Rh4CG061600

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002586
Physical Location & Seq
Reverse (-)
11670572 .. 11670953
382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG061600.1

Sequence Viewer

Length: 273 bp
ATGAATGTTGAGCTGCACAACATTAGAGAGTTCCAAGTGGTGCCTGAAGAGTGCATAGGATACGTTGGAAAATATGTTACTTCCACTCAGTACAAGGTGGACTCAGAAAGGGCTATTGAGGAGTCCATTGTGTATCTAAGCACTGGCTGTAATTTGAAGAATGATGGTAGAGATGCATGGATTTTTGACATTGATGATACACTGCTCTCTACTGTGCCTTACTACAAGGGACATCATTTCGGATTGTTTGATAAGGGTATGTTTCAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

90

Amino Acids

10.36

Weight (kDa)

4.81

Isoelectric Point (pI)

32.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 1 - 81 1.8e-22 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 1 cut(s) 92
AgsI TTSAA 1 cut(s) 157
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 13
BanI GGYRCC 1 cut(s) 40
BccI CCATC 1 cut(s) 158
BciVI GTATCC 1 cut(s) 53
BfuI GTATCC 1 cut(s) 53
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 42
BmsI GCATC 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 148
BseMII CTCAG 2 cut(s) 101, 117
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 40
BslFI GGGAC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 243
BspCNI CTCAG 2 cut(s) 100, 116
BspLI GGNNCC 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 40
BsrI ACTGG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 42
BstDEI CTNAG 3 cut(s) 87, 103, 137
BsuI GTATCC 1 cut(s) 53
BtsI GCAGTG 1 cut(s) 200
BtsIMutI CAGTG 2 cut(s) 141, 200
Csp6I GTAC 1 cut(s) 91
CviAII CATG 1 cut(s) 177
CviJI RGCY 4 cut(s) 13, 113, 147, 269
CviKI_1 RGCY 4 cut(s) 13, 113, 147, 269
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 3 cut(s) 87, 103, 137
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 66
EcoT22I ATGCAT 1 cut(s) 178
FaeI CATG 1 cut(s) 180
FaiI YATR 4 cut(s) 56, 75, 178, 260
FaqI GGGAC 1 cut(s) 243
FatI CATG 1 cut(s) 176
Fnu4HI GCNGC 1 cut(s) 14
Fsp4HI GCNGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 14
Hin1II CATG 1 cut(s) 180
HinfI GANTC 2 cut(s) 101, 122
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 106, 242
Hpy8I GTNNAC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 3 cut(s) 16, 54, 176
HpyF3I CTNAG 3 cut(s) 87, 103, 137
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 1 cut(s) 180
LpnPI CCDG 3 cut(s) 57, 129, 251
LweI GCATC 1 cut(s) 163
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 76
MboII GAAGA 2 cut(s) 59, 169
MluCI AATT 1 cut(s) 151
MlyI GAGTC 2 cut(s) 95, 131
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 1 cut(s) 112
Mph1103I ATGCAT 1 cut(s) 178
MseI TTAA 1 cut(s) 271
NlaIII CATG 1 cut(s) 180
NlaIV GGNNCC 1 cut(s) 42
NsiI ATGCAT 1 cut(s) 178
PkrI GCNGC 1 cut(s) 15
PleI GAGTC 2 cut(s) 95, 130
PpsI GAGTC 2 cut(s) 95, 130
PspN4I GGNNCC 1 cut(s) 42
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SaqAI TTAA 1 cut(s) 271
SatI GCNGC 1 cut(s) 14
SchI GAGTC 2 cut(s) 95, 131
SetI ASST 3 cut(s) 15, 66, 99
SfaNI GCATC 1 cut(s) 163
SgeI CNNG 6 cut(s) 47, 56, 106, 156, 189, 238
Sse9I AATT 1 cut(s) 151
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 1 cut(s) 66
TasI AATT 1 cut(s) 151
TatI WGTACW 1 cut(s) 90
Tru1I TTAA 1 cut(s) 271
Tru9I TTAA 1 cut(s) 271
TscAI CASTG 2 cut(s) 148, 207
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 148, 207
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.