Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007570.1

Orthogroup ID

OG0002586

Physical Location & Seq

Genomic Coordinates Forward (+)

8801 .. 9100

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007570.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgggcggaaatctatgcctcttcttctgttgtttgagtttctttgttactctaacagtagcagagtcagagtggaacattttgagtcagagaaccaggaatgggatgaagatcagcttgaagacttactgtgagagctggaggatgaatgttgagctgcgcaacattagagagttccaagtggtgcctgaagagtgcataggatacgttggaaaatatgttacttcgactcagtacaaggtggactcagaaagggctattgaggagtccattgtgtatctaagcaggtacaagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

99

Amino Acids

11.65

Weight (kDa)

7.57

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04040 AT5G44020
fragaria_vesca	FvH4_2g20720
malus_domestica	MD00G1060800.v1.1
prunus_persica	Prupe.1G046900_v2.0.a1 Prupe.8G216700_v2.0.a1
pyrus_communis	pycom05g17430 pycom10g15320 pycom16g18830
rosa_chinensis	RchiOBHm_Chr4g0395031 RchiOBHm_Chr4g0395081 RchiOBHm_Chr4g0395141 RchiOBHm_Chr6g0286901
rosa_laevigata	RLG00000012528
rosa_multiflora	Rmu_sc0000734.1_g000001 Rmu_sc0001827.1_g000003 Rmu_sc0002520.1_g000008 Rmu_sc0007570.1_g000003 Rmu_sc0008415.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340010 Rroxscaffold_5G00340020 Rroxscaffold_5G00340080 Rroxscaffold_7G00181820
rosa_rugosa	Rorug03G0359700.1 Rorug06G0184700
rosa_samantha	Rh4AG056700 Rh4BG055400 Rh4BG055600 Rh4CG061500 Rh4CG061600 Rh4CG061800 Rh6AG296600 Rh6BG301200 Rh6CG308600 Rh6CG308700 Rh6DG292400 Rh6DG292500
rosa_wichuraiana	Rw4G004550 Rw4G004570 Rw6G025590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	161
Acc36I	ACCTGC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	184
AciI	CCGC	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	2 cut(s)	236, 290
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	3 cut(s)	117, 138, 157
AluI	AGCT	3 cut(s)	117, 138, 157
ApeKI	GCWGC	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	144
BciT130I	CCWGG	1 cut(s)	97
BciVI	GTATCC	1 cut(s)	197
BfuAI	ACCTGC	1 cut(s)	276
BfuI	GTATCC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
Bme1390I	CCNGG	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	128
BpmI	CTGGAG	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	97
BseGI	GGATG	2 cut(s)	111, 150
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	245, 261
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	144
BshNI	GGYRCC	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	1 cut(s)	6
BspCNI	CTCAG	2 cut(s)	244, 260
BspLI	GGNNCC	1 cut(s)	186
BspMI	ACCTGC	1 cut(s)	276
BspT107I	GGYRCC	1 cut(s)	184
BssMI	GATC	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	2 cut(s)	58, 131
Bst6I	CTCTTC	2 cut(s)	26, 186
BstDEI	CTNAG	3 cut(s)	231, 247, 281
BstF5I	GGATG	2 cut(s)	111, 150
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	111
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	144
BstV2I	GAAGAC	1 cut(s)	128
BsuI	GTATCC	1 cut(s)	197
BtsCI	GGATG	2 cut(s)	111, 150
BveI	ACCTGC	1 cut(s)	276
CfoI	GCGC	1 cut(s)	162
Csp6I	GTAC	2 cut(s)	235, 289
CviJI	RGCY	4 cut(s)	117, 138, 157, 257
CviKI_1	RGCY	4 cut(s)	117, 138, 157, 257
CviQI	GTAC	2 cut(s)	235, 289
DdeI	CTNAG	3 cut(s)	231, 247, 281
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
Eam1104I	CTCTTC	2 cut(s)	26, 186
EarI	CTCTTC	2 cut(s)	26, 186
EciI	GGCGGA	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	95
FaiI	YATR	3 cut(s)	16, 200, 219
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
Fnu4HI	GCNGC	1 cut(s)	158
FokI	GGATG	2 cut(s)	118, 157
Fsp4HI	GCNGC	1 cut(s)	158
FspI	TGCGCA	1 cut(s)	161
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	1 cut(s)	158
GsuI	CTGGAG	1 cut(s)	160
HhaI	GCGC	1 cut(s)	162
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	5 cut(s)	65, 85, 229, 245, 266
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	70, 90, 250
Hpy8I	GTNNAC	1 cut(s)	244
HpyCH4III	ACNGT	2 cut(s)	58, 131
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	198
HpyF3I	CTNAG	3 cut(s)	231, 247, 281
HpySE526I	ACGT	1 cut(s)	207
HspAI	GCGC	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	111
LpnPI	CCDG	5 cut(s)	82, 109, 124, 201, 271
Lsp1109I	GCAGC	1 cut(s)	144
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	46, 220
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	5 cut(s)	13, 16, 121, 133, 203
MlyI	GAGTC	5 cut(s)	74, 94, 223, 239, 275
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	3 cut(s)	29, 135, 256
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
NdeII	GATC	1 cut(s)	111
NlaIV	GGNNCC	1 cut(s)	186
NsbI	TGCGCA	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	159
PleI	GAGTC	5 cut(s)	73, 93, 223, 239, 274
PpsI	GAGTC	5 cut(s)	73, 93, 223, 239, 274
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	186
RsaI	GTAC	2 cut(s)	236, 290
RsaNI	GTAC	2 cut(s)	235, 289
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	1 cut(s)	111
SchI	GAGTC	5 cut(s)	74, 94, 223, 239, 275
ScrFI	CCNGG	1 cut(s)	97
SetI	ASST	6 cut(s)	119, 140, 159, 210, 243, 290
SgeI	CNNG	7 cut(s)	108, 109, 130, 151, 191, 200, 250
SsiI	CCGC	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	95
TaaI	ACNGT	2 cut(s)	58, 131
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	227
TatI	WGTACW	1 cut(s)	234
TseI	GCWGC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	122, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.