AT5G44020

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002586
Physical Location & Seq
Forward (+)
17712203 .. 17714406
2204 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44020.1

Sequence Viewer

Length: 819 bp
ATGGCTAGATCCTTGTTGCTCTCGCTAACCCTCACATTCCTCTTCGCCGGAATTGTCTCAGCTCGTGACTGGAACATCCTGAGCCAGCTCAAAGGAACCACAACCACCACGAAGACTAGCCAAACCGGCGTCACATCTTTGAAAGCTCCCAACCTAAACGGATACTGTGAGAGCTGGAGAGTCAACGTGGAGCTTAACAACATAAGGGACTTTAAGGTGGTTCCACAGGAATGTGTATGGTTCGTCCAAAAGTACATGACCTCATCTCAATACGAAGATGACGTGGAGAGAGCCGTCGATGAAGCCATCCTCTACCTCGGAAAAACTTGTTGCGAGAAGAAGACATGCGATGGCATGGATGCTTGGATCTTTGACATTGATGACACTCTTCTCTCAACCATTCCTTACCACAAGAGCAACGGTTGTTTCGGTGGTGAGCAACTGAACACGACCAAGTTCGAGGAATGGCAAAATTCGGGCAAGGCACCAGCGGTTCCACACATGGTGAAGTTGTACCATGAGATCAGAGAGAGAGGTTTCAAGATCTTTTTGATCTCTTCTCGTAAAGAGTATCTCAGATCTGCCACCGTCGAAAATCTTATTGAAGCCGGTTACCACAGCTGGTCTAACCTCCTTCTGAGGGGAGAAGATGATGAAAAGAAGAGTGTGAGCCAATACAAAGCAGATTTGAGGACATGGCTTACAAGTCTTGGGTACAGAGTTTGGGGAGTGATGGGTGCACAATGGAACAGCTTCTCTGGTTGTCCAGTTCCCAAGAGAACCTTCAAGCTCCCTAACTCCATCTACTATGTCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

272

Amino Acids

31.06

Weight (kDa)

8.08

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 44 - 271 3.9e-85 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 484
AciI CCGC 1 cut(s) 491
AclWI GGATC 2 cut(s) 3, 374
AcsI RAATTY 1 cut(s) 472
AcyI GRCGYC 1 cut(s) 129
AdeI CACNNNGTG 1 cut(s) 505
AfaI GTAC 3 cut(s) 254, 515, 716
AfiI CCNNNNNNNGG 1 cut(s) 640
AgsI TTSAA 4 cut(s) 142, 541, 605, 787
AjiI CACGTC 1 cut(s) 283
AjuI GAANNNNNNNTTGG 2 cut(s) 767, 799
AluBI AGCT 8 cut(s) 62, 88, 146, 174, 193, 621, 753, 790
AluI AGCT 8 cut(s) 62, 88, 146, 174, 193, 621, 753, 790
Alw21I GWGCWC 1 cut(s) 742
Alw26I GTCTC 1 cut(s) 61
Alw44I GTGCAC 1 cut(s) 738
AlwI GGATC 2 cut(s) 3, 374
ApaLI GTGCAC 1 cut(s) 738
ApoI RAATTY 1 cut(s) 472
Asp700I GAANNNNTTC 1 cut(s) 752
AsuHPI GGTGA 2 cut(s) 446, 517
BaeGI GKGCMC 1 cut(s) 742
BanI GGYRCC 1 cut(s) 484
BauI CACGAG 1 cut(s) 63
BbsI GAAGAC 2 cut(s) 119, 347
Bbv12I GWGCWC 1 cut(s) 742
BccI CCATC 4 cut(s) 314, 344, 727, 809
BceAI ACGGC 1 cut(s) 278
BciVI GTATCC 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 2 cut(s) 6, 117
BfuI GTATCC 1 cut(s) 155
BglI GCCNNNNNGGC 1 cut(s) 126
BglII AGATCT 2 cut(s) 543, 578
BmgBI CACGTC 1 cut(s) 283
BmiI GGNNCC 4 cut(s) 97, 222, 486, 495
BmsI GCATC 1 cut(s) 349
BpiI GAAGAC 2 cut(s) 119, 347
BpmI CTGGAG 1 cut(s) 196
Bpu10I CCTNAGC 1 cut(s) 80
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 640
Bse118I RCCGGY 2 cut(s) 125, 608
Bse1I ACTGG 2 cut(s) 74, 767
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 3 cut(s) 75, 306, 364
BseLI CCNNNNNNNGG 1 cut(s) 640
BseMII CTCAG 4 cut(s) 71, 72, 589, 629
BseNI ACTGG 2 cut(s) 74, 767
BseSI GKGCMC 1 cut(s) 742
BshNI GGYRCC 1 cut(s) 484
BsiHKAI GWGCWC 1 cut(s) 742
BsiSI CCGG 3 cut(s) 48, 126, 609
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 640
BsmAI GTCTC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 742
Bsp143I GATC 6 cut(s) 8, 366, 522, 543, 552, 578
BspACI CCGC 1 cut(s) 491
BspCNI CTCAG 4 cut(s) 71, 72, 588, 630
BspLI GGNNCC 4 cut(s) 97, 222, 486, 495
BspPI GGATC 2 cut(s) 3, 374
BspT107I GGYRCC 1 cut(s) 484
BsrFI RCCGGY 2 cut(s) 125, 608
BsrI ACTGG 2 cut(s) 74, 767
BssAI RCCGGY 2 cut(s) 125, 608
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 6 cut(s) 8, 366, 522, 543, 552, 578
BssNI GRCGYC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 63
Bst4CI ACNGT 3 cut(s) 167, 422, 589
Bst6I CTCTTC 4 cut(s) 47, 393, 562, 656
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 4 cut(s) 58, 80, 575, 638
BstEII GGTNACC 1 cut(s) 611
BstF5I GGATG 3 cut(s) 75, 306, 364
BstKTI GATC 6 cut(s) 11, 369, 525, 546, 555, 581
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 6 cut(s) 8, 366, 522, 543, 552, 578
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstNSI RCATGY 1 cut(s) 348
BstPI GGTNACC 1 cut(s) 611
BstSLI GKGCMC 1 cut(s) 742
BstV2I GAAGAC 2 cut(s) 119, 347
BstX2I RGATCY 4 cut(s) 8, 366, 543, 578
BstYI RGATCY 4 cut(s) 8, 366, 543, 578
BsuI GTATCC 1 cut(s) 155
BtgZI GCGATG 1 cut(s) 363
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 3 cut(s) 75, 306, 364
Cac8I GCNNGC 1 cut(s) 86
Cfr10I RCCGGY 2 cut(s) 125, 608
CseI GACGC 1 cut(s) 118
Csp6I GTAC 3 cut(s) 253, 514, 715
CviAII CATG 6 cut(s) 256, 345, 355, 502, 518, 696
CviQI GTAC 3 cut(s) 253, 514, 715
DdeI CTNAG 4 cut(s) 58, 80, 575, 638
DpnI GATC 6 cut(s) 10, 368, 524, 545, 554, 580
DpnII GATC 6 cut(s) 8, 366, 522, 543, 552, 578
DraIII CACNNNGTG 1 cut(s) 505
Eam1104I CTCTTC 4 cut(s) 47, 393, 562, 656
EarI CTCTTC 4 cut(s) 47, 393, 562, 656
Eco91I GGTNACC 1 cut(s) 611
EcoO65I GGTNACC 1 cut(s) 611
FaeI CATG 6 cut(s) 259, 348, 358, 505, 521, 699
FaiI YATR 9 cut(s) 203, 238, 257, 346, 356, 503, 519, 697, 810
FalI AAGNNNNNCTT 2 cut(s) 767, 799
FaqI GGGAC 1 cut(s) 221
FatI CATG 6 cut(s) 255, 344, 354, 501, 517, 695
FokI GGATG 3 cut(s) 62, 293, 371
FspBI CTAG 2 cut(s) 6, 117
GsuI CTGGAG 1 cut(s) 196
HapII CCGG 3 cut(s) 48, 126, 609
HgaI GACGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 6 cut(s) 259, 348, 358, 505, 521, 699
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 1 cut(s) 180
HpaII CCGG 3 cut(s) 48, 126, 609
HphI GGTGA 2 cut(s) 446, 517
Hpy166II GTNNAC 2 cut(s) 184, 740
Hpy188I TCNGA 4 cut(s) 320, 527, 578, 639
Hpy188III TCNNGA 3 cut(s) 65, 79, 541
Hpy8I GTNNAC 2 cut(s) 184, 740
Hpy99I CGWCG 2 cut(s) 299, 593
HpyAV CCTTC 2 cut(s) 644, 793
HpyCH4III ACNGT 3 cut(s) 167, 422, 589
HpyCH4IV ACGT 2 cut(s) 186, 282
HpyCH4V TGCA 1 cut(s) 740
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 4 cut(s) 58, 80, 575, 638
HpySE526I ACGT 2 cut(s) 186, 282
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 6 cut(s) 259, 348, 358, 505, 521, 699
Kzo9I GATC 6 cut(s) 8, 366, 522, 543, 552, 578
LmnI GCTCC 3 cut(s) 151, 190, 795
LweI GCATC 1 cut(s) 349
MaeI CTAG 2 cut(s) 6, 117
MaeII ACGT 2 cut(s) 186, 282
MaeIII GTNAC 3 cut(s) 65, 130, 611
MalI GATC 6 cut(s) 10, 368, 524, 545, 554, 580
MboI GATC 6 cut(s) 8, 366, 522, 543, 552, 578
MboII GAAGA 9 cut(s) 34, 124, 287, 349, 352, 380, 549, 659, 673
MflI RGATCY 4 cut(s) 8, 366, 543, 578
MhlI GDGCHC 1 cut(s) 742
MluCI AATT 2 cut(s) 51, 472
MlyI GAGTC 1 cut(s) 189
MroXI GAANNNNTTC 1 cut(s) 752
MseI TTAA 2 cut(s) 195, 213
MslI CAYNNNNRTG 1 cut(s) 229
MspA1I CMGCKG 2 cut(s) 491, 621
MspI CCGG 3 cut(s) 48, 126, 609
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeII GATC 6 cut(s) 8, 366, 522, 543, 552, 578
NlaIII CATG 6 cut(s) 259, 348, 358, 505, 521, 699
NlaIV GGNNCC 4 cut(s) 97, 222, 486, 495
NmuCI GTSAC 2 cut(s) 65, 130
NspI RCATGY 1 cut(s) 348
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PdmI GAANNNNTTC 1 cut(s) 752
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PspEI GGTNACC 1 cut(s) 611
PspN4I GGNNCC 4 cut(s) 97, 222, 486, 495
PsuI RGATCY 4 cut(s) 8, 366, 543, 578
PvuII CAGCTG 1 cut(s) 621
RsaI GTAC 3 cut(s) 254, 515, 716
RsaNI GTAC 3 cut(s) 253, 514, 715
RseI CAYNNNNRTG 1 cut(s) 229
SaqAI TTAA 2 cut(s) 195, 213
Sau3AI GATC 6 cut(s) 8, 366, 522, 543, 552, 578
SchI GAGTC 1 cut(s) 189
SduI GDGCHC 1 cut(s) 742
SfaNI GCATC 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 229
Sse9I AATT 2 cut(s) 51, 472
SsiI CCGC 1 cut(s) 491
SspMI CTAG 2 cut(s) 6, 117
TaaI ACNGT 3 cut(s) 167, 422, 589
TaiI ACGT 2 cut(s) 189, 285
TaqI TCGA 3 cut(s) 297, 459, 591
TasI AATT 2 cut(s) 51, 472
TatI WGTACW 1 cut(s) 252
Tru1I TTAA 2 cut(s) 195, 213
Tru9I TTAA 2 cut(s) 195, 213
TseFI GTSAC 2 cut(s) 65, 130
Tsp45I GTSAC 2 cut(s) 65, 130
TspDTI ATGAA 2 cut(s) 315, 669
TspGWI ACGGA 1 cut(s) 174
VneI GTGCAC 1 cut(s) 738
XapI RAATTY 1 cut(s) 472
XceI RCATGY 1 cut(s) 348
XmnI GAANNNNTTC 1 cut(s) 752
XspI CTAG 2 cut(s) 6, 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.