Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002520.1

Orthogroup ID

OG0002586

Physical Location & Seq

Genomic Coordinates Forward (+)

38248 .. 39335

Gene Structure 1088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002520.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggccggcttgaagaagtactgtgagagttggaggatcaatgttgaggtcaacaacattagagggtttgatgtggtgcctcaagaatgtgttgagcacataaagaaatacatgacatcttctcagtacaaagctgactcagagagggccttggaggaagtcactctctacctgagcagtagttgctgttgcactttggtgggtgatggtaaagatgcttggatttttgatgttgatgatacactcctctccactattccttatttcaagaaacatggttttgggggagagaagctgaatgcaacatccttggaaacatggatgaaagagagcaaggcaccagctctagagcacacattaaagctcttccatgatatcaaagacagaggatttaagatctttctcatctcttcaagaagggagacccttagaactccaagtgtagataacctcattaaggttggataccatggatggactaatcttgtgctaaggggtcttgaagatgaattcatggaagtgcagaagtacaagtctgaggcaaggcatcgactcgtcgatgaaggttaccgcatttggggcataataggagatcagtggagcagtttcgagggacttcccattgcgaaaagaacattcaaactacccaattcaatgtactatgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

222

Amino Acids

25.68

Weight (kDa)

7.0

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04040 AT5G44020
fragaria_vesca	FvH4_2g20720
malus_domestica	MD00G1060800.v1.1
prunus_persica	Prupe.1G046900_v2.0.a1 Prupe.8G216700_v2.0.a1
pyrus_communis	pycom05g17430 pycom10g15320 pycom16g18830
rosa_chinensis	RchiOBHm_Chr4g0395031 RchiOBHm_Chr4g0395081 RchiOBHm_Chr4g0395141 RchiOBHm_Chr6g0286901
rosa_laevigata	RLG00000012528
rosa_multiflora	Rmu_sc0000734.1_g000001 Rmu_sc0001827.1_g000003 Rmu_sc0002520.1_g000008 Rmu_sc0007570.1_g000003 Rmu_sc0008415.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340010 Rroxscaffold_5G00340020 Rroxscaffold_5G00340080 Rroxscaffold_7G00181820
rosa_rugosa	Rorug03G0359700.1 Rorug06G0184700
rosa_samantha	Rh4AG056700 Rh4BG055400 Rh4BG055600 Rh4CG061500 Rh4CG061600 Rh4CG061800 Rh6AG296600 Rh6BG301200 Rh6CG308600 Rh6CG308700 Rh6DG292400 Rh6DG292500
rosa_wichuraiana	Rw4G004550 Rw4G004570 Rw6G025590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	76, 337
AciI	CCGC	1 cut(s)	571
AclWI	GGATC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	509
AfaI	GTAC	4 cut(s)	20, 128, 530, 659
AfiI	CCNNNNNNNGG	2 cut(s)	457, 577
AgsI	TTSAA	6 cut(s)	13, 268, 414, 503, 640, 654
AleI	CACNNNNGTG	1 cut(s)	197
AluBI	AGCT	4 cut(s)	134, 295, 344, 364
AluI	AGCT	4 cut(s)	134, 295, 344, 364
Alw21I	GWGCWC	2 cut(s)	99, 354
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	1 cut(s)	44
AoxI	GGCC	2 cut(s)	3, 147
ApoI	RAATTY	1 cut(s)	509
AspS9I	GGNCC	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	215
BanI	GGYRCC	2 cut(s)	76, 337
Bbv12I	GWGCWC	2 cut(s)	99, 354
BccI	CCATC	2 cut(s)	200, 468
BciVI	GTATCC	1 cut(s)	458
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	2 cut(s)	347, 667
BfuI	GTATCC	1 cut(s)	458
BglII	AGATCT	1 cut(s)	396
BmcAI	AGTACT	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	2 cut(s)	78, 339
BmsI	GCATC	2 cut(s)	205, 556
Bpu10I	CCTNAGC	2 cut(s)	173, 491
BpuEI	CTTGAG	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	3 cut(s)	150, 309, 469
Bsc4I	CCNNNNNNNGG	2 cut(s)	457, 577
Bse118I	RCCGGY	1 cut(s)	5
Bse3DI	GCAATG	1 cut(s)	621
BseDI	CCNNGG	3 cut(s)	150, 309, 469
BseGI	GGATG	3 cut(s)	305, 327, 479
BseLI	CCNNNNNNNGG	2 cut(s)	457, 577
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	4 cut(s)	137, 153, 164, 528
BseRI	GAGGAG	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	542
BshFI	GGCC	2 cut(s)	5, 149
BshNI	GGYRCC	2 cut(s)	76, 337
BsiHKAI	GWGCWC	2 cut(s)	99, 354
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	627
BslI	CCNNNNNNNGG	2 cut(s)	457, 577
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	627
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	5, 149
Bso31I	GGTCTC	1 cut(s)	416
Bsp1286I	GDGCHC	2 cut(s)	99, 354
Bsp143I	GATC	3 cut(s)	36, 396, 592
Bsp19I	CCATGG	1 cut(s)	469
BspACI	CCGC	1 cut(s)	571
BspANI	GGCC	2 cut(s)	5, 149
BspCNI	CTCAG	4 cut(s)	136, 152, 165, 529
BspLI	GGNNCC	2 cut(s)	78, 339
BspPI	GGATC	1 cut(s)	44
BspQI	GCTCTTC	1 cut(s)	371
BspT107I	GGYRCC	2 cut(s)	76, 337
BspTNI	GGTCTC	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	621
BsrFI	RCCGGY	1 cut(s)	5
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	3 cut(s)	150, 309, 469
BssMI	GATC	3 cut(s)	36, 396, 592
BssT1I	CCWWGG	3 cut(s)	150, 309, 469
Bst4CI	ACNGT	1 cut(s)	23
Bst6I	CTCTTC	2 cut(s)	371, 415
BstAPI	GCANNNNNTGC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	6 cut(s)	123, 139, 173, 428, 491, 537
BstDSI	CCRYGG	1 cut(s)	469
BstEII	GGTNACC	1 cut(s)	566
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstF5I	GGATG	3 cut(s)	305, 327, 479
BstKTI	GATC	3 cut(s)	39, 399, 595
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	3 cut(s)	36, 396, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 579
BstPI	GGTNACC	1 cut(s)	566
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
BsuI	GTATCC	1 cut(s)	458
BsuRI	GGCC	2 cut(s)	5, 149
BtgI	CCRYGG	1 cut(s)	469
BtsCI	GGATG	3 cut(s)	305, 327, 479
BtsIMutI	CAGTG	1 cut(s)	602
Cac8I	GCNNGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	147
Csp6I	GTAC	4 cut(s)	19, 127, 529, 658
CviAII	CATG	6 cut(s)	112, 275, 318, 371, 470, 514
CviJI	RGCY	7 cut(s)	5, 9, 134, 149, 295, 344, 364
CviKI_1	RGCY	7 cut(s)	5, 9, 134, 149, 295, 344, 364
CviQI	GTAC	4 cut(s)	19, 127, 529, 658
DdeI	CTNAG	6 cut(s)	123, 139, 173, 428, 491, 537
DpnI	GATC	3 cut(s)	38, 398, 594
DpnII	GATC	3 cut(s)	36, 396, 592
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	371, 415
EarI	CTCTTC	2 cut(s)	371, 415
Eco130I	CCWWGG	3 cut(s)	150, 309, 469
Eco31I	GGTCTC	1 cut(s)	416
Eco32I	GATATC	1 cut(s)	376
Eco91I	GGTNACC	1 cut(s)	566
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	147
EcoO65I	GGTNACC	1 cut(s)	566
EcoRI	GAATTC	1 cut(s)	509
EcoRV	GATATC	1 cut(s)	376
EcoT14I	CCWWGG	3 cut(s)	150, 309, 469
ErhI	CCWWGG	3 cut(s)	150, 309, 469
FaeI	CATG	6 cut(s)	115, 278, 321, 374, 473, 517
FaiI	YATR	9 cut(s)	101, 113, 276, 319, 372, 471, 515, 584, 663
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	6 cut(s)	111, 274, 317, 370, 469, 513
FokI	GGATG	3 cut(s)	292, 334, 486
FspBI	CTAG	2 cut(s)	347, 667
HaeIII	GGCC	2 cut(s)	5, 149
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	6 cut(s)	115, 278, 321, 374, 473, 517
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	2 cut(s)	137, 552
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	2 cut(s)	142, 538
Hpy188III	TCNNGA	5 cut(s)	83, 268, 347, 414, 500
Hpy8I	GTNNAC	1 cut(s)	52
Hpy99I	CGWCG	1 cut(s)	560
HpyAV	CCTTC	2 cut(s)	411, 557
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4V	TGCA	3 cut(s)	192, 302, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 579
HpyF3I	CTNAG	6 cut(s)	123, 139, 173, 428, 491, 537
Hsp92II	CATG	6 cut(s)	115, 278, 321, 374, 473, 517
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	36, 396, 592
LguI	GCTCTTC	1 cut(s)	371
LmnI	GCTCC	1 cut(s)	600
LpnPI	CCDG	3 cut(s)	19, 185, 354
LweI	GCATC	2 cut(s)	205, 556
MaeI	CTAG	2 cut(s)	347, 667
MaeIII	GTNAC	2 cut(s)	160, 566
MalI	GATC	3 cut(s)	38, 398, 594
MboI	GATC	3 cut(s)	36, 396, 592
MboII	GAAGA	5 cut(s)	25, 111, 358, 402, 515
MflI	RGATCY	1 cut(s)	396
MhlI	GDGCHC	2 cut(s)	99, 354
MluCI	AATT	2 cut(s)	509, 649
MlyI	GAGTC	2 cut(s)	131, 546
MmeI	TCCRAC	2 cut(s)	11, 442
MroNI	GCCGGC	1 cut(s)	5
MseI	TTAA	3 cut(s)	359, 393, 456
MslI	CAYNNNNRTG	2 cut(s)	197, 518
MspI	CCGG	1 cut(s)	6
Mva1269I	GAATGC	1 cut(s)	304
MwoI	GCNNNNNNNGC	2 cut(s)	183, 579
NaeI	GCCGGC	1 cut(s)	7
NcoI	CCATGG	1 cut(s)	469
NdeII	GATC	3 cut(s)	36, 396, 592
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	6 cut(s)	115, 278, 321, 374, 473, 517
NlaIV	GGNNCC	2 cut(s)	78, 339
NmuCI	GTSAC	1 cut(s)	160
OliI	CACNNNNGTG	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	371
PctI	GAATGC	1 cut(s)	304
PdiI	GCCGGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	131, 546
PpsI	GAGTC	2 cut(s)	131, 546
PspEI	GGTNACC	1 cut(s)	566
PspN4I	GGNNCC	2 cut(s)	78, 339
PspPI	GGNCC	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	396
RsaI	GTAC	4 cut(s)	20, 128, 530, 659
RsaNI	GTAC	4 cut(s)	19, 127, 529, 658
RseI	CAYNNNNRTG	2 cut(s)	197, 518
SapI	GCTCTTC	1 cut(s)	371
SaqAI	TTAA	3 cut(s)	359, 393, 456
Sau3AI	GATC	3 cut(s)	36, 396, 592
Sau96I	GGNCC	1 cut(s)	147
ScaI	AGTACT	1 cut(s)	20
SchI	GAGTC	2 cut(s)	131, 546
SduI	GDGCHC	2 cut(s)	99, 354
SetI	ASST	9 cut(s)	51, 136, 174, 297, 346, 366, 453, 462, 568
SfaNI	GCATC	2 cut(s)	205, 556
SmiMI	CAYNNNNRTG	2 cut(s)	197, 518
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	2 cut(s)	509, 649
SsiI	CCGC	1 cut(s)	571
SspMI	CTAG	2 cut(s)	347, 667
StyI	CCWWGG	3 cut(s)	150, 309, 469
TaaI	ACNGT	1 cut(s)	23
TaqI	TCGA	3 cut(s)	550, 558, 609
TasI	AATT	2 cut(s)	509, 649
TatI	WGTACW	4 cut(s)	18, 126, 528, 657
Tru1I	TTAA	3 cut(s)	359, 393, 456
Tru9I	TTAA	3 cut(s)	359, 393, 456
TscAI	CASTG	1 cut(s)	602
TseFI	GTSAC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	4 cut(s)	338, 502, 522, 576
TspRI	CASTG	1 cut(s)	602
XagI	CCTNNNNNAGG	1 cut(s)	455
XapI	RAATTY	1 cut(s)	509
XbaI	TCTAGA	1 cut(s)	346
XspI	CTAG	2 cut(s)	347, 667
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.