Rh4BG055400

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002586
Physical Location & Seq
Reverse (-)
9902043 .. 9902429
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG055400.1

Sequence Viewer

Length: 387 bp
ATGGCAAGGCACCTGCTCTGGATCACTCACTCACTGTTCAATGAGATCAAAGCCAGAGGGCTGCAGATCATTCTGGTTTCTTCAAGGAGGGAGCTTAGATCAGCCACAATAAACAACCTTCTCCATGTTGGCTTTTATGGATGGACAAGTCTCATTTTAAGGTCAGTTCTTCTCTCGCTCAATCACATAATATATAGAGAGGGGTACAGGGGTCCTGAGGATGAAGTGAAGGGGATGCAAGATTTCAAAGCTGATGTGACGAAACAATTGATGGTTGGTGGATACAGAGTTTGGGGCATATTGGGAGATCAATATAGCAGCATTGAGGGACTTCCAAGAGCCACAAGGACATTCAAACTTCCAAACCCATTGTACTATGTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

128

Amino Acids

14.74

Weight (kDa)

9.84

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 11 - 127 1.2e-19 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 21
Acc36I ACCTGC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 9
AclWI GGATC 1 cut(s) 29
AfaI GTAC 2 cut(s) 206, 374
AgsI TTSAA 4 cut(s) 40, 84, 247, 355
AluBI AGCT 2 cut(s) 94, 251
AluI AGCT 2 cut(s) 94, 251
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 29
ApeKI GCWGC 2 cut(s) 61, 318
AspS9I GGNCC 1 cut(s) 212
AvaII GGWCC 1 cut(s) 212
AxyI CCTNAGG 1 cut(s) 216
BaeI ACNNNNGTAYC 2 cut(s) 196, 229
BanI GGYRCC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 48, 330
BccI CCATC 2 cut(s) 135, 265
BciVI GTATCC 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 62
BfuAI ACCTGC 1 cut(s) 21
BfuI GTATCC 1 cut(s) 275
BisI GCNGC 2 cut(s) 62, 319
BlsI GCNGC 2 cut(s) 63, 320
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 2 cut(s) 11, 213
BmsI GCATC 1 cut(s) 225
Bse21I CCTNAGG 1 cut(s) 216
BseGI GGATG 3 cut(s) 146, 226, 240
BseMII CTCAG 1 cut(s) 207
BseXI GCAGC 2 cut(s) 48, 330
BshNI GGYRCC 1 cut(s) 9
BslFI GGGAC 1 cut(s) 342
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 342
Bsp143I GATC 5 cut(s) 21, 45, 66, 98, 307
BspCNI CTCAG 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 11, 213
BspMAI CTGCAG 1 cut(s) 66
BspMI ACCTGC 1 cut(s) 21
BspPI GGATC 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 9
BssMI GATC 5 cut(s) 21, 45, 66, 98, 307
Bst4CI ACNGT 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 95, 216
BstF5I GGATG 3 cut(s) 146, 226, 240
BstKTI GATC 5 cut(s) 24, 48, 69, 101, 310
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 5 cut(s) 21, 45, 66, 98, 307
BstSFI CTRYAG 1 cut(s) 62
BstV1I GCAGC 2 cut(s) 48, 330
Bsu36I CCTNAGG 1 cut(s) 216
BsuI GTATCC 1 cut(s) 275
BtsCI GGATG 3 cut(s) 146, 226, 240
BtsIMutI CAGTG 1 cut(s) 32
BveI ACCTGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 205, 373
CviAII CATG 1 cut(s) 125
CviJI RGCY 7 cut(s) 53, 61, 94, 104, 132, 251, 341
CviKI_1 RGCY 7 cut(s) 53, 61, 94, 104, 132, 251, 341
CviQI GTAC 2 cut(s) 205, 373
DdeI CTNAG 2 cut(s) 95, 216
DpnI GATC 5 cut(s) 23, 47, 68, 100, 309
DpnII GATC 5 cut(s) 21, 45, 66, 98, 307
Eco47I GGWCC 1 cut(s) 212
Eco81I CCTNAGG 1 cut(s) 216
EcoO109I RGGNCCY 1 cut(s) 212
FaeI CATG 1 cut(s) 128
FaiI YATR 8 cut(s) 126, 138, 188, 193, 195, 299, 315, 378
FaqI GGGAC 1 cut(s) 342
FatI CATG 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 62, 319
FokI GGATG 3 cut(s) 153, 233, 247
Fsp4HI GCNGC 2 cut(s) 62, 319
GluI GCNGC 2 cut(s) 62, 319
Hin1II CATG 1 cut(s) 128
Hpy188III TCNNGA 3 cut(s) 19, 215, 384
HpyAV CCTTC 2 cut(s) 128, 223
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4V TGCA 2 cut(s) 64, 238
HpyF3I CTNAG 2 cut(s) 95, 216
Hsp92II CATG 1 cut(s) 128
Kzo9I GATC 5 cut(s) 21, 45, 66, 98, 307
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 6 cut(s) 4, 26, 59, 67, 193, 228
Lsp1109I GCAGC 2 cut(s) 48, 330
LweI GCATC 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 256
MalI GATC 5 cut(s) 23, 47, 68, 100, 309
MboI GATC 5 cut(s) 21, 45, 66, 98, 307
MboII GAAGA 2 cut(s) 72, 161
MfeI CAATTG 1 cut(s) 266
MluCI AATT 1 cut(s) 266
MnlI CCTC 5 cut(s) 50, 81, 193, 211, 319
MseI TTAA 1 cut(s) 158
MunI CAATTG 1 cut(s) 266
NdeII GATC 5 cut(s) 21, 45, 66, 98, 307
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 2 cut(s) 11, 213
NmuCI GTSAC 1 cut(s) 256
PaqCI CACCTGC 1 cut(s) 21
PkrI GCNGC 2 cut(s) 63, 320
PpuMI RGGWCCY 1 cut(s) 212
Psp5II RGGWCCY 1 cut(s) 212
PspN4I GGNNCC 2 cut(s) 11, 213
PspPI GGNCC 1 cut(s) 212
PspPPI RGGWCCY 1 cut(s) 212
PstI CTGCAG 1 cut(s) 66
RsaI GTAC 2 cut(s) 206, 374
RsaNI GTAC 2 cut(s) 205, 373
SaqAI TTAA 1 cut(s) 158
SatI GCNGC 2 cut(s) 62, 319
Sau3AI GATC 5 cut(s) 21, 45, 66, 98, 307
Sau96I GGNCC 1 cut(s) 212
SetI ASST 5 cut(s) 15, 96, 120, 164, 253
SfaNI GCATC 1 cut(s) 225
SfcI CTRYAG 1 cut(s) 62
SinI GGWCC 1 cut(s) 212
Sse9I AATT 1 cut(s) 266
TaaI ACNGT 1 cut(s) 36
TasI AATT 1 cut(s) 266
TatI WGTACW 1 cut(s) 372
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 2 cut(s) 61, 318
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 237
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.