RchiOBHm_Chr4g0395031

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002586
Physical Location & Seq
Reverse (-)
10808709 .. 10809932
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36750

Sequence Viewer

Length: 369 bp
ATGAAGATCAGCTTGAAGACTTACTGTGAGAGCTGGAGGAAGAATGTTGAGCTGCACAACATTAGAGAGTTCCAAGTGGTGCCTGAAGAGTGCATAGGATACGTTGGAAAATATGTTACTTCGACTCAGTACAAGGTGGACTCAGAAAGGGCTATTGAGGAGTCCATTGTGTATCTAAGCAGTGGCTGTAATTTGAAGAATGATGGTAGAGATGCATGGATTTTTGACATTGATGATACACTGCTCTCTACTGTGCCTTACTACAAGGGACATCATTTCGGGGGTGAGAAGTTGAACCTGAGTGCTTTGGAGGAGTGGATGAGCCATGGCAAGGCACCTGCTCTGGATCACTCACTCACTGTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

122

Amino Acids

13.97

Weight (kDa)

5.47

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 5 - 120 9.5e-33 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 346
Acc36I ACCTGC 1 cut(s) 346
AccB1I GGYRCC 2 cut(s) 79, 334
AclWI GGATC 1 cut(s) 354
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 4 cut(s) 16, 196, 295, 365
AluBI AGCT 3 cut(s) 12, 33, 52
AluI AGCT 3 cut(s) 12, 33, 52
AlwI GGATC 1 cut(s) 354
AlwNI CAGNNNCTG 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 296
BanI GGYRCC 2 cut(s) 79, 334
BbsI GAAGAC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 39
BccI CCATC 1 cut(s) 197
BciVI GTATCC 1 cut(s) 92
BfuAI ACCTGC 1 cut(s) 346
BfuI GTATCC 1 cut(s) 92
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BmiI GGNNCC 2 cut(s) 81, 336
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 23
BpmI CTGGAG 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 325
Bsc4I CCNNNNNNNGG 1 cut(s) 331
BseDI CCNNGG 1 cut(s) 325
BseGI GGATG 1 cut(s) 324
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMII CTCAG 3 cut(s) 140, 156, 290
BseRI GAGGAG 2 cut(s) 173, 326
BseXI GCAGC 1 cut(s) 39
BsgI GTGCAG 1 cut(s) 38
BshNI GGYRCC 2 cut(s) 79, 334
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 282
Bsp143I GATC 2 cut(s) 6, 346
Bsp19I CCATGG 1 cut(s) 325
BspCNI CTCAG 3 cut(s) 139, 155, 291
BspLI GGNNCC 2 cut(s) 81, 336
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 1 cut(s) 354
BspT107I GGYRCC 2 cut(s) 79, 334
BssECI CCNNGG 1 cut(s) 325
BssMI GATC 2 cut(s) 6, 346
BssT1I CCWWGG 1 cut(s) 325
Bst4CI ACNGT 3 cut(s) 26, 253, 361
Bst6I CTCTTC 1 cut(s) 81
BstDEI CTNAG 4 cut(s) 126, 142, 176, 299
BstDSI CCRYGG 1 cut(s) 325
BstF5I GGATG 1 cut(s) 324
BstKTI GATC 2 cut(s) 9, 349
BstMBI GATC 2 cut(s) 6, 346
BstV1I GCAGC 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 23
BsuI GTATCC 1 cut(s) 92
BtgI CCRYGG 1 cut(s) 325
BtsCI GGATG 1 cut(s) 324
BtsI GCAGTG 2 cut(s) 187, 239
BtsIMutI CAGTG 3 cut(s) 187, 239, 357
BveI ACCTGC 1 cut(s) 346
CaiI CAGNNNCTG 1 cut(s) 186
Csp6I GTAC 1 cut(s) 130
CviAII CATG 2 cut(s) 216, 326
CviJI RGCY 6 cut(s) 12, 33, 52, 152, 186, 324
CviKI_1 RGCY 6 cut(s) 12, 33, 52, 152, 186, 324
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 4 cut(s) 126, 142, 176, 299
DpnI GATC 2 cut(s) 8, 348
DpnII GATC 2 cut(s) 6, 346
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 325
Eco57I CTGAAG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 325
EcoT22I ATGCAT 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 325
FaeI CATG 2 cut(s) 219, 329
FaiI YATR 4 cut(s) 95, 114, 217, 327
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 1 cut(s) 282
FatI CATG 2 cut(s) 215, 325
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 1 cut(s) 331
Fsp4HI GCNGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 55
Hin1II CATG 2 cut(s) 219, 329
HinfI GANTC 3 cut(s) 124, 140, 161
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 344
Hpy8I GTNNAC 1 cut(s) 139
HpyCH4III ACNGT 3 cut(s) 26, 253, 361
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 3 cut(s) 55, 93, 215
HpyF3I CTNAG 4 cut(s) 126, 142, 176, 299
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 2 cut(s) 219, 329
Kzo9I GATC 2 cut(s) 6, 346
LpnPI CCDG 5 cut(s) 19, 96, 311, 329, 351
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 1 cut(s) 202
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 115
MalI GATC 2 cut(s) 8, 348
MboI GATC 2 cut(s) 6, 346
MboII GAAGA 5 cut(s) 16, 28, 52, 98, 208
MluCI AATT 1 cut(s) 190
MlyI GAGTC 3 cut(s) 118, 134, 170
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 3 cut(s) 30, 151, 304
Mph1103I ATGCAT 1 cut(s) 217
NcoI CCATGG 1 cut(s) 325
NdeII GATC 2 cut(s) 6, 346
NlaIII CATG 2 cut(s) 219, 329
NlaIV GGNNCC 2 cut(s) 81, 336
NsiI ATGCAT 1 cut(s) 217
PaqCI CACCTGC 1 cut(s) 346
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 3 cut(s) 118, 134, 169
PpsI GAGTC 3 cut(s) 118, 134, 169
PspN4I GGNNCC 2 cut(s) 81, 336
PstNI CAGNNNCTG 1 cut(s) 186
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 2 cut(s) 6, 346
SchI GAGTC 3 cut(s) 118, 134, 170
SetI ASST 7 cut(s) 14, 35, 54, 105, 138, 300, 340
SfaNI GCATC 1 cut(s) 202
Sse9I AATT 1 cut(s) 190
StyI CCWWGG 1 cut(s) 325
TaaI ACNGT 3 cut(s) 26, 253, 361
TaiI ACGT 1 cut(s) 105
TaqI TCGA 1 cut(s) 122
TasI AATT 1 cut(s) 190
TatI WGTACW 1 cut(s) 129
TscAI CASTG 3 cut(s) 187, 246, 364
TseI GCWGC 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 3 cut(s) 187, 246, 364
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.