATC	4 cut(s)	255, 300, 335, 496
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	401
Eco57I	CTGAAG	1 cut(s)	66
Eco81I	CCTNAGG	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	401
EcoT22I	ATGCAT	1 cut(s)	178
FaeI	CATG	2 cut(s)	180, 365
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	2 cut(s)	176, 361
Fnu4HI	GCNGC	2 cut(s)	14, 296
FokI	GGATG	2 cut(s)	390, 422
Fsp4HI	GCNGC	2 cut(s)	14, 296
GluI	GCNGC	2 cut(s)	14, 296
HgaI	GACGC	1 cut(s)	317
Hin1II	CATG	2 cut(s)	180, 365
HinfI	GANTC	3 cut(s)	85, 101, 122
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	2 cut(s)	253, 404
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	365, 412
HpyCH4III	ACNGT	3 cut(s)	214, 270, 463
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	4 cut(s)	16, 54, 176, 298
HpyF3I	CTNAG	3 cut(s)	87, 103, 405
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	180, 365
Kzo9I	GATC	4 cut(s)	255, 300, 335, 496
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	7 cut(s)	57, 129, 238, 260, 293, 301, 417
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	1 cut(s)	163
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	4 cut(s)	257, 302, 337, 498
MboI	GATC	4 cut(s)	255, 300, 335, 496
MboII	GAAGA	3 cut(s)	59, 169, 306
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	3 cut(s)	151, 391, 455
MlyI	GAGTC	3 cut(s)	79, 95, 131
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	5 cut(s)	112, 284, 315, 400, 441
Mph1103I	ATGCAT	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	431
MseI	TTAA	1 cut(s)	395
NdeII	GATC	4 cut(s)	255, 300, 335, 496
NlaIII	CATG	2 cut(s)	180, 365
NlaIV	GGNNCC	3 cut(s)	42, 245, 402
NsiI	ATGCAT	1 cut(s)	178
PaqCI	CACCTGC	1 cut(s)	255
PdmI	GAANNNNTTC	1 cut(s)	431
PkrI	GCNGC	2 cut(s)	15, 297
PleI	GAGTC	3 cut(s)	79, 95, 130
PpsI	GAGTC	3 cut(s)	79, 95, 130
PpuMI	RGGWCCY	1 cut(s)	401
Psp5II	RGGWCCY	1 cut(s)	401
PspN4I	GGNNCC	3 cut(s)	42, 245, 402
PspPI	GGNCC	1 cut(s)	401
PspPPI	RGGWCCY	1 cut(s)	401
PstI	CTGCAG	1 cut(s)	300
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	2 cut(s)	14, 296
Sau3AI	GATC	4 cut(s)	255, 300, 335, 496
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	3 cut(s)	79, 95, 131
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	6 cut(s)	15, 66, 99, 249, 357, 442
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	296
SinI	GGWCC	1 cut(s)	401
Sse9I	AATT	3 cut(s)	151, 391, 455
TaaI	ACNGT	3 cut(s)	214, 270, 463
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	83
TasI	AATT	3 cut(s)	151, 391, 455
TatI	WGTACW	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TscAI	CASTG	3 cut(s)	148, 207, 273
TseI	GCWGC	2 cut(s)	13, 295
TspDTI	ATGAA	3 cut(s)	17, 296, 426
TspRI	CASTG	3 cut(s)	148, 207, 273
VpaK11BI	GGWCC	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	431
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.