Rroxscaffold_5G00340080

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002586
Physical Location & Seq
Reverse (-)
8436381 .. 8436817
437 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00340080.1

Sequence Viewer

Length: 255 bp
ATGTTGAGCTGCACAACATTAGAGAGTTCCAAGTGGTGCCTTGGAAAATATGTTACTTCGACTCAGTGCAAAGTGGACTCAGACAGGGCTATTGAGGAGTCCATTGTGTATCTAAGAGCTAGCTGTAATTTGAAGAATGATGGTAGAGGTGCGTGGATTTTTGACATTGATGATACACTGCTCTCTATTGTGCCTTACTACAAGGGACATCATTTCGGGGGTGAGAAGTTGAACCTGAGTGCTTTGGAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

84

Amino Acids

9.44

Weight (kDa)

5.27

Isoelectric Point (pI)

35.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 14 - 78 5.7e-14 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 36
AgsI TTSAA 2 cut(s) 133, 232
AluBI AGCT 3 cut(s) 9, 119, 123
AluI AGCT 3 cut(s) 9, 119, 123
ApeKI GCWGC 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 233
AsuNHI GCTAGC 1 cut(s) 119
BanI GGYRCC 1 cut(s) 36
BccI CCATC 1 cut(s) 134
BfaI CTAG 1 cut(s) 120
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 38
BmtI GCTAGC 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 40
BseMII CTCAG 3 cut(s) 77, 93, 227
BseRI GAGGAG 1 cut(s) 110
BshNI GGYRCC 1 cut(s) 36
BslFI GGGAC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 219
BspCNI CTCAG 3 cut(s) 76, 92, 228
BspLI GGNNCC 1 cut(s) 38
BspOI GCTAGC 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 4 cut(s) 63, 79, 113, 236
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 2 cut(s) 71, 176
Cac8I GCNNGC 1 cut(s) 121
CviJI RGCY 4 cut(s) 9, 89, 119, 123
CviKI_1 RGCY 4 cut(s) 9, 89, 119, 123
DdeI CTNAG 4 cut(s) 63, 79, 113, 236
Eco130I CCWWGG 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
FaiI YATR 1 cut(s) 51
FaqI GGGAC 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 10
FspBI CTAG 1 cut(s) 120
GluI GCNGC 1 cut(s) 10
HinfI GANTC 3 cut(s) 61, 77, 98
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 12, 69
HpyF3I CTNAG 4 cut(s) 63, 79, 113, 236
LpnPI CCDG 2 cut(s) 70, 248
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 52
MboII GAAGA 1 cut(s) 145
MluCI AATT 1 cut(s) 127
MlyI GAGTC 3 cut(s) 55, 71, 107
MnlI CCTC 3 cut(s) 88, 140, 241
NheI GCTAGC 1 cut(s) 119
NlaIV GGNNCC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 11
PleI GAGTC 3 cut(s) 55, 71, 106
PpsI GAGTC 3 cut(s) 55, 71, 106
PspN4I GGNNCC 1 cut(s) 38
SatI GCNGC 1 cut(s) 10
SchI GAGTC 3 cut(s) 55, 71, 107
SetI ASST 5 cut(s) 11, 121, 125, 151, 237
SgeI CNNG 8 cut(s) 43, 53, 97, 132, 165, 214, 229, 247
Sse9I AATT 1 cut(s) 127
SspMI CTAG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 40
TaqI TCGA 1 cut(s) 59
TasI AATT 1 cut(s) 127
TscAI CASTG 2 cut(s) 71, 183
TseI GCWGC 1 cut(s) 9
TspRI CASTG 2 cut(s) 71, 183
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.