Rh6CG308700
ERF Family

HAD superfamily, subfamily IIIB (Acid phosphatase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002586
Physical Location & Seq
Forward (+)
49028821 .. 49030012
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG308700.1

Sequence Viewer

Length: 777 bp
ATGGGAAAACTCATAGGATTCCTGCTTTTGATCTCAAGCCTCTTCATTGTGGTTGCAGCAGATTGGAGCATTTTGAACCGTAGAAAGAAGAATACCAATGGGGTAGTGGGAGATGGCTTGAAGAAGTACTGTGAGAGTTGGAGGATCAATGTTGAGGTCAACAACATTAGAGGGTTTGATGTGGTGCCTCAAGAATGTGTTGAGCACATAAAGAAATACATGACATCTTCTCAGTACAAAGCTGACTCAGAGAGGGCCTTGGAGGAAGTCACTCTCTACCTGAGCAGTAGTTGCTGTTGCACTTTGGAGGGTGATGGTAAAGATGCTTGGATTTTTGATGTTGATGATACACTCCTCTCCACTATTCCTTATTTCAAGAAACATGGTTTTGGGGGAGAGAAGCTGAATGCAACATCCTTGGAAACATGGATGAAAGAGAGCAAGGCACCAGCTCTAGAGCACACACTAGAGCTCTTCCATGATATCAAAGACAGAGGATTTAAGATCTTTCTCATCTCTTCAAGAAGGGAGACCCTTAGATCTCCAAGTGTAGATAACCTCATTAAGGTTGGATACCATGGATGGACTAATCTTGTGCTAAGGGGTCTTGAAGATGAATTCATGGAAGTGCAGAAGTACAAGTCTGAGGCAAGGCATCGACTCGTCGATGAAGGTTACCGCATTTGGGGCATAATAGGAGATCAGTGGAGCAGTTTCGAGGGACTTCCCATTGCAAAAAGAACATTCAAACTACCCAATTCAATGTACTATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

258

Amino Acids

29.64

Weight (kDa)

7.01

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 41 - 258 3e-77 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 184, 445
AciI CCGC 1 cut(s) 679
AclWI GGATC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 617
AfaI GTAC 4 cut(s) 128, 236, 638, 767
AfiI CCNNNNNNNGG 2 cut(s) 565, 685
AgsI TTSAA 7 cut(s) 76, 121, 376, 522, 611, 748, 762
AluBI AGCT 4 cut(s) 242, 403, 452, 472
AluI AGCT 4 cut(s) 242, 403, 452, 472
Alw21I GWGCWC 3 cut(s) 207, 462, 474
Alw26I GTCTC 1 cut(s) 524
AlwI GGATC 1 cut(s) 152
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 617
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 1 cut(s) 323
BanI GGYRCC 2 cut(s) 184, 445
BanII GRGCYC 1 cut(s) 474
Bbv12I GWGCWC 3 cut(s) 207, 462, 474
BbvI GCAGC 1 cut(s) 68
BccI CCATC 3 cut(s) 107, 308, 576
BciVI GTATCC 1 cut(s) 566
BcoDI GTCTC 1 cut(s) 524
BfaI CTAG 3 cut(s) 455, 467, 775
BfuI GTATCC 1 cut(s) 566
BglII AGATCT 2 cut(s) 504, 539
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BmcAI AGTACT 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 2 cut(s) 186, 447
BmsI GCATC 2 cut(s) 313, 664
Bpu10I CCTNAGC 2 cut(s) 281, 599
BpuEI CTTGAG 2 cut(s) 19, 174
BsaI GGTCTC 1 cut(s) 524
BsaJI CCNNGG 3 cut(s) 258, 417, 577
Bsc4I CCNNNNNNNGG 2 cut(s) 565, 685
Bse3DI GCAATG 1 cut(s) 729
BseDI CCNNGG 3 cut(s) 258, 417, 577
BseGI GGATG 3 cut(s) 413, 435, 587
BseLI CCNNNNNNNGG 2 cut(s) 565, 685
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 4 cut(s) 245, 261, 272, 636
BseRI GAGGAG 1 cut(s) 344
BseXI GCAGC 1 cut(s) 68
BsgI GTGCAG 1 cut(s) 650
BshFI GGCC 1 cut(s) 257
BshNI GGYRCC 2 cut(s) 184, 445
BsiHKAI GWGCWC 3 cut(s) 207, 462, 474
BslFI GGGAC 1 cut(s) 735
BslI CCNNNNNNNGG 2 cut(s) 565, 685
BsmAI GTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 735
BsmI GAATGC 1 cut(s) 412
BsnI GGCC 1 cut(s) 257
Bso31I GGTCTC 1 cut(s) 524
Bsp1286I GDGCHC 3 cut(s) 207, 462, 474
Bsp143I GATC 5 cut(s) 30, 144, 504, 539, 700
Bsp19I CCATGG 1 cut(s) 577
BspACI CCGC 1 cut(s) 679
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 4 cut(s) 244, 260, 273, 637
BspLI GGNNCC 2 cut(s) 186, 447
BspPI GGATC 1 cut(s) 152
BspQI GCTCTTC 1 cut(s) 479
BspT107I GGYRCC 2 cut(s) 184, 445
BspTNI GGTCTC 1 cut(s) 524
BsrDI GCAATG 1 cut(s) 729
BssECI CCNNGG 3 cut(s) 258, 417, 577
BssMI GATC 5 cut(s) 30, 144, 504, 539, 700
BssT1I CCWWGG 3 cut(s) 258, 417, 577
Bst4CI ACNGT 2 cut(s) 80, 131
Bst6I CTCTTC 3 cut(s) 47, 479, 523
BstAPI GCANNNNNTGC 1 cut(s) 291
BstDEI CTNAG 6 cut(s) 231, 247, 281, 536, 599, 645
BstDSI CCRYGG 1 cut(s) 577
BstEII GGTNACC 1 cut(s) 674
BstENI CCTNNNNNAGG 1 cut(s) 563
BstF5I GGATG 3 cut(s) 413, 435, 587
BstKTI GATC 5 cut(s) 33, 147, 507, 542, 703
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 5 cut(s) 30, 144, 504, 539, 700
BstMWI GCNNNNNNNGC 2 cut(s) 291, 687
BstPI GGTNACC 1 cut(s) 674
BstV1I GCAGC 1 cut(s) 68
BstX2I RGATCY 2 cut(s) 504, 539
BstYI RGATCY 2 cut(s) 504, 539
BsuI GTATCC 1 cut(s) 566
BsuRI GGCC 1 cut(s) 257
BtgI CCRYGG 1 cut(s) 577
BtsCI GGATG 3 cut(s) 413, 435, 587
BtsIMutI CAGTG 1 cut(s) 710
Cfr13I GGNCC 1 cut(s) 255
Csp6I GTAC 4 cut(s) 127, 235, 637, 766
CviAII CATG 6 cut(s) 220, 383, 426, 479, 578, 622
CviJI RGCY 7 cut(s) 39, 117, 242, 257, 403, 452, 472
CviKI_1 RGCY 7 cut(s) 39, 117, 242, 257, 403, 452, 472
CviQI GTAC 4 cut(s) 127, 235, 637, 766
DdeI CTNAG 6 cut(s) 231, 247, 281, 536, 599, 645
DpnI GATC 5 cut(s) 32, 146, 506, 541, 702
DpnII GATC 5 cut(s) 30, 144, 504, 539, 700
Eam1104I CTCTTC 3 cut(s) 47, 479, 523
EarI CTCTTC 3 cut(s) 47, 479, 523
Ecl136II GAGCTC 1 cut(s) 472
Eco130I CCWWGG 3 cut(s) 258, 417, 577
Eco24I GRGCYC 1 cut(s) 474
Eco31I GGTCTC 1 cut(s) 524
Eco32I GATATC 1 cut(s) 484
Eco53kI GAGCTC 1 cut(s) 472
Eco91I GGTNACC 1 cut(s) 674
EcoICRI GAGCTC 1 cut(s) 472
EcoNI CCTNNNNNAGG 1 cut(s) 563
EcoO109I RGGNCCY 1 cut(s) 255
EcoO65I GGTNACC 1 cut(s) 674
EcoRI GAATTC 1 cut(s) 617
EcoRV GATATC 1 cut(s) 484
EcoT14I CCWWGG 3 cut(s) 258, 417, 577
EcoT38I GRGCYC 1 cut(s) 474
ErhI CCWWGG 3 cut(s) 258, 417, 577
FaeI CATG 6 cut(s) 223, 386, 429, 482, 581, 625
FaqI GGGAC 1 cut(s) 735
FatI CATG 6 cut(s) 219, 382, 425, 478, 577, 621
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 3 cut(s) 400, 442, 594
FriOI GRGCYC 1 cut(s) 474
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 3 cut(s) 455, 467, 775
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 1 cut(s) 257
Hin1II CATG 6 cut(s) 223, 386, 429, 482, 581, 625
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 3 cut(s) 18, 245, 660
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 250, 646
Hpy188III TCNNGA 5 cut(s) 191, 376, 455, 522, 608
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 1 cut(s) 668
HpyAV CCTTC 2 cut(s) 519, 665
HpyCH4III ACNGT 2 cut(s) 80, 131
HpyCH4V TGCA 5 cut(s) 56, 300, 410, 631, 734
HpyF10VI GCNNNNNNNGC 2 cut(s) 291, 687
HpyF3I CTNAG 6 cut(s) 231, 247, 281, 536, 599, 645
Hsp92II CATG 6 cut(s) 223, 386, 429, 482, 581, 625
Kzo9I GATC 5 cut(s) 30, 144, 504, 539, 700
LguI GCTCTTC 1 cut(s) 479
LmnI GCTCC 2 cut(s) 66, 708
LpnPI CCDG 3 cut(s) 35, 293, 462
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 2 cut(s) 313, 664
MaeI CTAG 3 cut(s) 455, 467, 775
MaeIII GTNAC 2 cut(s) 268, 674
MalI GATC 5 cut(s) 32, 146, 506, 541, 702
MboI GATC 5 cut(s) 30, 144, 504, 539, 700
MboII GAAGA 7 cut(s) 34, 100, 133, 219, 466, 510, 623
MflI RGATCY 2 cut(s) 504, 539
MhlI GDGCHC 3 cut(s) 207, 462, 474
MluCI AATT 2 cut(s) 617, 757
MlyI GAGTC 2 cut(s) 239, 654
MmeI TCCRAC 2 cut(s) 119, 550
MseI TTAA 2 cut(s) 501, 564
MslI CAYNNNNRTG 1 cut(s) 626
Mva1269I GAATGC 1 cut(s) 412
MwoI GCNNNNNNNGC 2 cut(s) 291, 687
NcoI CCATGG 1 cut(s) 577
NdeII GATC 5 cut(s) 30, 144, 504, 539, 700
NlaIII CATG 6 cut(s) 223, 386, 429, 482, 581, 625
NlaIV GGNNCC 2 cut(s) 186, 447
NmuCI GTSAC 1 cut(s) 268
PciSI GCTCTTC 1 cut(s) 479
PctI GAATGC 1 cut(s) 412
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 2 cut(s) 239, 654
PpsI GAGTC 2 cut(s) 239, 654
Psp124BI GAGCTC 1 cut(s) 474
PspEI GGTNACC 1 cut(s) 674
PspN4I GGNNCC 2 cut(s) 186, 447
PspPI GGNCC 1 cut(s) 255
PsuI RGATCY 2 cut(s) 504, 539
RsaI GTAC 4 cut(s) 128, 236, 638, 767
RsaNI GTAC 4 cut(s) 127, 235, 637, 766
RseI CAYNNNNRTG 1 cut(s) 626
SacI GAGCTC 1 cut(s) 474
SapI GCTCTTC 1 cut(s) 479
SaqAI TTAA 2 cut(s) 501, 564
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 5 cut(s) 30, 144, 504, 539, 700
Sau96I GGNCC 1 cut(s) 255
ScaI AGTACT 1 cut(s) 128
SchI GAGTC 2 cut(s) 239, 654
SduI GDGCHC 3 cut(s) 207, 462, 474
SetI ASST 9 cut(s) 159, 244, 282, 405, 454, 474, 561, 570, 676
SfaNI GCATC 2 cut(s) 313, 664
SmiMI CAYNNNNRTG 1 cut(s) 626
SmlI CTYRAG 2 cut(s) 34, 189
SmoI CTYRAG 2 cut(s) 34, 189
Sse9I AATT 2 cut(s) 617, 757
SsiI CCGC 1 cut(s) 679
SspMI CTAG 3 cut(s) 455, 467, 775
SstI GAGCTC 1 cut(s) 474
StyI CCWWGG 3 cut(s) 258, 417, 577
TaaI ACNGT 2 cut(s) 80, 131
TaqI TCGA 3 cut(s) 658, 666, 717
TasI AATT 2 cut(s) 617, 757
TatI WGTACW 4 cut(s) 126, 234, 636, 765
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 2 cut(s) 501, 564
Tru9I TTAA 2 cut(s) 501, 564
TscAI CASTG 1 cut(s) 710
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 5 cut(s) 34, 446, 610, 630, 684
TspRI CASTG 1 cut(s) 710
XagI CCTNNNNNAGG 1 cut(s) 563
XapI RAATTY 1 cut(s) 617
XbaI TCTAGA 1 cut(s) 454
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XspI CTAG 3 cut(s) 455, 467, 775
ZrmI AGTACT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.