Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002586

Physical Location & Seq

Genomic Coordinates Reverse (-)

3318671 .. 3319979

Gene Structure 1309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G046900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAGCAGAAATAAAAGCGTGTTGTTAGGTTGTTTGAGTCTTATTATTTCTGTAGCAGTAGCAGGGCCAGAATGGAACATTTTGAGTCACAGAACCAAAGATGGACTGAGCATTAGCTTGAGAAACTACTGCGAGAGTTGGAGGATGAATGTCGAGCTGCACAACATCAGAGAGTTCCAAGTCGTGCCCGAAGAATGCGTCGGCTACATTGGAAAATATGTTACTTCAACTCAGTACAAGGTGGACTCAGAGAGGGCGATTGAGGAAGCTATTGTGTATCTGAGCACCAGCTGCAATTTGGAGAAAGATGGCAAAGATGCATGGATTTTCGACATCGACGATACGCTTCTTTCCACCGTGCCTTACTACAAGAAGCAACATTTCGGGGGTGAGAAGTTGAACCTGACTTCTCTGGAGGAATGGATGAGCCAGGGCAAGGCACCTGCTCTGGAAAACTCACTCAAACTCTTCAATGAGATGAAAGCCAGAGGGCTGCAGATCATTTTGGTTTCTTCAAGGAGGGAGCATCTCAGATCAGCCACAATTGACAACCTTGTCGATGTTGGCTACTATGGATGGACAAGTCTCATATTGAGGGGTCCTGATGATGAATTGATGGGGGTGCAAAATTACAAGACTGAAGTGAGAAAACAGTTGATTGGTGAAGGCTACCGCATTTGGGGCATTGTAGGAGATCAATATAGCAGTATTGAGGGGCTTCCAAGGGCCAAAAGAACATTCAAACTTCCAAACCCATTGTACTATGTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

258

Amino Acids

29.31

Weight (kDa)

6.46

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04040 AT5G44020
fragaria_vesca	FvH4_2g20720
malus_domestica	MD00G1060800.v1.1
prunus_persica	Prupe.1G046900_v2.0.a1 Prupe.8G216700_v2.0.a1
pyrus_communis	pycom05g17430 pycom10g15320 pycom16g18830
rosa_chinensis	RchiOBHm_Chr4g0395031 RchiOBHm_Chr4g0395081 RchiOBHm_Chr4g0395141 RchiOBHm_Chr6g0286901
rosa_laevigata	RLG00000012528
rosa_multiflora	Rmu_sc0000734.1_g000001 Rmu_sc0001827.1_g000003 Rmu_sc0002520.1_g000008 Rmu_sc0007570.1_g000003 Rmu_sc0008415.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340010 Rroxscaffold_5G00340020 Rroxscaffold_5G00340080 Rroxscaffold_7G00181820
rosa_rugosa	Rorug03G0359700.1 Rorug06G0184700
rosa_samantha	Rh4AG056700 Rh4BG055400 Rh4BG055600 Rh4CG061500 Rh4CG061600 Rh4CG061800 Rh6AG296600 Rh6BG301200 Rh6CG308600 Rh6CG308700 Rh6DG292400 Rh6DG292500
rosa_wichuraiana	Rw4G004550 Rw4G004570 Rw6G025590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	451
AasI	GACNNNNNNGTC	1 cut(s)	554
Acc36I	ACCTGC	1 cut(s)	451
AccB1I	GGYRCC	1 cut(s)	439
AciI	CCGC	1 cut(s)	673
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	2 cut(s)	236, 761
AfiI	CCNNNNNNNGG	2 cut(s)	436, 679
AgsI	TTSAA	5 cut(s)	228, 400, 472, 516, 742
AjnI	CCWGG	1 cut(s)	429
AjuI	GAANNNNNNNTTGG	2 cut(s)	722, 754
AluBI	AGCT	4 cut(s)	117, 157, 269, 291
AluI	AGCT	4 cut(s)	117, 157, 269, 291
Alw21I	GWGCWC	1 cut(s)	287
Alw26I	GTCTC	1 cut(s)	590
AoxI	GGCC	2 cut(s)	65, 726
ApeKI	GCWGC	3 cut(s)	157, 291, 493
ArsI	GACNNNNNNTTYG	2 cut(s)	183, 215
AspS9I	GGNCC	3 cut(s)	65, 599, 726
AsuHPI	GGTGA	2 cut(s)	401, 674
AvaII	GGWCC	1 cut(s)	599
BaeGI	GKGCMC	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	287
BbvI	GCAGC	3 cut(s)	144, 278, 480
BccI	CCATC	4 cut(s)	95, 302, 570, 610
BciT130I	CCWGG	1 cut(s)	431
BcoDI	GTCTC	1 cut(s)	590
BfmI	CTRYAG	2 cut(s)	51, 494
BfuAI	ACCTGC	1 cut(s)	451
BisI	GCNGC	3 cut(s)	158, 292, 494
BlsI	GCNGC	3 cut(s)	159, 293, 495
Bme1390I	CCNGG	1 cut(s)	431
Bme18I	GGWCC	1 cut(s)	599
BmgT120I	GGNCC	3 cut(s)	65, 599, 726
BmiI	GGNNCC	2 cut(s)	441, 600
BmrFI	CCNGG	1 cut(s)	431
BmsI	GCATC	2 cut(s)	307, 535
BpmI	CTGGAG	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	139
BsaJI	CCNNGG	2 cut(s)	430, 722
Bsc4I	CCNNNNNNNGG	2 cut(s)	436, 679
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	2 cut(s)	430, 722
BseGI	GGATG	3 cut(s)	150, 429, 581
BseLI	CCNNNNNNNGG	2 cut(s)	436, 679
BseMII	CTCAG	5 cut(s)	98, 245, 261, 272, 544
BseSI	GKGCMC	1 cut(s)	189
BseXI	GCAGC	3 cut(s)	144, 278, 480
BsgI	GTGCAG	1 cut(s)	143
BshFI	GGCC	2 cut(s)	67, 728
BshNI	GGYRCC	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	287
BslI	CCNNNNNNNGG	2 cut(s)	436, 679
BsmAI	GTCTC	1 cut(s)	590
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	67, 728
Bsp1286I	GDGCHC	2 cut(s)	189, 287
Bsp143I	GATC	3 cut(s)	498, 533, 694
BspACI	CCGC	1 cut(s)	673
BspANI	GGCC	2 cut(s)	67, 728
BspCNI	CTCAG	5 cut(s)	99, 244, 260, 273, 543
BspLI	GGNNCC	2 cut(s)	441, 600
BspMAI	CTGCAG	1 cut(s)	498
BspMI	ACCTGC	1 cut(s)	451
BspT107I	GGYRCC	1 cut(s)	439
BssECI	CCNNGG	2 cut(s)	430, 722
BssMI	GATC	3 cut(s)	498, 533, 694
BssT1I	CCWWGG	1 cut(s)	722
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	2 cut(s)	358, 654
Bst6I	CTCTTC	1 cut(s)	473
BstAPI	GCANNNNNTGC	1 cut(s)	291
BstDEI	CTNAG	5 cut(s)	107, 231, 247, 281, 530
BstF5I	GGATG	3 cut(s)	150, 429, 581
BstKTI	GATC	3 cut(s)	501, 536, 697
BstMAI	GTCTC	1 cut(s)	590
BstMBI	GATC	3 cut(s)	498, 533, 694
BstMWI	GCNNNNNNNGC	2 cut(s)	291, 681
BstNI	CCWGG	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	429
BstSFI	CTRYAG	2 cut(s)	51, 494
BstSLI	GKGCMC	1 cut(s)	189
BstV1I	GCAGC	3 cut(s)	144, 278, 480
BsuRI	GGCC	2 cut(s)	67, 728
BtsCI	GGATG	3 cut(s)	150, 429, 581
BveI	ACCTGC	1 cut(s)	451
Cfr13I	GGNCC	3 cut(s)	65, 599, 726
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	235, 760
CviAII	CATG	1 cut(s)	321
CviQI	GTAC	2 cut(s)	235, 760
DdeI	CTNAG	5 cut(s)	107, 231, 247, 281, 530
DpnI	GATC	3 cut(s)	500, 535, 696
DpnII	GATC	3 cut(s)	498, 533, 694
DrdI	GACNNNNNNGTC	1 cut(s)	554
DseDI	GACNNNNNNGTC	1 cut(s)	554
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	722
Eco47I	GGWCC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	660
EcoO109I	RGGNCCY	1 cut(s)	599
EcoRII	CCWGG	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	722
EcoT22I	ATGCAT	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	722
FaeI	CATG	1 cut(s)	324
FaiI	YATR	6 cut(s)	219, 322, 573, 590, 702, 765
FatI	CATG	1 cut(s)	320
Fnu4HI	GCNGC	3 cut(s)	158, 292, 494
FokI	GGATG	3 cut(s)	157, 436, 588
Fsp4HI	GCNGC	3 cut(s)	158, 292, 494
GluI	GCNGC	3 cut(s)	158, 292, 494
GsuI	CTGGAG	1 cut(s)	434
HaeIII	GGCC	2 cut(s)	67, 728
HgaI	GACGC	1 cut(s)	187
Hin1II	CATG	1 cut(s)	324
HinfI	GANTC	3 cut(s)	37, 85, 245
HphI	GGTGA	2 cut(s)	401, 674
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	4 cut(s)	170, 250, 282, 533
Hpy188III	TCNNGA	4 cut(s)	413, 449, 602, 771
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	2 cut(s)	203, 341
HpyAV	CCTTC	1 cut(s)	659
HpyCH4III	ACNGT	2 cut(s)	358, 654
HpyCH4V	TGCA	5 cut(s)	160, 294, 320, 496, 625
HpyF10VI	GCNNNNNNNGC	2 cut(s)	291, 681
HpyF3I	CTNAG	5 cut(s)	107, 231, 247, 281, 530
Hsp92II	CATG	1 cut(s)	324
Kzo9I	GATC	3 cut(s)	498, 533, 694
LmnI	GCTCC	1 cut(s)	523
Lsp1109I	GCAGC	3 cut(s)	144, 278, 480
LweI	GCATC	2 cut(s)	307, 535
MaeIII	GTNAC	2 cut(s)	86, 220
MalI	GATC	3 cut(s)	500, 535, 696
MboI	GATC	3 cut(s)	498, 533, 694
MboII	GAAGA	3 cut(s)	203, 460, 504
MfeI	CAATTG	1 cut(s)	543
MhlI	GDGCHC	2 cut(s)	189, 287
MluCI	AATT	4 cut(s)	295, 543, 611, 628
MlyI	GAGTC	3 cut(s)	46, 94, 239
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	8 cut(s)	135, 246, 256, 409, 482, 513, 588, 706
Mph1103I	ATGCAT	1 cut(s)	322
MspA1I	CMGCKG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	431
MunI	CAATTG	1 cut(s)	543
Mva1269I	GAATGC	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	2 cut(s)	291, 681
NdeII	GATC	3 cut(s)	498, 533, 694
NlaIII	CATG	1 cut(s)	324
NlaIV	GGNNCC	2 cut(s)	441, 600
NmuCI	GTSAC	1 cut(s)	86
NsiI	ATGCAT	1 cut(s)	322
PaqCI	CACCTGC	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PctI	GAATGC	1 cut(s)	200
PkrI	GCNGC	3 cut(s)	159, 293, 495
PleI	GAGTC	3 cut(s)	45, 93, 239
PpsI	GAGTC	3 cut(s)	45, 93, 239
PpuMI	RGGWCCY	1 cut(s)	599
Psp5II	RGGWCCY	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	2 cut(s)	441, 600
PspPI	GGNCC	3 cut(s)	65, 599, 726
PspPPI	RGGWCCY	1 cut(s)	599
PstI	CTGCAG	1 cut(s)	498
PvuII	CAGCTG	1 cut(s)	291
RsaI	GTAC	2 cut(s)	236, 761
RsaNI	GTAC	2 cut(s)	235, 760
SatI	GCNGC	3 cut(s)	158, 292, 494
Sau3AI	GATC	3 cut(s)	498, 533, 694
Sau96I	GGNCC	3 cut(s)	65, 599, 726
SchI	GAGTC	3 cut(s)	46, 94, 239
ScrFI	CCNGG	1 cut(s)	431
SduI	GDGCHC	2 cut(s)	189, 287
SetI	ASST	9 cut(s)	31, 119, 159, 243, 271, 293, 405, 445, 555
SfaNI	GCATC	2 cut(s)	307, 535
SfcI	CTRYAG	2 cut(s)	51, 494
SinI	GGWCC	1 cut(s)	599
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	4 cut(s)	295, 543, 611, 628
SsiI	CCGC	1 cut(s)	673
StyD4I	CCNGG	1 cut(s)	429
StyI	CCWWGG	1 cut(s)	722
TaaI	ACNGT	2 cut(s)	358, 654
TaqI	TCGA	4 cut(s)	153, 330, 336, 558
TasI	AATT	4 cut(s)	295, 543, 611, 628
TatI	WGTACW	2 cut(s)	234, 759
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	3 cut(s)	157, 291, 493
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	3 cut(s)	161, 494, 624
VpaK11BI	GGWCC	1 cut(s)	599
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.