Rw4G004550

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0002586
Physical Location & Seq
Reverse (-)
9063065 .. 9068004
4940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G004550.1

Sequence Viewer

Length: 756 bp
ATGGGCGGAAATCTATGCCTCTTCTTCTGTTGTTTGAGTTTCTTTGTTACTCTAACAGTAGCAGAGTCAGAGTGGAACATTTTGAATCAGAGAACCAGGAATGGGATGAAGATCAGCTTGAAGACTTACTGTGAGAGCTGGAGGATGAATGTTGAGCTGCACAACATTAGAGAGTTCCAAGTGGTGCCTGAAGAGTGCATAGGATACGTTGGAAAATATGTTACTTCGACTCAGTACAAGGTGGACTCAGAAAGGGCTATTGAGGAGTCCATTGTGTATCTAAGCACTAATGATGGTAGAGATGCATGGATTTTTGACATTGATGATACACTGCTCTCTACTGTGCCTTACTACAAGGGACATCATTTCGGGGGTGAGAAGTTGAACCTGTGTGCTTTGGAGGAGTGGATGAGCCATGGCAAGGCACCTGCTCTGGATCACTCACTCACTATCATTCTGGTTTCTTCAAGGAGGGAGCGTCATAGATCAGCCACAATAAACAACCTTCTCCATGTTGGCTTTTATGGATGGACAAGTCTCATTTTAGAAGGTCAAATCTTGTGCTTGATTTGCTTTTGGGTTCCTGAGGATGAAGTCAAGGGGGTGCAAGATTTCAAAGCTGATGTGAGGAAACAATTGATGGTTGGTGGATACAGAGTTTGGGGCATATTGGGAGATCAATATAGCAGCATTGAGGGACTTCCAAGAGCCACAAGGACATTCAAACTTCCAAACCCATTGTACTATGTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

251

Amino Acids

28.81

Weight (kDa)

5.99

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 38 - 250 7.6e-52 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 436
Acc36I ACCTGC 1 cut(s) 436
AccB1I GGYRCC 2 cut(s) 184, 424
AciI CCGC 1 cut(s) 6
AclWI GGATC 1 cut(s) 444
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 2 cut(s) 236, 743
AfiI CCNNNNNNNGG 2 cut(s) 102, 421
AgsI TTSAA 6 cut(s) 85, 121, 385, 468, 616, 724
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 4 cut(s) 117, 138, 157, 620
AluI AGCT 4 cut(s) 117, 138, 157, 620
Alw26I GTCTC 1 cut(s) 542
AlwI GGATC 1 cut(s) 444
ApeKI GCWGC 2 cut(s) 157, 687
AsuHPI GGTGA 1 cut(s) 386
AxyI CCTNAGG 1 cut(s) 585
BanI GGYRCC 2 cut(s) 184, 424
BbsI GAAGAC 1 cut(s) 128
BbvI GCAGC 2 cut(s) 144, 699
BccI CCATC 3 cut(s) 287, 522, 634
BciT130I CCWGG 1 cut(s) 97
BciVI GTATCC 2 cut(s) 197, 644
BcoDI GTCTC 1 cut(s) 542
BfuAI ACCTGC 1 cut(s) 436
BfuI GTATCC 2 cut(s) 197, 644
BisI GCNGC 2 cut(s) 158, 688
BlsI GCNGC 2 cut(s) 159, 689
Bme1390I CCNGG 1 cut(s) 97
BmiI GGNNCC 3 cut(s) 186, 426, 582
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 160
BsaBI GATNNNNATC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 415
BsaXI ACNNNNNCTCC 2 cut(s) 463, 493
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 421
Bse21I CCTNAGG 1 cut(s) 585
Bse8I GATNNNNATC 1 cut(s) 110
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 415
BseGI GGATG 5 cut(s) 111, 150, 414, 533, 595
BseJI GATNNNNATC 1 cut(s) 110
BseLI CCNNNNNNNGG 2 cut(s) 102, 421
BseMII CTCAG 3 cut(s) 245, 261, 576
BseRI GAGGAG 2 cut(s) 278, 416
BseXI GCAGC 2 cut(s) 144, 699
BsgI GTGCAG 1 cut(s) 143
BshNI GGYRCC 2 cut(s) 184, 424
BslFI GGGAC 2 cut(s) 372, 711
BslI CCNNNNNNNGG 2 cut(s) 102, 421
BsmAI GTCTC 1 cut(s) 542
BsmFI GGGAC 2 cut(s) 372, 711
Bsp143I GATC 4 cut(s) 111, 436, 485, 676
Bsp19I CCATGG 1 cut(s) 415
BspACI CCGC 1 cut(s) 6
BspCNI CTCAG 3 cut(s) 244, 260, 577
BspLI GGNNCC 3 cut(s) 186, 426, 582
BspMI ACCTGC 1 cut(s) 436
BspPI GGATC 1 cut(s) 444
BspT107I GGYRCC 2 cut(s) 184, 424
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 4 cut(s) 111, 436, 485, 676
BssT1I CCWWGG 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 3 cut(s) 58, 131, 343
Bst6I CTCTTC 2 cut(s) 26, 186
BstDEI CTNAG 4 cut(s) 231, 247, 281, 585
BstDSI CCRYGG 1 cut(s) 415
BstF5I GGATG 5 cut(s) 111, 150, 414, 533, 595
BstKTI GATC 4 cut(s) 114, 439, 488, 679
BstMAI GTCTC 1 cut(s) 542
BstMBI GATC 4 cut(s) 111, 436, 485, 676
BstMWI GCNNNNNNNGC 1 cut(s) 570
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 95
BstV1I GCAGC 2 cut(s) 144, 699
BstV2I GAAGAC 1 cut(s) 128
Bsu36I CCTNAGG 1 cut(s) 585
BsuI GTATCC 2 cut(s) 197, 644
BtgI CCRYGG 1 cut(s) 415
BtsCI GGATG 5 cut(s) 111, 150, 414, 533, 595
BtsI GCAGTG 1 cut(s) 329
BtsIMutI CAGTG 1 cut(s) 329
BveI ACCTGC 1 cut(s) 436
CseI GACGC 1 cut(s) 467
Csp6I GTAC 2 cut(s) 235, 742
CviAII CATG 3 cut(s) 306, 416, 512
CviJI RGCY 9 cut(s) 117, 138, 157, 257, 414, 491, 519, 620, 710
CviKI_1 RGCY 9 cut(s) 117, 138, 157, 257, 414, 491, 519, 620, 710
CviQI GTAC 2 cut(s) 235, 742
DdeI CTNAG 4 cut(s) 231, 247, 281, 585
DpnI GATC 4 cut(s) 113, 438, 487, 678
DpnII GATC 4 cut(s) 111, 436, 485, 676
Eam1104I CTCTTC 2 cut(s) 26, 186
EarI CTCTTC 2 cut(s) 26, 186
EciI GGCGGA 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 210
Eco81I CCTNAGG 1 cut(s) 585
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 415
EcoT22I ATGCAT 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 3 cut(s) 309, 419, 515
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 2 cut(s) 372, 711
FatI CATG 3 cut(s) 305, 415, 511
Fnu4HI GCNGC 2 cut(s) 158, 688
FokI GGATG 5 cut(s) 118, 157, 421, 540, 602
Fsp4HI GCNGC 2 cut(s) 158, 688
GluI GCNGC 2 cut(s) 158, 688
GsuI CTGGAG 1 cut(s) 160
HgaI GACGC 1 cut(s) 467
Hin1II CATG 3 cut(s) 309, 419, 515
HinfI GANTC 5 cut(s) 65, 85, 229, 245, 266
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 3 cut(s) 70, 90, 250
Hpy188III TCNNGA 3 cut(s) 434, 584, 753
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 2 cut(s) 515, 542
HpyCH4III ACNGT 3 cut(s) 58, 131, 343
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 4 cut(s) 160, 198, 305, 607
HpyF10VI GCNNNNNNNGC 1 cut(s) 570
HpyF3I CTNAG 4 cut(s) 231, 247, 281, 585
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 3 cut(s) 309, 419, 515
Kzo9I GATC 4 cut(s) 111, 436, 485, 676
LmnI GCTCC 1 cut(s) 475
LpnPI CCDG 9 cut(s) 82, 109, 124, 201, 401, 419, 441, 443, 597
Lsp1109I GCAGC 2 cut(s) 144, 699
LweI GCATC 1 cut(s) 292
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 2 cut(s) 46, 220
MalI GATC 4 cut(s) 113, 438, 487, 678
MboI GATC 4 cut(s) 111, 436, 485, 676
MboII GAAGA 6 cut(s) 13, 16, 121, 133, 203, 456
MfeI CAATTG 1 cut(s) 635
MluCI AATT 1 cut(s) 635
MlyI GAGTC 4 cut(s) 74, 223, 239, 275
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 8 cut(s) 29, 135, 256, 394, 465, 580, 621, 688
Mph1103I ATGCAT 1 cut(s) 307
MspR9I CCNGG 1 cut(s) 97
MunI CAATTG 1 cut(s) 635
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 570
NcoI CCATGG 1 cut(s) 415
NdeII GATC 4 cut(s) 111, 436, 485, 676
NlaIII CATG 3 cut(s) 309, 419, 515
NlaIV GGNNCC 3 cut(s) 186, 426, 582
NsiI ATGCAT 1 cut(s) 307
PaqCI CACCTGC 1 cut(s) 436
PfeI GAWTC 1 cut(s) 85
PkrI GCNGC 2 cut(s) 159, 689
PleI GAGTC 4 cut(s) 73, 223, 239, 274
PpsI GAGTC 4 cut(s) 73, 223, 239, 274
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 3 cut(s) 186, 426, 582
RsaI GTAC 2 cut(s) 236, 743
RsaNI GTAC 2 cut(s) 235, 742
SatI GCNGC 2 cut(s) 158, 688
Sau3AI GATC 4 cut(s) 111, 436, 485, 676
SchI GAGTC 4 cut(s) 74, 223, 239, 275
ScrFI CCNGG 1 cut(s) 97
SfaNI GCATC 1 cut(s) 292
Sse9I AATT 1 cut(s) 635
SsiI CCGC 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 3 cut(s) 58, 131, 343
TaiI ACGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 227
TasI AATT 1 cut(s) 635
TatI WGTACW 2 cut(s) 234, 741
TfiI GAWTC 1 cut(s) 85
TscAI CASTG 1 cut(s) 336
TseI GCWGC 2 cut(s) 157, 687
TspDTI ATGAA 3 cut(s) 122, 161, 606
TspRI CASTG 1 cut(s) 336
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.